Search of human proteins with 4501853

Search of human proteins with 4501853

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4501853 acetyl-Coenzyme A acyltransferase 1 isoform a [Homo
sapiens]
         (424 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4501853 acetyl-Coenzyme A acyltransferase 1 isoform a [Homo s...   832   0.0  
gi|194353979 acetyl-Coenzyme A acyltransferase 1 isoform b [Homo...   585   e-167
gi|148539872 acetyl-Coenzyme A acetyltransferase 2 [Homo sapiens]     246   3e-65
gi|167614485 acetyl-coenzyme A acyltransferase 2 [Homo sapiens]       232   4e-61
gi|4504327 mitochondrial trifunctional protein, beta subunit pre...   197   2e-50
gi|4557237 acetyl-Coenzyme A acetyltransferase 1 precursor [Homo...   186   3e-47
gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo ...    64   3e-10
gi|55956775 sterol carrier protein 2 isoform 2 [Homo sapiens]          52   1e-06
gi|68163572 hypothetical protein LOC84077 [Homo sapiens]               33   0.64 
gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo ...    30   4.1  
gi|22748809 UBX domain protein 10 [Homo sapiens]                       30   5.4  
gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens]    29   7.1  
gi|139394579 zinc finger and BTB domain containing 40 [Homo sapi...    29   7.1  
gi|139394556 zinc finger and BTB domain containing 40 [Homo sapi...    29   7.1  
gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens]    29   7.1  
gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens]    29   7.1  
gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens]     29   7.1  
gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap...    29   7.1  
gi|7108367 vav 1 guanine nucleotide exchange factor [Homo sapiens]     29   9.2  
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i...    29   9.2  
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s...    29   9.2  

>gi|4501853 acetyl-Coenzyme A acyltransferase 1 isoform a [Homo
           sapiens]
          Length = 424

 Score =  832 bits (2150), Expect = 0.0
 Identities = 424/424 (100%), Positives = 424/424 (100%)

Query: 1   MQRLQVVLGHLRGPADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDTT 60
           MQRLQVVLGHLRGPADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDTT
Sbjct: 1   MQRLQVVLGHLRGPADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDTT 60

Query: 61  PDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVN 120
           PDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVN
Sbjct: 61  PDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVN 120

Query: 121 RQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIP 180
           RQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIP
Sbjct: 121 RQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIP 180

Query: 181 MGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSI 240
           MGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSI
Sbjct: 181 MGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSI 240

Query: 241 TVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPI 300
           TVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPI
Sbjct: 241 TVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPI 300

Query: 301 LGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLR 360
           LGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLR
Sbjct: 301 LGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLR 360

Query: 361 LPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAAAVFE 420
           LPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAAAVFE
Sbjct: 361 LPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAAAVFE 420

Query: 421 YPGN 424
           YPGN
Sbjct: 421 YPGN 424


>gi|194353979 acetyl-Coenzyme A acyltransferase 1 isoform b [Homo
           sapiens]
          Length = 331

 Score =  585 bits (1508), Expect = e-167
 Identities = 323/424 (76%), Positives = 325/424 (76%), Gaps = 93/424 (21%)

Query: 1   MQRLQVVLGHLRGPADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDTT 60
           MQRLQVVLGHLRGPADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDTT
Sbjct: 1   MQRLQVVLGHLRGPADSGWMPQAAPCLSGAPQASAADVVVVHGRRTAICRAGRGGFKDTT 60

Query: 61  PDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVN 120
           PDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVN
Sbjct: 61  PDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVN 120

Query: 121 RQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIP 180
           RQCSSGLQAVASIAGGIRNGSYDIGMACG                               
Sbjct: 121 RQCSSGLQAVASIAGGIRNGSYDIGMACG------------------------------- 149

Query: 181 MGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSI 240
             ITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSI
Sbjct: 150 --ITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSI 207

Query: 241 TVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPI 300
           TVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAG +  VSD                    
Sbjct: 208 TVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGLT--VSD-------------------- 245

Query: 301 LGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLR 360
                         DI  I  A+A                         SQAAYCVEKLR
Sbjct: 246 -------------VDIFEINEAFA-------------------------SQAAYCVEKLR 267

Query: 361 LPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAAAVFE 420
           LPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAAAVFE
Sbjct: 268 LPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAAAVFE 327

Query: 421 YPGN 424
           YPGN
Sbjct: 328 YPGN 331


>gi|148539872 acetyl-Coenzyme A acetyltransferase 2 [Homo sapiens]
          Length = 397

