Search of human proteins with 41393606

Search of human proteins with 41393606

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41393606 reticulon 3 isoform d [Homo sapiens]
         (241 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41393606 reticulon 3 isoform d [Homo sapiens]                      472   e-133
gi|5174655 reticulon 3 isoform a [Homo sapiens]                       392   e-109
gi|41393604 reticulon 3 isoform c [Homo sapiens]                      380   e-106
gi|41393608 reticulon 3 isoform b [Homo sapiens]                      298   3e-81
gi|24431933 reticulon 4 isoform B [Homo sapiens]                      215   2e-56
gi|47519490 reticulon 4 isoform D [Homo sapiens]                      214   7e-56
gi|47519562 reticulon 4 isoform E [Homo sapiens]                      209   2e-54
gi|24431935 reticulon 4 isoform A [Homo sapiens]                      209   2e-54
gi|5902016 reticulon 4 isoform C [Homo sapiens]                       207   7e-54
gi|45827778 reticulon 1 isoform B [Homo sapiens]                      204   4e-53
gi|10863935 reticulon 1 isoform A [Homo sapiens]                      204   4e-53
gi|45827776 reticulon 1 isoform C [Homo sapiens]                      200   8e-52
gi|5032055 reticulon 2 isoform A [Homo sapiens]                       143   1e-34
gi|46255007 reticulon 2 isoform C [Homo sapiens]                      143   1e-34
gi|46255005 reticulon 2 isoform B [Homo sapiens]                      143   1e-34
gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform...    30   1.9  
gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform ...    30   1.9  
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ...    30   1.9  
gi|84993742 tripartite motif-containing 71 [Homo sapiens]              30   2.5  
gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]    30   2.5  
gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]            29   3.2  
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom...    29   3.2  
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]         29   3.2  
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom...    29   3.2  
gi|13994287 BTE-binding protein 4 [Homo sapiens]                       29   4.2  
gi|94536854 thrombospondin, type I, domain containing 4 [Homo sa...    28   5.5  
gi|115334682 SNAP25-interacting protein [Homo sapiens]                 28   5.5  
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]                      28   5.5  
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]          28   5.5  
gi|149944536 ichthyin protein [Homo sapiens]                           28   7.1  

>gi|41393606 reticulon 3 isoform d [Homo sapiens]
          Length = 241

 Score =  472 bits (1215), Expect = e-133
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT 60
           MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT
Sbjct: 1   MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT 60

Query: 61  GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 120
           GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL
Sbjct: 61  GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 120

Query: 121 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 180
           DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG
Sbjct: 121 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 180

Query: 181 ITLLILAELLIFSVPIVYEKYKDPSKTPWNRQKKGRISTWKPEMQQLLKHHLIVITSLLV 240
           ITLLILAELLIFSVPIVYEKYKDPSKTPWNRQKKGRISTWKPEMQQLLKHHLIVITSLLV
Sbjct: 181 ITLLILAELLIFSVPIVYEKYKDPSKTPWNRQKKGRISTWKPEMQQLLKHHLIVITSLLV 240

Query: 241 L 241
           L
Sbjct: 241 L 241


>gi|5174655 reticulon 3 isoform a [Homo sapiens]
          Length = 236

 Score =  392 bits (1007), Expect = e-109
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT 60
           MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT
Sbjct: 1   MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKT 60

Query: 61  GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 120
           GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL
Sbjct: 61  GFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYL 120

Query: 121 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 180
           DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG
Sbjct: 121 DVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNG 180

Query: 181 ITLLILAELLIFSVPIVYEKYK 202
           ITLLILAELLIFSVPIVYEKYK
Sbjct: 181 ITLLILAELLIFSVPIVYEKYK 202


>gi|41393604 reticulon 3 isoform c [Homo sapiens]
          Length = 255

 Score =  380 bits (977), Expect = e-106
 Identities = 202/221 (91%), Positives = 202/221 (91%), Gaps = 19/221 (8%)

