Guide to the Human Genome
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Search of human proteins with 44955885

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|44955885 myoglobin [Homo sapiens]
         (154 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|44955888 myoglobin [Homo sapiens]                                  316   6e-87
gi|44955885 myoglobin [Homo sapiens]                                  316   6e-87
gi|4885477 myoglobin [Homo sapiens]                                   316   6e-87
gi|19549331 cytoglobin [Homo sapiens]                                  79   1e-15
gi|4885397 hemoglobin, zeta [Homo sapiens]                             70   9e-13
gi|28302131 A-gamma globin [Homo sapiens]                              56   1e-08
gi|6715607 G-gamma globin [Homo sapiens]                               56   1e-08
gi|4885393 epsilon globin [Homo sapiens]                               52   2e-07
gi|4504347 alpha 1 globin [Homo sapiens]                               52   2e-07
gi|4504345 alpha 2 globin [Homo sapiens]                               52   2e-07
gi|4885395 theta 1 globin [Homo sapiens]                               52   2e-07
gi|51510893 hemoglobin mu chain [Homo sapiens]                         49   2e-06
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]         29   1.4  
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]         29   1.4  
gi|239753845 PREDICTED: similar to UDP-glucuronosyltransferase 2...    28   2.4  
gi|239748406 PREDICTED: hypothetical protein XP_002346669 [Homo ...    28   2.4  
gi|194272142 myosin IXB isoform 2 [Homo sapiens]                       28   2.4  
gi|33356170 myosin IXB isoform 1 [Homo sapiens]                        28   2.4  
gi|4758532 ral guanine nucleotide dissociation stimulator-like 2...    28   2.4  
gi|4502443 dystonin isoform 1e precursor [Homo sapiens]                28   3.1  
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi...    28   3.1  
gi|4504063 golgin 97 [Homo sapiens]                                    28   4.1  
gi|24308133 transmembrane and coiled-coil domains 1 [Homo sapiens]     28   4.1  
gi|31652264 RNA binding motif protein 26 [Homo sapiens]                28   4.1  
gi|32479525 potassium voltage-gated channel, KQT-like subfamily,...    27   5.3  
gi|32479527 potassium voltage-gated channel, KQT-like subfamily,...    27   5.3  
gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]                   27   6.9  
gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens]    27   6.9  
gi|105990532 apolipoprotein B precursor [Homo sapiens]                 27   9.1  
gi|13375616 fatty acid desaturase 3 [Homo sapiens]                     27   9.1  

>gi|44955888 myoglobin [Homo sapiens]
          Length = 154

 Score =  316 bits (809), Expect = 6e-87
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
           MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
Sbjct: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60

Query: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
           DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
Sbjct: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120

Query: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
           PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154


>gi|44955885 myoglobin [Homo sapiens]
          Length = 154

 Score =  316 bits (809), Expect = 6e-87
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
           MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
Sbjct: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60

Query: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
           DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
Sbjct: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120

Query: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
           PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154


>gi|4885477 myoglobin [Homo sapiens]
          Length = 154

 Score =  316 bits (809), Expect = 6e-87
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
           MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE
Sbjct: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60

Query: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
           DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH
Sbjct: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120

Query: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154
           PGDFGADAQGAMNKALELFRKDMASNYKELGFQG
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYKELGFQG 154


>gi|19549331 cytoglobin [Homo sapiens]
          Length = 190

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 3/153 (1%)

Query: 3   LSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 62
           LS+ E + V  +W ++ A+    G  +L+R F   P   + F +FKH++   EM+ S  L
Sbjct: 19  LSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQL 78

Query: 63  KKHGATVLTALGGILKKKGHHEAEIKPLA---QSHATKHKIPVKYLEFISECIIQVLQSK 119
           +KH   V+ AL  +++     +     LA   ++HA KHK+   Y + +S  I++V+  +
Sbjct: 79  RKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEE 138

Query: 120 HPGDFGADAQGAMNKALELFRKDMASNYKELGF 152
              DF  + Q A  K   L    + + YKE+G+
Sbjct: 139 FASDFPPETQRAWAKLRGLIYSHVTAAYKEVGW 171


