Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RTN3 Sequence: fasta or formatted (1013aa) NCBI GI: 41393608
Description:

reticulon 3 isoform b

Referenced in:

Oligodendrocytes and Myelin

Other entries for this name:
alt prot [255aa] reticulon 3 isoform c
alt prot [241aa] reticulon 3 isoform d
alt prot [236aa] reticulon 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         65           2
 C cysteine            1.1         11           1
 D aspartate           6.6         67           2
 E glutamate           8.9         90           2
 F phenylalanine       3.5         35           1
 G glycine             5.0         51           4
 H histidine           2.2         22           1
 I isoleucine          5.9         60           2
 K lysine              7.7         78           3
 L leucine             8.3         84           2
 M methionine          1.5         15           1
 N asparagine          3.4         34           2
 P proline             5.3         54           2
 Q glutamine           3.4         34           2
 R arginine            2.4         24           1
 S serine             12.3        125           4
 T threonine           7.0         71           2
 V valine              6.8         69           2
 W tryptophan          0.7          7           1
 Y tyrosine            1.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   reticulon 3 isoform b 
RTN3                  0.172   reticulon 3 isoform c 
RTN3                  0.172   reticulon 3 isoform a 
RTN3                  0.139   reticulon 3 isoform d 
RTN4                  0.118   reticulon 4 isoform E 
RTN4                  0.118   reticulon 4 isoform A 
RTN4                  0.112   reticulon 4 isoform D 
RTN4                  0.112   reticulon 4 isoform C 
RTN4                  0.112   reticulon 4 isoform B 
RTN1                  0.106   reticulon 1 isoform B 
RTN1                  0.106   reticulon 1 isoform C 
RTN1                  0.106   reticulon 1 isoform A 
RTN2                  0.075   reticulon 2 isoform B 
RTN2                  0.074   reticulon 2 isoform A 
RTN2                  0.074   reticulon 2 isoform C 
RIF1                  0.012   RAP1 interacting factor 1 
DSPP                  0.012   dentin sialophosphoprotein preproprotein 
ZNF638                0.010   zinc finger protein 638 
ZNF638                0.010   zinc finger protein 638 
LOC729792             0.010   PREDICTED: hypothetical protein 
LOC729792             0.010   PREDICTED: hypothetical protein 
LOC729792             0.010   PREDICTED: hypothetical protein 
LOC100294501          0.010   PREDICTED: hypothetical protein 
LOC100294238          0.010   PREDICTED: hypothetical protein 
LOC100294204          0.010   PREDICTED: hypothetical protein 
LOC100294136          0.010   PREDICTED: hypothetical protein 
LOC100294091          0.010   PREDICTED: hypothetical protein 
LOC730401             0.010   PREDICTED: hypothetical protein 
ATF7IP                0.010   activating transcription factor 7 interacting protei...
MUC17                 0.009   mucin 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press