 Score =  246 bits (628), Expect = 3e-65
 Identities = 163/396 (41%), Positives = 224/396 (56%), Gaps = 19/396 (4%)

Query: 33  ASAADVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVL 92
           A +  VV+V   RT I  +  G        +L S V+  VLK   + PE + ++  G+VL
Sbjct: 3   AGSDPVVIVSAARTII-GSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVL 61

Query: 93  QPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVES 152
             G G    R A   + IP +VP  +    C SGL+AV      I  G   I +A G+E+
Sbjct: 62  AAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMEN 121

Query: 153 MSLADRGNPGNITSRLMEKEKARDCLIP----------MGITSENVAERFGISREKQDTF 202
           MS A          ++ E       L            MGIT+ENVA+++ +SRE QD  
Sbjct: 122 MSKAPHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKV 181

Query: 203 ALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKP 262
           A+ SQ +   AQ  G F  EIVPV  +       K  I V  DE  R  + +E ++KLKP
Sbjct: 182 AVLSQNRTENAQKAGHFDKEIVPVLVSTR-----KGLIEVKTDEFPRHGSNIEAMSKLKP 236

Query: 263 AFKKDGS--TTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIG 320
            F  DG+   T  N+S ++DGAAA++L ++S+A++ GL  L  + S++ VGV P IMGIG
Sbjct: 237 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIG 296

Query: 321 PAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLG 380
           P  AI  A+ KAG ++ DVDIFEINEAFA+ +A  V++L L PEKVN  GGA+ALGHPLG
Sbjct: 297 PIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLG 356

Query: 381 CTGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAA 416
            +G R ++TLL+ L+R G R+ GV ++CIG GMG A
Sbjct: 357 ASGCRILVTLLHTLERMG-RSRGVAALCIGGGMGIA 391


>gi|167614485 acetyl-coenzyme A acyltransferase 2 [Homo sapiens]
          Length = 397

 Score =  232 bits (592), Expect = 4e-61
 Identities = 153/395 (38%), Positives = 208/395 (52%), Gaps = 19/395 (4%)

Query: 38  VVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAG 97
           V VV  +RT     G G  KD T  +L      A L    + PE +  + +GNVLQ  + 
Sbjct: 7   VFVVAAKRTPFGAYG-GLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSD 65

Query: 98  AI-MARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLA 156
           AI +AR       IP+  P  T+NR C SG Q++ +    I     ++ +  G ESMS A
Sbjct: 66  AIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQA 125

Query: 157 DR-----------GNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALA 205
                        G+   +   L      +   +PM +T+EN+A +  ISRE+ D +AL 
Sbjct: 126 PYCVRNVRFGTKLGSDIKLEDSLWVSLTDQHVQLPMAMTAENLAVKHKISREECDKYALQ 185

Query: 206 SQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFK 265
           SQQ+   A   G F  E+ P+       K  K   T+  DE  RP TT+E L KL P FK
Sbjct: 186 SQQRWKAANDAGYFNDEMAPIEV-----KTKKGKQTMQVDEHARPQTTLEQLQKLPPVFK 240

Query: 266 KDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAI 325
           KDG+ TAGN+S V+DGA A+++A     ++     L  +  Y V G  P IMGIGP  AI
Sbjct: 241 KDGTVTAGNASGVADGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAI 300

Query: 326 PVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGAR 385
             AL+KAGL++ D+D+ E+NEAFA Q       L L   K N  GGA+ALGHPLG +G+R
Sbjct: 301 SGALKKAGLSLKDMDLVEVNEAFAPQYLAVERSLDLDISKTNVNGGAIALGHPLGGSGSR 360

Query: 386 QVITLLNELKRRGKRAYGVVSMCIGTGMGAAAVFE 420
               L++EL+RRG + Y V S CIG G G A + +
Sbjct: 361 ITAHLVHELRRRGGK-YAVGSACIGGGQGIAVIIQ 394


>gi|4504327 mitochondrial trifunctional protein, beta subunit
           precursor [Homo sapiens]
          Length = 474

 Score =  197 bits (501), Expect = 2e-50
 Identities = 153/453 (33%), Positives = 227/453 (50%), Gaps = 64/453 (14%)

Query: 22  QAAPCLSGAPQASAA-----DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDV 76
           +AAP +    + + A     +VVVV G RT    +G   +KD  P +L  A +T +L   
Sbjct: 33  RAAPAVQTKTKKTLAKPNIRNVVVVDGVRTPFLLSGTS-YKDLMPHDLARAALTGLLHRT 91

