Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 42476009
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42476009 highly divergent homeobox [Homo sapiens]
(690 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42476009 highly divergent homeobox [Homo sapiens] 1381 0.0
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 50 9e-06
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 50 9e-06
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 50 9e-06
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 43 0.001
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 38 0.027
gi|122937345 myosin VB [Homo sapiens] 38 0.027
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo... 38 0.036
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 37 0.047
gi|148664218 POU transcription factor [Homo sapiens] 37 0.061
gi|56961680 coiled-coil domain containing 147 [Homo sapiens] 36 0.10
gi|195976779 dysferlin isoform 1 [Homo sapiens] 36 0.14
gi|195976773 dysferlin isoform 5 [Homo sapiens] 36 0.14
gi|195976769 dysferlin isoform 6 [Homo sapiens] 36 0.14
gi|195976764 dysferlin isoform 14 [Homo sapiens] 36 0.14
gi|195976758 dysferlin isoform 11 [Homo sapiens] 36 0.14
gi|195976756 dysferlin isoform 10 [Homo sapiens] 36 0.14
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 36 0.14
gi|170784824 paired box 4 [Homo sapiens] 36 0.14
gi|148613886 regulatory factor X domain containing 2 [Homo sapiens] 36 0.14
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens] 35 0.23
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 35 0.23
gi|215982794 myosin VA isoform 2 [Homo sapiens] 35 0.30
gi|55770834 centromere protein F [Homo sapiens] 35 0.30
gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens] 35 0.30
gi|221219020 NYD-SP11 protein [Homo sapiens] 34 0.40
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 34 0.52
gi|227496489 multiple C2 domains, transmembrane 2 isoform 2 [Hom... 34 0.52
gi|227496440 multiple C2 domains, transmembrane 2 isoform 1 [Hom... 34 0.52
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 34 0.52
>gi|42476009 highly divergent homeobox [Homo sapiens]
Length = 690
Score = 1381 bits (3574), Expect = 0.0
Identities = 690/690 (100%), Positives = 690/690 (100%)
Query: 1 MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS 60
MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS
Sbjct: 1 MNLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS 60
Query: 61 SKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQ 120
SKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQ
Sbjct: 61 SKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQ 120
Query: 121 GTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQT 180
GTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQT
Sbjct: 121 GTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQT 180
Query: 181 SVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHRPCKIEPVGIQRSYKPEHTGPAL 240
SVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHRPCKIEPVGIQRSYKPEHTGPAL
Sbjct: 181 SVLNAGNSVFNHAKKNYGNSSVQASEMTVPQKPSVCHRPCKIEPVGIQRSYKPEHTGPAL 240
Query: 241 HNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGGNAPQKPSSAEGNCLSIAMET 300
HNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGGNAPQKPSSAEGNCLSIAMET
Sbjct: 241 HNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGGNAPQKPSSAEGNCLSIAMET 300
Query: 301 GDAEDEYAREEELASMRAQIPSYSRFYESGSSLRAENQSTTLPGPGRNMPNSQMVNIRDM 360
GDAEDEYAREEELASMRAQIPSYSRFYESGSSLRAENQSTTLPGPGRNMPNSQMVNIRDM
Sbjct: 301 GDAEDEYAREEELASMRAQIPSYSRFYESGSSLRAENQSTTLPGPGRNMPNSQMVNIRDM 360
Query: 361 SDNVLYQNRNYHLTPRTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISG 420
SDNVLYQNRNYHLTPRTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISG
Sbjct: 361 SDNVLYQNRNYHLTPRTSLHTASSTMYSNTNPLRSNFSPHFASSNQLRLSQNQNNYQISG 420
Query: 421 NLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC 480
NLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC
Sbjct: 421 NLTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDC 480
Query: 481 EIVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRN 540
EIVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRN
Sbjct: 481 EIVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRN 540
Query: 541 DEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQ 600
DEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQ
Sbjct: 541 DEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQ 600
Query: 601 VNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELE 660
VNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELE
Sbjct: 601 VNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELE 660
Query: 661 EMDFNHASLEPDDTSFSVSSLSEKNVSESL 690
EMDFNHASLEPDDTSFSVSSLSEKNVSESL
Sbjct: 661 EMDFNHASLEPDDTSFSVSSLSEKNVSESL 690
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 49.7 bits (117), Expect = 9e-06
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 504 PRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPN---EVV 560
P PAD S PE+ + EE P V E+ +++E L E +EE + E
Sbjct: 1250 PAASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEEEEDAAAETA 1309
Query: 561 PNDAR-AHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLD----YKNEEVKFI 615
ND A E+D H +T ++E E D+ V++ SFLD E++K
Sbjct: 1310 QNDDHDADDEDDGHLESTKKKELEEQPTRE-DVKEEPGVQE--SFLDANMQKSREKIKDK 1366
Query: 616 ENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTS 675
E +++ T V S +A DD E+ +L EE + H+ L+ +T
Sbjct: 1367 EETELDSEEEQPSHDTSVVSEQMAGSEDDHEEDSHTKEELIELKEEEEIPHSELDL-ETV 1425
Query: 676 FSVSSLSEKNVSE 688
+V SL+++ SE
Sbjct: 1426 QAVQSLTQEESSE 1438
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 49.7 bits (117), Expect = 9e-06
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 504 PRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPN---EVV 560
P PAD S PE+ + EE P V E+ +++E L E +EE + E
Sbjct: 1250 PAASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEEEEDAAAETA 1309
Query: 561 PNDAR-AHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLD----YKNEEVKFI 615
ND A E+D H +T ++E E D+ V++ SFLD E++K
Sbjct: 1310 QNDDHDADDEDDGHLESTKKKELEEQPTRE-DVKEEPGVQE--SFLDANMQKSREKIKDK 1366
Query: 616 ENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTS 675
E +++ T V S +A DD E+ +L EE + H+ L+ +T
Sbjct: 1367 EETELDSEEEQPSHDTSVVSEQMAGSEDDHEEDSHTKEELIELKEEEEIPHSELDL-ETV 1425
Query: 676 FSVSSLSEKNVSE 688