>gi|4885397 hemoglobin, zeta [Homo sapiens]
          Length = 142

 Score = 69.7 bits (169), Expect = 9e-13
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
           M L+  E  +++++W K+       G E L RLF  HP+T   F  F      D    S 
Sbjct: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA 54

Query: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
            L+ HG+ V+ A+G  +K        +  L++ HA   ++     + +S C++  L ++ 
Sbjct: 55  QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARF 114

Query: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
           P DF A+A  A +K L +    +   Y+
Sbjct: 115 PADFTAEAHAAWDKFLSVVSSVLTEKYR 142


>gi|28302131 A-gamma globin [Homo sapiens]
          Length = 147

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
           + ++WGKV  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 12  ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69

Query: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
           T+LG   K     +     L++ H  K  +  +  + +   ++ VL      +F  + Q 
Sbjct: 70  TSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129

Query: 131 AMNKALELFRKDMASNY 147
           +  K +      ++S Y
Sbjct: 130 SWQKMVTAVASALSSRY 146


>gi|6715607 G-gamma globin [Homo sapiens]
          Length = 147

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)

Query: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
           + ++WGKV  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 12  ITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHGKKVL 69

Query: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
           T+LG  +K     +     L++ H  K  +  +  + +   ++ VL      +F  + Q 
Sbjct: 70  TSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPEVQA 129

Query: 131 AMNKALELFRKDMASNY 147
           +  K +      ++S Y
Sbjct: 130 SWQKMVTGVASALSSRY 146


>gi|4885393 epsilon globin [Homo sapiens]
          Length = 147

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 2/137 (1%)

Query: 11  VLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVL 70
           V ++W K+  ++   G E L RL   +P T   FD F +L S   +  +  +K HG  VL
Sbjct: 12  VTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHGKKVL 69

Query: 71  TALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQG 130
           T+ G  +K   + +     L++ H  K  +  +  + +   ++ +L +    +F  + Q 
Sbjct: 70  TSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEVQA 129

Query: 131 AMNKALELFRKDMASNY 147
           A  K +      +A  Y
Sbjct: 130 AWQKLVSAVAIALAHKY 146


>gi|4504347 alpha 1 globin [Homo sapiens]
          Length = 142

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 6/148 (4%)

Query: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
           M LS  +   V   WGKV A    +G E L R+F   P T   F  F      D    S 
Sbjct: 1   MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGSA 54

Query: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
            +K HG  V  AL   +         +  L+  HA K ++     + +S C++  L +  
Sbjct: 55  QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL 114

Query: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
           P +F      +++K L      + S Y+
Sbjct: 115 PAEFTPAVHASLDKFLASVSTVLTSKYR 142


>gi|4504345 alpha 2 globin [Homo sapiens]
          Length = 142

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 6/148 (4%)

Query: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
           M LS  +   V   WGKV A    +G E L R+F   P T   F  F      D    S 
Sbjct: 1   MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGSA 54

Query: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
            +K HG  V  AL   +         +  L+  HA K ++     + +S C++  L +  
Sbjct: 55  QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL 114

Query: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
           P +F      +++K L      + S Y+
Sbjct: 115 PAEFTPAVHASLDKFLASVSTVLTSKYR 142


>gi|4885395 theta 1 globin [Homo sapiens]
          Length = 142

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 6/148 (4%)

Query: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
           M LS  +  LV  +W K+ +++  +  E L R F   P T   F    HL   D    S 
Sbjct: 1   MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFS---HL---DLSPGSS 54

Query: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
            ++ HG  V  AL   +++       +  L+  HA + ++     + +  C++  L   +
Sbjct: 55  QVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHY 114

Query: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
           PGDF    Q +++K L      + S Y+
Sbjct: 115 PGDFSPALQASLDKFLSHVISALVSEYR 142


>gi|51510893 hemoglobin mu chain [Homo sapiens]
          Length = 141

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 6/134 (4%)

Query: 3   LSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 62
           LS  E   +  VW  +       G E+L+RLF  +P T   F    HL +  +   +  L
Sbjct: 2   LSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFP---HLSACQD---ATQL 55

