Guide to the Human Genome
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Name: SCP2 Sequence: fasta or formatted (322aa) NCBI GI: 55956775
Description:

sterol carrier protein 2 isoform 2

Referenced in:

Cholesterol Biosynthesis

Other entries for this name:
alt prot [547aa] sterol carrier protein 2 isoform 1 proprotein
alt prot [143aa] sterol carrier protein 2 isoform 1 precursor
alt prot [140aa] sterol carrier protein 2 isoform 2 precursor
alt prot [59aa] sterol carrier protein 2 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         29           4
 C cysteine            2.5          8           2
 D aspartate           5.6         18           1
 E glutamate           7.1         23           2
 F phenylalanine       4.3         14           1
 G glycine             9.3         30           2
 H histidine           2.8          9           1
 I isoleucine          4.7         15           2
 K lysine              7.8         25           2
 L leucine             7.8         25           2
 M methionine          3.1         10           2
 N asparagine          2.8          9           2
 P proline             4.7         15           1
 Q glutamine           3.1         10           1
 R arginine            1.9          6           2
 S serine              8.1         26           3
 T threonine           4.3         14           1
 V valine              6.5         21           2
 W tryptophan          0.9          3           1
 Y tyrosine            3.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterol carrier protein 2 isoform 2 
SCP2                  0.951   sterol carrier protein 2 isoform 1 proprotein 
ACAA1                 0.043   acetyl-Coenzyme A acyltransferase 1 isoform a 
HADHB                 0.032   mitochondrial trifunctional protein, beta subunit pre...
ACAT2                 0.032   acetyl-Coenzyme A acetyltransferase 2 
ACAA1                 0.030   acetyl-Coenzyme A acyltransferase 1 isoform b [Homo...
ACAA2                 0.019   acetyl-coenzyme A acyltransferase 2 
ACAT1                 0.009   acetyl-Coenzyme A acetyltransferase 1 precursor [Homo...
DCAF13                0.008   WD repeats and SOF1 domain containing 
PIP5K1B               0.006   phosphatidylinositol-4-phosphate 5-kinase, type I, be...
EIF2B1                0.006   eukaryotic translation initiation factor 2B, subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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