+V SL+++ SE
Sbjct: 1426 QAVQSLTQEESSE 1438
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 49.7 bits (117), Expect = 9e-06
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 504 PRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPN---EVV 560
P PAD S PE+ + EE P V E+ +++E L E +EE + E
Sbjct: 1250 PAASPADSSNSPETETKEPEVEEEEEKPRVSEEQRQSEEEQQELEEPEPEEEEDAAAETA 1309
Query: 561 PNDAR-AHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLD----YKNEEVKFI 615
ND A E+D H +T ++E E D+ V++ SFLD E++K
Sbjct: 1310 QNDDHDADDEDDGHLESTKKKELEEQPTRE-DVKEEPGVQE--SFLDANMQKSREKIKDK 1366
Query: 616 ENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPELEEMDFNHASLEPDDTS 675
E +++ T V S +A DD E+ +L EE + H+ L+ +T
Sbjct: 1367 EETELDSEEEQPSHDTSVVSEQMAGSEDDHEEDSHTKEELIELKEEEEIPHSELDL-ETV 1425
Query: 676 FSVSSLSEKNVSE 688
+V SL+++ SE
Sbjct: 1426 QAVQSLTQEESSE 1438
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 42.7 bits (99), Expect = 0.001
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 422 LTVPWITGCSRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCE 481
L P I G SR+R + + + R +A K + +N + E+I +A +LN++ E
Sbjct: 368 LNSPGIEGLSRRRKKRTSIETNIR-VALEKSFLENQKPT-----SEEITMIADQLNMEKE 421
Query: 482 IVRTWIGNRRRKYRLMGIEVPPPRGGPADFSEQ---PESGSLSALTP 525
++R W NRR+K + + PP GG + + P SL A TP
Sbjct: 422 VIRVWFCNRRQKEKRIN---PPSSGGTSSSPIKAIFPSPTSLVATTP 465
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 38.1 bits (87), Expect = 0.027
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 431 SRKRALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNR 490
S+KR + RT F+ + + L Y++ G ++I +A ELN D E+VR W NR
Sbjct: 232 SKKR--KRRTSFTPQAIEALNAYFEKNPLPTG----QEITEIAKELNYDREVVRVWFCNR 285
Query: 491 RR 492
R+
Sbjct: 286 RQ 287
>gi|122937345 myosin VB [Homo sapiens]
Length = 1848
Score = 38.1 bits (87), Expect = 0.027
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 553 QEEPNEVVPNDARAHKE----EDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFL--- 605
QEE + RAH E ED H+ D ++ + D E+ + + E EQ+N+ +
Sbjct: 982 QEEVESLRTELQRAHSERKILEDAHSREKDELRKRVADLEQENALLKDEKEQLNNQILCQ 1041
Query: 606 ---DYKNEEVK--FIENELEIQKQKYFKLQTFVRSLI-LAMKADDKEQQQALLSDLPPEL 659
++ VK ++ ELE ++ +Y Q V+ L + D+ + ++ P
Sbjct: 1042 SKDEFAQNSVKENLMKKELEEERSRY---QNLVKEYSQLEQRYDNLRDEMTIIKQTPGHR 1098
Query: 660 EEMDFNHASLEPDDTSFSVSSLSEKNVSESL 690
N +SLE D S+S+ + ++L
Sbjct: 1099 RNPS-NQSSLESDSNYPSISTSEIGDTEDAL 1128
>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
sapiens]
Length = 623
Score = 37.7 bits (86), Expect = 0.036
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 502 PPPRGGPADFSEQPESGSLSALTPGEEAGPE----VGEDNDRNDEVSICLSEGSSQEEPN 557
PP GGP Q E+GS A +P E A PE E + E + L + +S EEP
Sbjct: 65 PPSSGGPRVVERQWEAGSAGAASPEELASPEERACPEEPAAPSPEPRVWLEDPASPEEPG 124
Query: 558 EVVP 561
E P
Sbjct: 125 EPAP 128
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 37.4 bits (85), Expect = 0.047
Identities = 19/64 (29%), Positives = 39/64 (60%)
Query: 55 KRRKMSSKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPA 114
+RR +S S SG++ +G+S + ++V +V +++ +S SS S +++ + + SP
Sbjct: 680 RRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSEDMYADLASPV 739
