Guide to the Human Genome
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Name: DYSF Sequence: fasta or formatted (2119aa) NCBI GI: 195976779
Description:

dysferlin isoform 1

Referenced in:

Additional Membrane Functions

Other entries for this name:
alt prot [2066aa] dysferlin isoform 9
alt prot [2087aa] dysferlin isoform 10
alt prot [2101aa] dysferlin isoform 11
alt prot [2111aa] dysferlin isoform 12
alt prot [2097aa] dysferlin isoform 13
alt prot [2118aa] dysferlin isoform 14
alt prot [2112aa] dysferlin isoform 7
alt prot [2102aa] dysferlin isoform 6
alt prot [2088aa] dysferlin isoform 5
alt prot [2098aa] dysferlin isoform 4
alt prot [2067aa] dysferlin isoform 3
alt prot [2081aa] dysferlin isoform 2
alt prot [2080aa] dysferlin isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8        122           2
 C cysteine            1.8         38           2
 D aspartate           6.5        138           2
 E glutamate           7.4        156           3
 F phenylalanine       4.9        103           2
 G glycine             6.1        130           3
 H histidine           1.8         39           2
 I isoleucine          4.8        102           2
 K lysine              5.9        124           2
 L leucine            10.3        219           3
 M methionine          2.0         42           1
 N asparagine          3.0         63           1
 P proline             7.5        159           3
 Q glutamine           4.2         88           3
 R arginine            6.0        128           4
 S serine              6.1        129           2
 T threonine           5.0        107           2
 V valine              5.7        121           3
 W tryptophan          2.1         44           2
 Y tyrosine            3.2         67           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dysferlin isoform 1 
DYSF                  0.988   dysferlin isoform 14 
DYSF                  0.988   dysferlin isoform 4 
DYSF                  0.985   dysferlin isoform 7 
DYSF                  0.981   dysferlin isoform 5 
DYSF                  0.979   dysferlin isoform 6 
DYSF                  0.976   dysferlin isoform 13 
DYSF                  0.973   dysferlin isoform 12 
DYSF                  0.969   dysferlin isoform 10 
DYSF                  0.969   dysferlin isoform 3 
DYSF                  0.967   dysferlin isoform 11 
DYSF                  0.966   dysferlin isoform 2 
DYSF                  0.957   dysferlin isoform 9 
DYSF                  0.955   dysferlin isoform 8 
MYOF                  0.542   myoferlin isoform b 
MYOF                  0.540   myoferlin isoform a 
FER1L5                0.316   fer-1-like 5 isoform 2 
OTOF                  0.162   otoferlin isoform b 
OTOF                  0.161   otoferlin isoform c 
OTOF                  0.161   otoferlin isoform a 
FER1L6                0.160   fer-1-like 6 
OTOF                  0.160   otoferlin isoform d 
FER1L5                0.158   fer-1-like 5 isoform 1 
RASAL1                0.009   RAS protein activator like 1 
PCLO                  0.007   piccolo isoform 2 
PCLO                  0.007   piccolo isoform 1 
MCTP1                 0.007   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.007   multiple C2 domains, transmembrane 1 isoform L [Hom...
LOC100132214          0.006   PREDICTED: similar to calcium-promoted Ras inactiva...
LOC100132214          0.006   PREDICTED: similar to calcium-promoted Ras inactiva...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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