Query: 77  NLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGG 136
           ++  E +  I  G V+Q    + +AR A   +   +  P  TV   C S  QA+ +  G 
Sbjct: 92  SVPKEVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGL 151

Query: 137 IRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKAR--------------DCLIP-- 180
           I +G  D+ +A GVE MS     +   +   +++  KA+              + L P  
Sbjct: 152 IASGQCDVIVAGGVELMSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPEL 211

Query: 181 -----------MGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTT 229
                      MG +++ +A  F +SR +QD +AL S   A +AQ +G   +++VP    
Sbjct: 212 PAVSEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLL-SDVVPFKVP 270

Query: 230 VHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAF-KKDGSTTAGNSSQVSDGAAAILLA 288
             D        TVT+D GIRPS ++E +AKLKPAF K  G+ TA NSS ++DGA+A+L+ 
Sbjct: 271 GKD--------TVTKDNGIRPS-SLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIM 321

Query: 289 RRSKAEELGLPILGVLRSYAVVGV-PPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEA 347
              KA  +G      LR +  V   P D + +GP YA P  L+KAGLT++D+D FE +EA
Sbjct: 322 AEEKALAMGYKPKAYLRDFMYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEA 381

Query: 348 FASQAAYCVE----------------KLRLPP-EKVNPLGGAVALGHPLGCTGARQVITL 390
           F+ Q     +                K+ LPP EK N  GG+++LGHP G TG R V+  
Sbjct: 382 FSGQILANFKAMDSDWFAENYMGRKTKVGLPPLEKFNNWGGSLSLGHPFGATGCRLVMAA 441

Query: 391 LNELKRRGKRAYGVVSMCIGTGMGAAAVFE-YP 422
            N L++ G + YG+V+ C   G G A + E YP
Sbjct: 442 ANRLRKEGGQ-YGLVAACAAGGQGHAMIVEAYP 473


>gi|4557237 acetyl-Coenzyme A acetyltransferase 1 precursor [Homo
           sapiens]
          Length = 427

 Score =  186 bits (473), Expect = 3e-47
 Identities = 132/392 (33%), Positives = 213/392 (54%), Gaps = 20/392 (5%)

Query: 37  DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 96
           +VV+V   RT I  +  G        +L S  +   ++   +  E++ +  +GNVLQ G 
Sbjct: 41  EVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 99

Query: 97  GAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMS-- 154
           G    R A   + +P + P +T+N+ C+SG++A+   +  +  G  D+ +A G+ESMS  
Sbjct: 100 GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNV 159

Query: 155 --LADRGNP---GNITSRLMEKEKARDCL--IPMGITSENVAERFGISREKQDTFALASQ 207
             + +RG+    G     L+ K+   D    I MG  +EN A++  I+R +QD +A+ S 
Sbjct: 160 PYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSY 219

Query: 208 QKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKD 267
            ++  A   G F  E++PVT TV   KG +  + V +DE  +       + KLK  F+K+
Sbjct: 220 TRSKAAWEAGKFGNEVIPVTVTV---KG-QPDVVVKEDEEYK-RVDFSKVPKLKTVFQKE 274

Query: 268 -GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIP 326
            G+ TA N+S ++DGAAA++L     A+ L +  L  + ++A   V P    I P YA  
Sbjct: 275 NGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAAS 334

Query: 327 VALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQ 386
           + L+  GL   D+ ++E+NEAF+      ++ L + P+KVN  GGAV+LGHP+G +GAR 
Sbjct: 335 MVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARI 394

Query: 387 VITLLNELKRRGKRAYGVVSMCIGTGMGAAAV 418
           V  L + LK   +  YG+ S+C G G GA+A+
Sbjct: 395 VGHLTHALK---QGEYGLASICNGGG-GASAM 422


>gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo
           sapiens]
          Length = 547

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 83/338 (24%), Positives = 137/338 (40%), Gaps = 56/338 (16%)

Query: 114 VPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEK 173
           +P+  VN  C++G  A+      I+ G  +  +A G E MS    G     + R +  +K
Sbjct: 85  IPIINVNNNCATGSTALFMARQLIQGGVAECVLALGFEKMSKGSLGI--KFSDRTIPTDK 142

Query: 174 ARDCLI-PMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHD 232
             D LI   G+++  VA +          F  A ++   +  +K    A+I         
Sbjct: 143 HVDLLINKYGLSAHPVAPQM---------FGYAGKEHMEKYGTKIEHFAKI--------G 185

Query: 233 DKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSK 292
            K  K S+     +  +   +++ +   K  F      T       SDGAAA +LA  + 
Sbjct: 186 WKNHKHSVNNPYSQ-FQDEYSLDEVMASKEVFD---FLTILQCCPTSDGAAAAILASEAF 241