Query: 115 SSSS 118
SS+S
Sbjct: 740 SSAS 743
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 37.0 bits (84), Expect = 0.061
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 434 RALQDRTQFSDRDLATL-KKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRR 492
R + RT TL K++ DN S E+I +A +L+++ E+VR W NRR+
Sbjct: 280 RKRKKRTSIETNIRLTLEKRFQDNPKPS-----SEEISMIAEQLSMEKEVVRVWFCNRRQ 334
Query: 493 KYRLMGIEVPPPRGGPADFSE-QPESGSLSALT 524
K + + V P P S SGSL L+
Sbjct: 335 KEKRINCPVATPIKPPVYNSRLVSPSGSLGPLS 367
>gi|56961680 coiled-coil domain containing 147 [Homo sapiens]
Length = 872
Score = 36.2 bits (82), Expect = 0.10
Identities = 34/166 (20%), Positives = 73/166 (43%), Gaps = 22/166 (13%)
Query: 532 EVGEDNDRNDEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESD 591
EV ++ D+ + L E +Q + + KEE HA++ +I+ +E S
Sbjct: 157 EVTKERDQLLSEVVKLRESLAQTTEQQ---QETERSKEEAEHAISQFQQEIQQRQNEASR 213
Query: 592 MISNSE-----VEQVNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKE 646
E ++Q+ + +D + E+K ++ ++ K++ KL+ +
Sbjct: 214 EFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLE------------QQLK 261
Query: 647 QQQALLSDLPPELEEMDFNHASLEPDDTSFSV--SSLSEKNVSESL 690
+Q+ L ELE+ +A L+ ++ S+ LS++N ++L
Sbjct: 262 EQKILNERAAKELEQFQMRNAKLQQENEQHSLVCEQLSQENQQKAL 307
>gi|195976779 dysferlin isoform 1 [Homo sapiens]
Length = 2119
Score = 35.8 bits (81), Expect = 0.14
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 500 EVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEV 559
E P P+GGP D +S L+PGE+ ++ +D+ + I L++G S P
Sbjct: 1454 ESPSPQGGPDD---------VSLLSPGEDVLIDI---DDKEPLIPIQLADGLSSLAPTNT 1501
Query: 560 VPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENEL 619
+ H+E E ID S E E+ S+L+ + +K + +L
Sbjct: 1502 ASPPSSPHEE-------------EFIDWWSKFFASIGEREKCGSYLEKDFDTLKVYDTQL 1548
Query: 620 E 620
E
Sbjct: 1549 E 1549
>gi|195976773 dysferlin isoform 5 [Homo sapiens]
Length = 2088
Score = 35.8 bits (81), Expect = 0.14
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 500 EVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEV 559
E P P+GGP D +S L+PGE+ ++ +D+ + I L++G S P
Sbjct: 1423 ESPSPQGGPDD---------VSLLSPGEDVLIDI---DDKEPLIPIQLADGLSSLAPTNT 1470
Query: 560 VPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENEL 619
+ H+E E ID S E E+ S+L+ + +K + +L
Sbjct: 1471 ASPPSSPHEE-------------EFIDWWSKFFASIGEREKCGSYLEKDFDTLKVYDTQL 1517
Query: 620 E 620
E
Sbjct: 1518 E 1518
>gi|195976769 dysferlin isoform 6 [Homo sapiens]
Length = 2102
Score = 35.8 bits (81), Expect = 0.14
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 500 EVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEV 559
E P P+GGP D +S L+PGE+ ++ +D+ + I L++G S P
Sbjct: 1437 ESPSPQGGPDD---------VSLLSPGEDVLIDI---DDKEPLIPIQLADGLSSLAPTNT 1484
Query: 560 VPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENEL 619
+ H+E E ID S E E+ S+L+ + +K + +L
Sbjct: 1485 ASPPSSPHEE-------------EFIDWWSKFFASIGEREKCGSYLEKDFDTLKVYDTQL 1531
Query: 620 E 620
E
Sbjct: 1532 E 1532
>gi|195976764 dysferlin isoform 14 [Homo sapiens]
Length = 2118
Score = 35.8 bits (81), Expect = 0.14
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 500 EVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEV 559