Query: 1   MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA------------- 47
           MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA             
Sbjct: 1   MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCADSFVSSSSSQPVS 60

Query: 48  ------VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 101
                 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK
Sbjct: 61  LFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYK 120

Query: 102 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 161
           SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS
Sbjct: 121 SVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDS 180

Query: 162 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
           LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK
Sbjct: 181 LKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 221


>gi|41393608 reticulon 3 isoform b [Homo sapiens]
          Length = 1013

 Score =  298 bits (763), Expect = 3e-81
 Identities = 155/156 (99%), Positives = 156/156 (100%)

Query: 47  AVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 106
           +VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA
Sbjct: 824 SVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 883

Query: 107 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 166
           VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV
Sbjct: 884 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 943

Query: 167 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
           FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK
Sbjct: 944 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 979



 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA 47
          MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA
Sbjct: 1  MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSSCA 47


>gi|24431933 reticulon 4 isoform B [Homo sapiens]
          Length = 373

 Score =  215 bits (548), Expect = 2e-56
 Identities = 104/181 (57%), Positives = 137/181 (75%), Gaps = 1/181 (0%)

Query: 22  PSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVIS 81
           P AP     P   PA   +  SS   V DL++WRD+KKTG VFG +L +LLSL  FS++S
Sbjct: 161 PPAPAPAAPPST-PAAPKRRGSSGSVVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVS 219

Query: 82  VVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVH 141
           V +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL+ ++ +S E    Y N+A+ H
Sbjct: 220 VTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGH 279

Query: 142 INRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKY 201
           +N  +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE++
Sbjct: 280 VNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERH 339

Query: 202 K 202
           +
Sbjct: 340 Q 340


>gi|47519490 reticulon 4 isoform D [Homo sapiens]
          Length = 392

 Score =  214 bits (544), Expect = 7e-56
 Identities = 108/188 (57%), Positives = 141/188 (75%), Gaps = 8/188 (4%)

Query: 22  PSAPGGGGSPG-------ACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSL 74
           P+AP   GS G       A PA       SS AV DL++WRD+KKTG VFG +L +LLSL
Sbjct: 173 PAAPKRRGSSGSVDETLFALPAASEPVIRSS-AVVDLLYWRDIKKTGVVFGASLFLLLSL 231

Query: 75  AAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNY 134
             FS++SV +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL+ ++ +S E    Y
Sbjct: 232 TVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKY 291

Query: 135 MNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSV 194
            N+A+ H+N  +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG+TLLILA + +FSV
Sbjct: 292 SNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSV 351

Query: 195 PIVYEKYK 202
           P++YE+++
Sbjct: 352 PVIYERHQ 359


>gi|47519562 reticulon 4 isoform E [Homo sapiens]
          Length = 986

 Score =  209 bits (532), Expect = 2e-54
 Identities = 101/183 (55%), Positives = 136/183 (74%)

Query: 20  AEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSV 79
           AE   P         P+    +  S  +V DL++WRD+KKTG VFG +L +LLSL  FS+
Sbjct: 771 AEKKLPSDTEKEDRSPSAIFSAELSKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSI 830

Query: 80  ISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAM 139
           +SV +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL+ ++ +S E    Y N+A+
Sbjct: 831 VSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSAL 890

Query: 140 VHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYE 199
            H+N  +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE
Sbjct: 891 GHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYE 950

Query: 200 KYK 202
           +++
Sbjct: 951 RHQ 953


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score =  209 bits (532), Expect = 2e-54
 Identities = 101/183 (55%), Positives = 136/183 (74%)

Query: 20   AEPSAPGGGGSPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSV 79
            AE   P         P+    +  S  +V DL++WRD+KKTG VFG +L +LLSL  FS+
Sbjct: 977  AEKKLPSDTEKEDRSPSAIFSAELSKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSI 1036

