Guide to the Human Genome
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Name: HADHB Sequence: fasta or formatted (474aa) NCBI GI: 4504327
Description:

mitochondrial trifunctional protein, beta subunit precursor

Referenced in:

Cholesterol Biosynthesis
Fatty Acid Oxidation and Ketone Bodies

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         57           3
 C cysteine            1.1          5           1
 D aspartate           4.6         22           1
 E glutamate           4.2         20           2
 F phenylalanine       4.4         21           1
 G glycine             7.4         35           2
 H histidine           1.9          9           1
 I isoleucine          3.6         17           2
 K lysine              7.4         35           2
 L leucine            10.1         48           3
 M methionine          4.0         19           1
 N asparagine          3.2         15           2
 P proline             5.3         25           2
 Q glutamine           3.0         14           1
 R arginine            4.6         22           1
 S serine              7.4         35           2
 T threonine           6.1         29           2
 V valine              6.5         31           4
 W tryptophan          0.6          3           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial trifunctional protein, beta subunit pre... 
ACAA1                 0.189   acetyl-Coenzyme A acyltransferase 1 isoform a 
ACAA2                 0.188   acetyl-coenzyme A acyltransferase 2 
ACAT1                 0.178   acetyl-Coenzyme A acetyltransferase 1 precursor [Homo...
ACAT2                 0.155   acetyl-Coenzyme A acetyltransferase 2 
ACAA1                 0.084   acetyl-Coenzyme A acyltransferase 1 isoform b [Homo...
SCP2                  0.032   sterol carrier protein 2 isoform 1 proprotein 
SCP2                  0.022   sterol carrier protein 2 isoform 2 
OXSM                  0.010   3-oxoacyl-ACP synthase, mitochondrial isoform 1 precu...
DOCK5                 0.009   dedicator of cytokinesis 5 
FASN                  0.006   fatty acid synthase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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