E P P+GGP D +S L+PGE+ ++ +D+ + I L++G S P
Sbjct: 1453 ESPSPQGGPDD---------VSLLSPGEDVLIDI---DDKEPLIPIQLADGLSSLAPTNT 1500
Query: 560 VPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENEL 619
+ H+E E ID S E E+ S+L+ + +K + +L
Sbjct: 1501 ASPPSSPHEE-------------EFIDWWSKFFASIGEREKCGSYLEKDFDTLKVYDTQL 1547
Query: 620 E 620
E
Sbjct: 1548 E 1548
>gi|195976758 dysferlin isoform 11 [Homo sapiens]
Length = 2101
Score = 35.8 bits (81), Expect = 0.14
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 500 EVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEV 559
E P P+GGP D +S L+PGE+ ++ +D+ + I L++G S P
Sbjct: 1436 ESPSPQGGPDD---------VSLLSPGEDVLIDI---DDKEPLIPIQLADGLSSLAPTNT 1483
Query: 560 VPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENEL 619
+ H+E E ID S E E+ S+L+ + +K + +L
Sbjct: 1484 ASPPSSPHEE-------------EFIDWWSKFFASIGEREKCGSYLEKDFDTLKVYDTQL 1530
Query: 620 E 620
E
Sbjct: 1531 E 1531
>gi|195976756 dysferlin isoform 10 [Homo sapiens]
Length = 2087
Score = 35.8 bits (81), Expect = 0.14
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 500 EVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEV 559
E P P+GGP D +S L+PGE+ ++ +D+ + I L++G S P
Sbjct: 1422 ESPSPQGGPDD---------VSLLSPGEDVLIDI---DDKEPLIPIQLADGLSSLAPTNT 1469
Query: 560 VPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIENEL 619
+ H+E E ID S E E+ S+L+ + +K + +L
Sbjct: 1470 ASPPSSPHEE-------------EFIDWWSKFFASIGEREKCGSYLEKDFDTLKVYDTQL 1516
Query: 620 E 620
E
Sbjct: 1517 E 1517
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 35.8 bits (81), Expect = 0.14
Identities = 23/80 (28%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 578 DNVKIEIIDDEESDMIS-NSEVEQVNSFLDYKNEEVKFIENELEIQKQKYFKL-QTFVRS 635
+N+K+++ ++ E ++ +EVE + LD +E + +++EL+ QK+ + T +R+
Sbjct: 1666 ENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRN 1725
Query: 636 LILAMKAD--DKEQQQALLS 653
L+ +K+ KE+QQ LS
Sbjct: 1726 LVERLKSQLALKEKQQKALS 1745
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 35.8 bits (81), Expect = 0.14
Identities = 35/109 (32%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 437 QDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYR- 495
++RT FS L+K + G SV R K+ A AT L D VR W NRR K+R
Sbjct: 164 RNRTIFSPSQAEALEKEFQRGQYP-DSVARGKL-ATATSLPEDT--VRVWFSNRRAKWRR 219
Query: 496 -------------LMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGP 531
G+ VP G + P S +AL E GP
Sbjct: 220 QEKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEPLGP 268
>gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]
Length = 1460
Score = 35.8 bits (81), Expect = 0.14
Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 14/193 (7%)
Query: 61 SKNSESGTATTGTSLSAPDITVRNVVNIARPSSQQSSWTSANNDVIVTGIYSPASSSSRQ 120
S + S T TT S S P I +VV++ P S+ S SA V P +SS
Sbjct: 492 SASVSSATGTTEESRSVPQIKNGSVVSLQSPGSRSS---SAGGTSAVEVKVEPETSSDEH 548
Query: 121 GTNKHTDTQITEAHKIPIQKTATKNDTEFQLHIPVQRQVAHCKNASLLLGEKTIILSRQT 180
++ +A + P K++T+ L P V K A+ + ++T SR
Sbjct: 549 PVQCQENSDEAKAPQTPSALLGQKSNTDGALQKPSNEGVIEIK-ATKVCDQRTKCKSRCN 607
Query: 181 SVL-------NAGNSVFNHAKKN--YGNSSVQASEMTVPQKPSVCHR-PCKIEPVGIQRS 230
+L N + A +N + +SS + ++ + P +C + P K +Q +