Query: 80   ISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAM 139
            +SV +Y+ LALLSVTISFRIYK VIQA+QKS+EGHPF+AYL+ ++ +S E    Y N+A+
Sbjct: 1037 VSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSAL 1096

Query: 140  VHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYE 199
             H+N  +K + RLFLV+DLVDSLK AV MW+ TYVGA+FNG+TLLILA + +FSVP++YE
Sbjct: 1097 GHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYE 1156

Query: 200  KYK 202
            +++
Sbjct: 1157 RHQ 1159


>gi|5902016 reticulon 4 isoform C [Homo sapiens]
          Length = 199

 Score =  207 bits (527), Expect = 7e-54
 Identities = 96/155 (61%), Positives = 128/155 (82%)

Query: 48  VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
           V DL++WRD+KKTG VFG +L +LLSL  FS++SV +Y+ LALLSVTISFRIYK VIQA+
Sbjct: 12  VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71

Query: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
           QKS+EGHPF+AYL+ ++ +S E    Y N+A+ H+N  +K + RLFLV+DLVDSLK AV 
Sbjct: 72  QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131

Query: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
           MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++
Sbjct: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQ 166


>gi|45827778 reticulon 1 isoform B [Homo sapiens]
          Length = 356

 Score =  204 bits (520), Expect = 4e-53
 Identities = 105/189 (55%), Positives = 140/189 (74%), Gaps = 5/189 (2%)

Query: 16  SSFGAEPSAPGGGG--SPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLS 73
           SS    P+A  G G   PGA P L   +   +    DL++WRD+K+TG VFG+ L++L S
Sbjct: 138 SSSNQSPAATKGPGPLGPGAPPPLLFLNKQKAI---DLLYWRDIKQTGIVFGSFLLLLFS 194

Query: 74  LAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHN 133
           L  FSV+SVV+YL LA LS TISFRIYKSV+QAVQK++EGHPFKAYL+++ITLS E    
Sbjct: 195 LTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQK 254

Query: 134 YMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFS 193
           Y +    ++N  LK + RLFLV+DLVDSLK AV MWL+TYVGA+FNG+TLL++A + +F+
Sbjct: 255 YTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFT 314

Query: 194 VPIVYEKYK 202
           +P+VY K++
Sbjct: 315 LPVVYVKHQ 323


>gi|10863935 reticulon 1 isoform A [Homo sapiens]
          Length = 776

 Score =  204 bits (520), Expect = 4e-53
 Identities = 105/189 (55%), Positives = 140/189 (74%), Gaps = 5/189 (2%)

Query: 16  SSFGAEPSAPGGGG--SPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLS 73
           SS    P+A  G G   PGA P L   +   +    DL++WRD+K+TG VFG+ L++L S
Sbjct: 558 SSSNQSPAATKGPGPLGPGAPPPLLFLNKQKAI---DLLYWRDIKQTGIVFGSFLLLLFS 614

Query: 74  LAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHN 133
           L  FSV+SVV+YL LA LS TISFRIYKSV+QAVQK++EGHPFKAYL+++ITLS E    
Sbjct: 615 LTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQK 674

Query: 134 YMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFS 193
           Y +    ++N  LK + RLFLV+DLVDSLK AV MWL+TYVGA+FNG+TLL++A + +F+
Sbjct: 675 YTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFT 734

Query: 194 VPIVYEKYK 202
           +P+VY K++
Sbjct: 735 LPVVYVKHQ 743


>gi|45827776 reticulon 1 isoform C [Homo sapiens]
          Length = 208

 Score =  200 bits (509), Expect = 8e-52
 Identities = 94/153 (61%), Positives = 126/153 (82%)

Query: 50  DLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQK 109
           DL++WRD+K+TG VFG+ L++L SL  FSV+SVV+YL LA LS TISFRIYKSV+QAVQK
Sbjct: 23  DLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK 82

