Guide to the Human Genome
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Name: RTN2 Sequence: fasta or formatted (205aa) NCBI GI: 46255007
Description:

reticulon 2 isoform C

Referenced in:

Oligodendrocytes and Myelin

Other entries for this name:
alt prot [472aa] reticulon 2 isoform B
alt prot [545aa] reticulon 2 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         22           4
 C cysteine            1.0          2           1
 D aspartate           3.9          8           1
 E glutamate           2.0          4           1
 F phenylalanine       4.4          9           2
 G glycine             6.8         14           1
 H histidine           3.4          7           1
 I isoleucine          5.9         12           1
 K lysine              4.4          9           1
 L leucine            17.6         36           4
 M methionine          1.0          2           1
 N asparagine          1.5          3           1
 P proline             1.5          3           1
 Q glutamine           4.9         10           1
 R arginine            4.9         10           1
 S serine              6.8         14           1
 T threonine           6.8         14           1
 V valine              9.3         19           2
 W tryptophan          0.5          1           1
 Y tyrosine            2.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   reticulon 2 isoform C 
RTN2                  1.000   reticulon 2 isoform A 
RTN2                  0.978   reticulon 2 isoform B 
RTN1                  0.467   reticulon 1 isoform B 
RTN1                  0.467   reticulon 1 isoform C 
RTN1                  0.467   reticulon 1 isoform A 
RTN4                  0.446   reticulon 4 isoform B 
RTN4                  0.443   reticulon 4 isoform C 
RTN4                  0.440   reticulon 4 isoform D 
RTN4                  0.440   reticulon 4 isoform E 
RTN4                  0.440   reticulon 4 isoform A 
RTN3                  0.402   reticulon 3 isoform c 
RTN3                  0.397   reticulon 3 isoform b 
RTN3                  0.397   reticulon 3 isoform a 
RTN3                  0.321   reticulon 3 isoform d 
C2orf57               0.014   hypothetical protein LOC165100 
MPDZ                  0.011   multiple PDZ domain protein 
TLN1                  0.008   talin 1 
TPCN2                 0.008   two pore segment channel 2 
DOCK7                 0.008   dedicator of cytokinesis 7 
SLC2A9                0.008   solute carrier family 2, member 9 protein isoform 2 ...
SLC2A9                0.008   solute carrier family 2, member 9 protein isoform 1 ...
CASR                  0.005   calcium-sensing receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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