Query: 63  KKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPG 122
             HG  +L A+G  ++   +  A + PLA  HA   ++       + +C   VL S    
Sbjct: 56  LSHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQD 115

Query: 123 DFGADAQGAMNKAL 136
           +F    Q A +K L
Sbjct: 116 EFTVQMQAAWDKFL 129


>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
          Length = 1528

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 45  DKFKHLKSEDEMKA-SEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVK 103
           D F  L S  E+ + S  +K H  T  +    +LK+      E   L  SH +KHK P K
Sbjct: 635 DSFGSLPSPKELSSFSFSMKGHEKTAKSKTRSLLKRM-----ESLKLKSSHHSKHKAPSK 689

Query: 104 YLEFISECIIQ 114
               IS  I+Q
Sbjct: 690 LGLIISGPILQ 700


>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
          Length = 1091

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 45  DKFKHLKSEDEMKA-SEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVK 103
           D F  L S  E+ + S  +K H  T  +    +LK+      E   L  SH +KHK P K
Sbjct: 198 DSFGSLPSPKELSSFSFSMKGHEKTAKSKTRSLLKRM-----ESLKLKSSHHSKHKAPSK 252

Query: 104 YLEFISECIIQ 114
               IS  I+Q
Sbjct: 253 LGLIISGPILQ 263


>gi|239753845 PREDICTED: similar to UDP-glucuronosyltransferase 2B19
           [Homo sapiens]
          Length = 185

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 36  GHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQS-- 93
           G P  +++ DKF H+K++ E             +L AL  ++    H++  +KP  Q+  
Sbjct: 65  GLPLFVDQPDKFVHMKAKGEAVRVNSKTMSTTDLLNALKAVINDFTHYDQLMKPTDQTVF 124

Query: 94  ---HATKHK------IPVKYLEFISECIIQVLQSK 119
                 +H+       P   L ++  C + VL  K
Sbjct: 125 WIKFVMRHRGAKYLLPPANSLTWLQYCSLVVLACK 159


>gi|239748406 PREDICTED: hypothetical protein XP_002346669 [Homo
           sapiens]
          Length = 185

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 36  GHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQS-- 93
           G P  +++ DKF H+K++ E             +L AL  ++    H++  +KP  Q+  
Sbjct: 65  GLPLFVDQPDKFVHMKAKGEAVRVNSKTMSTTDLLNALKAVINDFTHYDQLMKPTDQTVF 124

Query: 94  ---HATKHK------IPVKYLEFISECIIQVLQSK 119
                 +H+       P   L ++  C + VL  K
Sbjct: 125 WIKFVMRHRGAKYLLPPANSLTWLQYCSLVVLACK 159


>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
          Length = 2022

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 76  ILKKKGHHEAEIKP--LAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMN 133
           ILK KG  + +I P  L  S + K  I +   +  ++ ++ + + K P    A  Q ++N
Sbjct: 777 ILKSKGIKQKQIIPKNLLDSKSLKLIISMTLHDRTTKSLLHLHKKKKPPSISAQFQTSLN 836

Query: 134 KALELFRK 141
           K LE   K
Sbjct: 837 KLLEALGK 844


>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
          Length = 2157

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 76  ILKKKGHHEAEIKP--LAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADAQGAMN 133
           ILK KG  + +I P  L  S + K  I +   +  ++ ++ + + K P    A  Q ++N
Sbjct: 777 ILKSKGIKQKQIIPKNLLDSKSLKLIISMTLHDRTTKSLLHLHKKKKPPSISAQFQTSLN 836

Query: 134 KALELFRK 141
           K LE   K
Sbjct: 837 KLLEALGK 844


>gi|4758532 ral guanine nucleotide dissociation stimulator-like 2
           [Homo sapiens]
          Length = 777

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 101 PVKYLEFISECIIQVLQS---KHPGDFGADAQGAMNKALELF 139
           P   LE  +E  I VL +    HP DFG++A+G +++ LE F
Sbjct: 148 PTDELERTTEVAISVLSTWLASHPEDFGSEAKGQLDR-LESF 188