Query: 110 SEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMW 169
           ++EGHPFKAYL+++ITLS E    Y +    ++N  LK + RLFLV+DLVDSLK AV MW
Sbjct: 83  TDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMW 142

Query: 170 LMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
           L+TYVGA+FNG+TLL++A + +F++P+VY K++
Sbjct: 143 LLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQ 175


>gi|5032055 reticulon 2 isoform A [Homo sapiens]
          Length = 545

 Score =  143 bits (361), Expect = 1e-34
 Identities = 68/155 (43%), Positives = 107/155 (69%)

Query: 48  VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
           V DL++W+D + +G VF   ++ LL L  FS++SV ++L L LL  TIS R+Y+ V+QAV
Sbjct: 345 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 404

Query: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
            + +  +PF+AYLDVD+TL+ E      +     +  A   +   FLVEDLVDSLKLA+ 
Sbjct: 405 HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 464

Query: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
            +++T+VGA+FNG+TLLIL  + +F++P++Y +++
Sbjct: 465 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQ 499


>gi|46255007 reticulon 2 isoform C [Homo sapiens]
          Length = 205

 Score =  143 bits (361), Expect = 1e-34
 Identities = 68/155 (43%), Positives = 107/155 (69%)

Query: 48  VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
           V DL++W+D + +G VF   ++ LL L  FS++SV ++L L LL  TIS R+Y+ V+QAV
Sbjct: 5   VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 64

Query: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
            + +  +PF+AYLDVD+TL+ E      +     +  A   +   FLVEDLVDSLKLA+ 
Sbjct: 65  HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 124

Query: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
            +++T+VGA+FNG+TLLIL  + +F++P++Y +++
Sbjct: 125 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQ 159


>gi|46255005 reticulon 2 isoform B [Homo sapiens]
          Length = 472

 Score =  143 bits (361), Expect = 1e-34
 Identities = 68/155 (43%), Positives = 107/155 (69%)

Query: 48  VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107
           V DL++W+D + +G VF   ++ LL L  FS++SV ++L L LL  TIS R+Y+ V+QAV
Sbjct: 272 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 331

Query: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167
            + +  +PF+AYLDVD+TL+ E      +     +  A   +   FLVEDLVDSLKLA+ 
Sbjct: 332 HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 391

Query: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
            +++T+VGA+FNG+TLLIL  + +F++P++Y +++
Sbjct: 392 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQ 426


>gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform c
           precursor [Homo sapiens]
          Length = 899

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 72  LSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSE 111
           LS   F  +SV+S L + L  V +SF IY S ++ +Q S+
Sbjct: 525 LSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQ 564


>gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform b
           precursor [Homo sapiens]
          Length = 844

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 72  LSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSE 111
           LS   F  +SV+S L + L  V +SF IY S ++ +Q S+
Sbjct: 470 LSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQ 509


>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
           precursor [Homo sapiens]
          Length = 961

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 72  LSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAVQKSE 111
           LS   F  +SV+S L + L  V +SF IY S ++ +Q S+
Sbjct: 587 LSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNSQ 626


>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
          Length = 868

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 4  PSAATQSHSISSSSFGAEPSAPGGGGSPGA 33
          P+  + + S SSSS     S+ GGGG PGA
Sbjct: 22 PAPLSSNSSASSSSSQTSTSSGGGGGGPGA 51


>gi|65786661 BTB (POZ) domain containing 11 isoform a [Homo sapiens]
          Length = 1104

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 4   PSAATQSHSISSSSFGAEPS------APGGG-GSPGACPALGTKSCSSSC 46
           P + + S    SS  GA P+      APGGG  S GAC A  + S  SSC
Sbjct: 264 PGSGSGSGPGPSSGPGAAPAADKEREAPGGGAASGGACSAASSASGGSSC 313


>gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
          Length = 422

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 1  MAEPSAATQSHSISSSSFGAEPSAPGGGGSPGACPALG 38
          M +P    Q         G + +APG GG PG  P  G
Sbjct: 1  MQQPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPG 38