Query: 293 AEELGLP--ILGVLRSYAVVGVPPD------IMGIG---PAYAIPVALQKAGLTVSDVDI 341
            ++ GL    + +L    +  +P        I  +G      A     +K+GLT +D+D+
Sbjct: 242 VQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDV 301

Query: 342 FEINEAFASQAAYCVEKLRLPPEK------------------VNPLGGAVALGHPLGCTG 383
            E+++ F++      E L L PE                   +NP GG ++ GHPLG TG
Sbjct: 302 IELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATG 361

Query: 384 ARQVITLLNELK-RRGKRAY--GVVSMCIGTGMGAAAV 418
             Q   L  +L+   GKR      V++    G+G A V
Sbjct: 362 LAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVV 399


>gi|55956775 sterol carrier protein 2 isoform 2 [Homo sapiens]
          Length = 322

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 29/134 (21%)

Query: 279 SDGAAAILLARRSKAEELGLP--ILGVLRSYAVVGVPPD------IMGIG---PAYAIPV 327
           SDGAAA +LA  +  ++ GL    + +L    +  +P        I  +G      A   
Sbjct: 184 SDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARK 243

Query: 328 ALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPE------------------KVNPL 369
             +K+GLT +D+D+ E+++ F++      E L L PE                   +NP 
Sbjct: 244 CYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPS 303

Query: 370 GGAVALGHPLGCTG 383
           GG ++ GHPLG TG
Sbjct: 304 GGLISKGHPLGATG 317


>gi|68163572 hypothetical protein LOC84077 [Homo sapiens]
          Length = 904

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 11/106 (10%)

Query: 90  NVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACG 149
           ++L+  +G + + IA+ L D PE+ P+S V +      +A  +  G  R G      A  
Sbjct: 603 SLLRSQSGHLESSIAETLKDEPESAPVSPVRKTTKIHTKAKVTSRGKAREGRSPTRWAAL 662

Query: 150 VESMSLADRGNPGNITSRLMEKEKAR---DCLIPMGITSENVAERF 192
                L        +  +LM KE  R    CL+   + S+   ERF
Sbjct: 663 PSDCPL--------VLRKLMLKEDTRAGCKCLVKAPLVSDVELERF 700


>gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo
           sapiens]
          Length = 152

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 19/86 (22%), Positives = 38/86 (44%)

Query: 178 LIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTK 237
           +I   +T+E+  ++   +     T  + +++   R   K  + +++  VTT +  DK  K
Sbjct: 66  IIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKK 125

Query: 238 RSITVTQDEGIRPSTTMEGLAKLKPA 263
             + +  D       T  G +KL PA
Sbjct: 126 AYVRLAPDYDALDVATKLGSSKLSPA 151


>gi|22748809 UBX domain protein 10 [Homo sapiens]
          Length = 280

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 207 QQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKK 266
           +++A    +K     ++  +     D+ GT +  T  +D   R         K     KK
Sbjct: 126 EEEAVETVAKKASSLQLSSIRALYQDETGTMK--TSEEDSRARACAVER---KFIVRTKK 180

Query: 267 DGSTTAGNSSQVSDGAAAILLARRS 291
            GS+ AGN  + SD    +LLA RS
Sbjct: 181 QGSSRAGNLEEPSDQEPRLLLAVRS 205


>gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens]
          Length = 1721

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 105 QFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNI 164
           QF  + PETV  S V+ +  +G  A+     GI+  +     A G++  + +D+ +P NI
Sbjct: 123 QFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAVATAEALGLDRPA-SDKQSPLNI 181


>gi|139394579 zinc finger and BTB domain containing 40 [Homo
           sapiens]
          Length = 1239

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 126 GLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITS 185
           G  A   I G +R  S D+     V  + L    NP   T+ L  K +  D + P G T 
Sbjct: 288 GHSAFQRILGKVREESLDVQTV--VSLLRLYQYSNPAVKTALLDRKPEDVDTVQPKGSTE 345

Query: 186 ENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDD--KGTKRSITVT 243
           E       +   K+D     +Q +             I+    T  ++   GT++ + + 
Sbjct: 346 EGKTLSVLLLEHKEDLIQCVTQLR------------PIMESLETAKEEFLTGTEKRVILN 393

Query: 244 QDEGIRPSTTMEGL 257
             EG  P  T+E L
Sbjct: 394 CCEGRTPKETIENL 407


>gi|139394556 zinc finger and BTB domain containing 40 [Homo
           sapiens]
          Length = 1239