>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
          Length = 2649

 Score = 28.1 bits (61), Expect = 3.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 51   KSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHK 99
            K+E+ M+ + DLKK        L  +  +KG  + E+  + ++HA   K
Sbjct: 1451 KAEEAMQEASDLKKIKRNYQLELESLNHEKGKLQREVDRITRAHAVAEK 1499


>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
           sapiens]
          Length = 820

 Score = 28.1 bits (61), Expect = 3.1
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 47  FKHLKSEDEMKASEDL---KKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVK 103
           FK  K  D  K  ED    KK  A  L+    + KKK   EAE KP   S A +    +K
Sbjct: 116 FKSRKDRDSKKDEEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALK 175


>gi|4504063 golgin 97 [Homo sapiens]
          Length = 767

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 27  QEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAE 86
           ++ +++L +GH   L +  +      + E++A   LK   A V+     +L+ +G  +AE
Sbjct: 525 EQEILQLERGHNSALLQIHQL-----QAELEALRTLKAEEAAVVAEQEDLLRLRGPLQAE 579

Query: 87  IKPLAQSHAT 96
              + +SH T
Sbjct: 580 ALSVNESHVT 589


>gi|24308133 transmembrane and coiled-coil domains 1 [Homo
          sapiens]
          Length = 188

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 45 DKFKHLKSEDEMKASEDLKKHGATVLTALGGILKKKGHHEAE 86
          DK+K LK+E E K S+ L+K   T+  + G   KKK   + E
Sbjct: 34 DKYKRLKAEVE-KQSKKLEKKKETITESAGRQQKKKIERQEE 74


>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
          Length = 980

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 17  KVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDE---MKASEDLKKH 65
           K++ D+    QE+L +  +     + K +K K +KSED+   MK  E L K+
Sbjct: 705 KLQQDVRKRKQEILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTLEVLTKN 756


>gi|32479525 potassium voltage-gated channel, KQT-like subfamily,
           member 1 isoform 2 [Homo sapiens]
          Length = 549

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 59  SEDLKKHGATVLTALGGILKKKGHHEAEIK 88
           +EDL   G T+LT +  I + + HH A IK
Sbjct: 359 AEDLDLEGETLLTPITHISQLREHHRATIK 388


>gi|32479527 potassium voltage-gated channel, KQT-like subfamily,
           member 1 isoform 1 [Homo sapiens]
          Length = 676

 Score = 27.3 bits (59), Expect = 5.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 59  SEDLKKHGATVLTALGGILKKKGHHEAEIK 88
           +EDL   G T+LT +  I + + HH A IK
Sbjct: 486 AEDLDLEGETLLTPITHISQLREHHRATIK 515


>gi|4503355 dedicator of cytokinesis 1 [Homo sapiens]
          Length = 1865

 Score = 26.9 bits (58), Expect = 6.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 32   RLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTAL 73
            R  + HPE  EK +K K L +      +E ++ HG  V  AL
Sbjct: 1549 RYLQEHPEAHEKIEKLKDLIAWQIPFLAEGIRIHGDKVTEAL 1590


>gi|194018490 ATPase family, AAA domain containing 3C [Homo
          sapiens]
          Length = 411

 Score = 26.9 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 41 LEKFDKFKHLKSEDEMKASEDLKKHGATVLTAL 73
          LE+  K K L +ED  K  E ++KH  T L ++
Sbjct: 18 LEQQSKLKQLVNEDLRKQEESVQKHHQTFLESI 50


>gi|105990532 apolipoprotein B precursor [Homo sapiens]
          Length = 4563

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 35   KGHPETLEKFDKFKHLKSEDEM 56
            K + ET  KFDK+K  KS DE+
Sbjct: 3221 KSYNETKIKFDKYKAEKSHDEL 3242


>gi|13375616 fatty acid desaturase 3 [Homo sapiens]
          Length = 445

 Score = 26.6 bits (57), Expect = 9.1
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 82  HHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGDFGADA 128
           H+ + + PL +S   KH +  +   F++  +  V   K  GD   DA
Sbjct: 395 HNYSRVAPLVKSLCAKHGLSYEVKPFLTALVDIVRSLKKSGDIWLDA 441


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,932,773
Number of Sequences: 37866
Number of extensions: 240620
Number of successful extensions: 722
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 35
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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