>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
           sapiens]
          Length = 363

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 4   PSAATQSHSI--SSSSFGAEPSAPGGGGSPGA--CPALGTKSCSS 44
           P A+   +SI  SSSS G+    PGGGG PG    P+ G  + SS
Sbjct: 220 PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 264


>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
          Length = 948

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 10  SHSISSSSFGAEPSAPGGGGSPGACPALGTKSCSSS 45
           S ++++++  A P  PGG  SP +  A  + S SSS
Sbjct: 846 SAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSS 881


>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
           sapiens]
          Length = 385

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 4   PSAATQSHSI--SSSSFGAEPSAPGGGGSPGA--CPALGTKSCSS 44
           P A+   +SI  SSSS G+    PGGGG PG    P+ G  + SS
Sbjct: 242 PWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSS 286


>gi|13994287 BTE-binding protein 4 [Homo sapiens]
          Length = 252

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 4   PSAATQSHSISSSSFGAEPSAPGGGGSPGACPALGTKS 41
           P AA    S +SSS  A  S+P  G +PGA P+   KS
Sbjct: 91  PGAAPGGASPASSSSAA--SSPSSGRAPGAAPSAAAKS 126


>gi|94536854 thrombospondin, type I, domain containing 4 [Homo
          sapiens]
          Length = 1018

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 4  PSAATQSHSISS--SSFGAEPSAPGGGGSPGACPALGT-KSCSSSCA 47
          P  +TQ   +    ++ GA P   GGGG+PG   A G   +CS SC+
Sbjct: 25 PQPSTQHRKVPQRMAAEGA-PEDDGGGGAPGVWGAWGPWSACSRSCS 70


>gi|115334682 SNAP25-interacting protein [Homo sapiens]
          Length = 1183

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 8   TQSHSISSSSFGAEPSAP--GGGGSPGACPALGTKSCSSS 45
           T S  I  S+  A PSAP   GG S GA P  G    S+S
Sbjct: 596 TPSEKIEGSNGAATPSAPCGSGGRSSGATPVSGPPPPSAS 635


>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
          Length = 904

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5   SAATQSH-SISSSSFGAEPSAPGGGGSPG-ACPALGTKSCSSSCAVHDLIFW 54
           +AA  SH ++  S+    P+ P GGG+P  A P     S S+S A  D   W
Sbjct: 355 TAAAASHPAVPPSAPDPRPATPQGGGAPRVAAPQTTLSSSSTSAATVDPPAW 406


>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
          Length = 796

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 20  AEPSAPGG----GGSPGACPALGTKSCSSSCAVHDLIFWRDVKKTGFVFGT 66
           A P APGG    GG+PG      + S S+S +V ++      K+ G V  T
Sbjct: 288 APPGAPGGPACLGGTPGVSATSSSASSSTSSSVAEVGVGAGGKRPGSVSST 338


>gi|149944536 ichthyin protein [Homo sapiens]
          Length = 466

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 57  VKKTGFVFGTTLIMLLSLAAFSVIS-------VVSYLILALLSVTISFRIYKSVIQAVQK 109
           +K TGF+    L+++  L    VI+       ++ Y+I+  +    S    K +   ++ 
Sbjct: 254 MKDTGFIVFAVLLLVSCLILIFVIAPRYGQRNILIYIIICSVIGAFSVAAVKGLGITIKN 313

Query: 110 SEEG-----HPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKL 164
             +G     HP    L + + LS     N++N A+   N +L   I       +V +  +
Sbjct: 314 FFQGLPVVRHPLPYILSLILALSLSTQVNFLNRALDIFNTSLVFPIYYVFFTTVVVTSSI 373

Query: 165 AVF 167
            +F
Sbjct: 374 ILF 376


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,486,988
Number of Sequences: 37866
Number of extensions: 345537
Number of successful extensions: 2434
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2393
Number of HSP's gapped (non-prelim): 52
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.