Guide to the Human Genome
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Name: RTN3 Sequence: fasta or formatted (255aa) NCBI GI: 41393604
Description:

reticulon 3 isoform c

Referenced in:

Oligodendrocytes and Myelin

Other entries for this name:
alt prot [241aa] reticulon 3 isoform d
alt prot [1013aa] reticulon 3 isoform b
alt prot [236aa] reticulon 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         24           2
 C cysteine            1.2          3           1
 D aspartate           3.5          9           1
 E glutamate           3.9         10           2
 F phenylalanine       5.5         14           1
 G glycine             5.5         14           4
 H histidine           2.4          6           1
 I isoleucine          8.2         21           2
 K lysine              6.3         16           3
 L leucine            10.6         27           2
 M methionine          2.4          6           1
 N asparagine          1.6          4           1
 P proline             3.5          9           1
 Q glutamine           3.1          8           1
 R arginine            2.0          5           1
 S serine             13.7         35           5
 T threonine           4.7         12           2
 V valine              8.6         22           2
 W tryptophan          0.8          2           1
 Y tyrosine            3.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   reticulon 3 isoform c 
RTN3                  0.901   reticulon 3 isoform a 
RTN3                  0.762   reticulon 3 isoform d 
RTN3                  0.725   reticulon 3 isoform b 
RTN4                  0.491   reticulon 4 isoform D 
RTN4                  0.472   reticulon 4 isoform E 
RTN4                  0.472   reticulon 4 isoform B 
RTN4                  0.472   reticulon 4 isoform A 
RTN4                  0.470   reticulon 4 isoform C 
RTN1                  0.453   reticulon 1 isoform C 
RTN1                  0.451   reticulon 1 isoform B 
RTN1                  0.451   reticulon 1 isoform A 
RTN2                  0.318   reticulon 2 isoform A 
RTN2                  0.318   reticulon 2 isoform C 
RTN2                  0.313   reticulon 2 isoform B 
TNRC18                0.024   trinucleotide repeat containing 18 
TNKS1BP1              0.021   tankyrase 1-binding protein 1 
C14orf4               0.021   chromosome 14 open reading frame 4 
RLIM                  0.017   ring finger protein, LIM domain interacting 
RLIM                  0.017   ring finger protein, LIM domain interacting 
ZC3H3                 0.015   zinc finger CCCH-type containing 3 
LOC729815             0.013   PREDICTED: hypothetical protein 
LOC729815             0.013   PREDICTED: hypothetical protein 
CDSN                  0.013   corneodesmosin precursor 
BTBD11                0.013   BTB (POZ) domain containing 11 isoform a 
KLF16                 0.013   BTE-binding protein 4 
SUZ12                 0.013   joined to JAZF1 
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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