Sbjct: 608 EMLPGTSTGNNQSTITLSVASQNLTFTSSSSPPNGDSINKDPKLCTKSPRKRLSSTLQET 667
Query: 231 YKPEHTGPALHNL 243
P P + L
Sbjct: 668 QVPPVKKPIVEQL 680
>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
Length = 637
Score = 35.0 bits (79), Expect = 0.23
Identities = 24/75 (32%), Positives = 32/75 (42%)
Query: 496 LMGIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEE 555
L G PPP G A + SG+ P E + E N VS+ LSE +
Sbjct: 90 LRGPAAPPPPAGGAANNHGAGSGAGGRAAPVESSQEEQSLCEGSNSAVSMELSEPIVENG 149
Query: 556 PNEVVPNDARAHKEE 570
E+ P ++ HKEE
Sbjct: 150 ETEMSPEESWEHKEE 164
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 35.0 bits (79), Expect = 0.23
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 498 GIEVPPPRGGPADFSEQPESGSLSALTPGEEAGPE-VGEDNDRNDEVSICLSEGSSQEEP 556
G EV G + E+PES A P +E GP+ V E +D S EE
Sbjct: 268 GQEVDYMSDGSSSSQEEPES---KAKAPQQEEGPKGVDEQSD-------------SSEES 311
Query: 557 NEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEVE 599
E P + +EE+ A T K EESD S+++
Sbjct: 312 EEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDID 354
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 34.7 bits (78), Expect = 0.30
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 533 VGEDND-RNDEVSICLSEGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESD 591
V E+ D R +EV I S+ SQ+E + P D D + +T + +E +
Sbjct: 1255 VSEELDVRKEEVLILRSQLVSQKEA--IQPKD-------DKNTMTDSTILLEDVQK---- 1301
Query: 592 MISNSEVEQVNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQAL 651
M E+ Q L N + +E++L+ QK+ + +R I ++K ++ QQQ L
Sbjct: 1302 MKDKGEIAQAYIGLKETN---RLLESQLQSQKRSHENEAEALRGEIQSLKEENNRQQQLL 1358
Query: 652 LSD--LPPE 658
+ LPPE
Sbjct: 1359 AQNLQLPPE 1367
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 34.7 bits (78), Expect = 0.30
Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 549 EGSSQEEPNEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEES-----DMISNSE--VEQV 601
E ++ E + D + + +++T + +K+ + D E+ D++ E +EQ+
Sbjct: 525 EMKAKNTSQETMLRDLQEKINQQENSLTLEKLKLAVADLEKQRDCSQDLLKKREHHIEQL 584
Query: 602 NSFLDYKNEEVKFIENELEIQKQKY---------FKLQTFVRSLILAMKADDKEQQQALL 652
N L +E K + + LE++K++Y F +L +KE Q+ +
Sbjct: 585 NDKLSKTEKESKALLSALELKKKEYEELKEEKTLFSCWKSENEKLLTQMESEKENLQSKI 644
Query: 653 SDL-----PPELEEMDFNH--ASLEPDDTSFSVSSLSEKNVSES 689
+ L +++ ++N +LE D + SV + NV +S
Sbjct: 645 NHLETCLKTQQIKSHEYNERVRTLEMDRENLSVEIRNLHNVLDS 688
>gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]
Length = 1444
Score = 34.7 bits (78), Expect = 0.30
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 6/115 (5%)
Query: 449 TLKKYWDNGMTSLGSVCREKIEAVATELNVDC--EIVRTWIGNRRRKYR----LMGIEVP 502
T+K W + S S + E + L + W R +R L G E P
Sbjct: 960 TVKSQWTLEVPSSSSCANLETERNSDPLQPQAPRREITGWDEKALRSFREFSGLKGAEAP 1019
Query: 503 PPRGGPADFSEQPESGSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPN 557
P + GP+ P S +L G+E G +G + + + + E S + P+
Sbjct: 1020 PNQKGPSGVQPNPAETSPISLAEGKELGTHLGHSSPQIRQGGVPGPESSKESSPS 1074
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 34.3 bits (77), Expect = 0.40
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 18/133 (13%)
Query: 511 FSEQPES--------GSLSALTPGEEAGPEVGEDNDRNDEVSICLSEGSSQEEPNEVVPN 562