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 16/134 (11%)

Query: 126 GLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITS 185
           G  A   I G +R  S D+     V  + L    NP   T+ L  K +  D + P G T 
Sbjct: 288 GHSAFQRILGKVREESLDVQTV--VSLLRLYQYSNPAVKTALLDRKPEDVDTVQPKGSTE 345

Query: 186 ENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDD--KGTKRSITVT 243
           E       +   K+D     +Q +             I+    T  ++   GT++ + + 
Sbjct: 346 EGKTLSVLLLEHKEDLIQCVTQLR------------PIMESLETAKEEFLTGTEKRVILN 393

Query: 244 QDEGIRPSTTMEGL 257
             EG  P  T+E L
Sbjct: 394 CCEGRTPKETIENL 407


>gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens]
          Length = 1755

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 105 QFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNI 164
           QF  + PETV  S V+ +  +G  A+     GI+  +     A G++  + +D+ +P NI
Sbjct: 123 QFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAVATAEALGLDRPA-SDKQSPLNI 181


>gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens]
          Length = 1703

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 105 QFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNI 164
           QF  + PETV  S V+ +  +G  A+     GI+  +     A G++  + +D+ +P NI
Sbjct: 123 QFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAVATAEALGLDRPA-SDKQSPLNI 181


>gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens]
          Length = 1721

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 105 QFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNI 164
           QF  + PETV  S V+ +  +G  A+     GI+  +     A G++  + +D+ +P NI
Sbjct: 123 QFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAVATAEALGLDRPA-SDKQSPLNI 181


>gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sapiens]
          Length = 2961

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 85   DICVGNVLQPGAGAIMARIAQFLSDIPETVPL---STVNRQCSSGLQAVASIAGGIR--- 138
            DI  G+ +     A  A +     D+ E +     S      S     V S+A GIR   
Sbjct: 1326 DIVAGSTIDQAVNATFAALVYRTPDLYEKLQKYVNSGGKIALSEEFAQVYSLADGIRIWM 1385

Query: 139  -----NGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFG 193
                      +G     +  S A   NP ++    +EK       +P GI+S+   E+  
Sbjct: 1386 LEMKQKSLMSLGNEAEEKHSSEATEVNPESLAKECIEKSLLLLKFLPTGISSKESCEKLE 1445

Query: 194  ISREKQDTFALASQQKAARAQSKGCFQAEIVP 225
             + E      L  +Q+ +    +  FQA + P
Sbjct: 1446 TADETSHLQPLNKRQRTSSVVEEH-FQASVSP 1476


>gi|7108367 vav 1 guanine nucleotide exchange factor [Homo sapiens]
          Length = 845

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 13/64 (20%)

Query: 288 ARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEA 347
           A+  K  ELGLP + V + Y   G+PP    IGP            L ++  DI E+ +A
Sbjct: 584 AQDKKRNELGLPKMEVFQEY--YGLPPPPGAIGPF-----------LRLNPGDIVELTKA 630

Query: 348 FASQ 351
            A Q
Sbjct: 631 EAEQ 634


>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
           isoform [Homo sapiens]
          Length = 302

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 125 SGLQAVASIAGGIRNGSYDIGMACGVESMSL-ADRGNPGNITSRLMEKEKARDC-LIPMG 182
           SG   +    GG   G    G A   E +   +    PG    R  E  K  DC  +P G
Sbjct: 99  SGGSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCPALPPG 158

Query: 183 ITSENVAERFGISREKQDTFALASQQKAARAQ 214
              E V  + G+S  K D +  +   K  R++
Sbjct: 159 WKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSK 190


>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
           sapiens]
          Length = 411

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 125 SGLQAVASIAGGIRNGSYDIGMACGVESMSL-ADRGNPGNITSRLMEKEKARDC-LIPMG 182
           SG   +    GG   G    G A   E +   +    PG    R  E  K  DC  +P G
Sbjct: 99  SGGSGLGGDGGGCGGGGSGGGGAPRREPVPFPSGSAGPGPRGPRATESGKRMDCPALPPG 158

Query: 183 ITSENVAERFGISREKQDTFALASQQKAARAQ 214
              E V  + G+S  K D +  +   K  R++
Sbjct: 159 WKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSK 190


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,725,180
Number of Sequences: 37866
Number of extensions: 680326
Number of successful extensions: 1668
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1632
Number of HSP's gapped (non-prelim): 26
length of query: 424
length of database: 18,247,518
effective HSP length: 105
effective length of query: 319
effective length of database: 14,271,588
effective search space: 4552636572
effective search space used: 4552636572
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.