FSE+ ES SLS+ E E E+ + +E E +E+ E
Sbjct: 2226 FSEEMESLLDELEKQESLSSEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEE 2285
Query: 563 DARAHKEEDHHAVTTDNVKI-----EIIDDEESDMISNSEVEQVNSFLDYKNEEVKFIEN 617
+ + K+E + ++ EI+ +EE++ +S+ E E+ + L+ + + K I
Sbjct: 2286 EKKKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSDEEEEEESCSLEEEVDREKEI-- 2343
Query: 618 ELEIQKQKYFKLQ 630
++K+K FKLQ
Sbjct: 2344 ---LKKEKQFKLQ 2353
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 33.9 bits (76), Expect = 0.52
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 557 NEVVPNDARAHKEEDHHAVTTDNVKIEIIDDEESDMISNSEV-------EQVNSFLDYKN 609
NE+ + KE+ T +++ + D + + N E+ +++N L KN
Sbjct: 1122 NELEELQVQLQKEKKQLQKTMQELEL-VKKDAQQTTLMNMEIADYERLMKELNQKLTNKN 1180
Query: 610 EEVKFIENELEIQKQKYFKLQTFVRSL 636
+++ +E E++IQKQK LQ + SL
Sbjct: 1181 NKIEDLEQEIKIQKQKQETLQEEITSL 1207
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 599 EQVNSFLDYKNEEVKFIENELEIQKQKYFKLQTFVRSLILAMKADDKEQQQALLSDLPPE 658
+Q+++ D K E V ++N +E Q Y K ++ +L +KA +E+ + L+ +
Sbjct: 203 KQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQIEAS 262
Query: 659 LEEMDFNHASL-EPDDTSFSVSSLSEKNVSE 688
+E + L E + SEKN+ +
Sbjct: 263 AKEHEAEINKLNELKENLVKQCEASEKNIQK 293
>gi|227496489 multiple C2 domains, transmembrane 2 isoform 2 [Homo
sapiens]
Length = 823
Score = 33.9 bits (76), Expect = 0.52
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 74 SLSAPDIT-VRNVVNIARP-SSQQSSWTSANNDVIVTGIYSPASSSSRQGTNKHTDTQIT 131
SLS PD+ + RP S QSS+TS + + GI+ +SSSS + + + D
Sbjct: 49 SLSVPDLLEAEALAPEGRPYSGPQSSYTSVPSSLSTAGIFPKSSSSSLKQSEEELDWSQE 108
Query: 132 EAHKIPIQKTATKNDTEFQLHIPVQRQ 158
EA + + +T D+E P +R+
Sbjct: 109 EASHLHVVET----DSEEAYASPAERR 131
>gi|227496440 multiple C2 domains, transmembrane 2 isoform 1 [Homo
sapiens]
Length = 878
Score = 33.9 bits (76), Expect = 0.52
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 74 SLSAPDIT-VRNVVNIARP-SSQQSSWTSANNDVIVTGIYSPASSSSRQGTNKHTDTQIT 131
SLS PD+ + RP S QSS+TS + + GI+ +SSSS + + + D
Sbjct: 49 SLSVPDLLEAEALAPEGRPYSGPQSSYTSVPSSLSTAGIFPKSSSSSLKQSEEELDWSQE 108
Query: 132 EAHKIPIQKTATKNDTEFQLHIPVQRQ 158
EA + + +T D+E P +R+
Sbjct: 109 EASHLHVVET----DSEEAYASPAERR 131
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 33.9 bits (76), Expect = 0.52
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 238 PALHNLCGQKPTIRDPYCRTQNLEIREVFSLAVSDYPQRILGGNAPQKPSSA-EGNCLSI 296
PA G + + D + E + AV PQ++ GG AP KP+SA +G S
Sbjct: 458 PAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESS 517
Query: 297 AMETGD--AEDEYAREEELASMRAQIPSYSRFYESGSSLRAEN 337
+ D +E+E + + S R Q P + S+L A+N
Sbjct: 518 NSSSSDDSSEEEEEKLKGKGSPRPQAPKAN----GTSALTAQN 556
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,802,555
Number of Sequences: 37866
Number of extensions: 1268034
Number of successful extensions: 4445
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 4300
Number of HSP's gapped (non-prelim): 266
length of query: 690
length of database: 18,247,518
effective HSP length: 109
effective length of query: 581
effective length of database: 14,120,124
effective search space: 8203792044
effective search space used: 8203792044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.