Guide to the Human Genome
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Name: RTN4 Sequence: fasta or formatted (199aa) NCBI GI: 5902016
Description:

reticulon 4 isoform C

Referenced in:

Oligodendrocytes and Myelin

Other entries for this name:
alt prot [373aa] reticulon 4 isoform B
alt prot [1192aa] reticulon 4 isoform A
alt prot [392aa] reticulon 4 isoform D
alt prot [986aa] reticulon 4 isoform E
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         17           1
 C cysteine            0.5          1           1
 D aspartate           5.0         10           2
 E glutamate           4.0          8           2
 F phenylalanine       5.0         10           1
 G glycine             5.0         10           1
 H histidine           2.0          4           1
 I isoleucine          7.5         15           1
 K lysine              8.5         17           2
 L leucine            14.6         29           3
 M methionine          1.5          3           1
 N asparagine          3.0          6           1
 P proline             1.5          3           1
 Q glutamine           3.5          7           1
 R arginine            3.5          7           2
 S serine              7.0         14           1
 T threonine           3.5          7           1
 V valine             10.1         20           2
 W tryptophan          1.5          3           1
 Y tyrosine            4.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   reticulon 4 isoform C 
RTN4                  0.936   reticulon 4 isoform E 
RTN4                  0.936   reticulon 4 isoform A 
RTN4                  0.931   reticulon 4 isoform B 
RTN4                  0.931   reticulon 4 isoform D 
RTN1                  0.698   reticulon 1 isoform C 
RTN1                  0.681   reticulon 1 isoform B 
RTN1                  0.681   reticulon 1 isoform A 
RTN3                  0.607   reticulon 3 isoform c 
RTN3                  0.607   reticulon 3 isoform b 
RTN3                  0.607   reticulon 3 isoform a 
RTN3                  0.504   reticulon 3 isoform d 
RTN2                  0.452   reticulon 2 isoform A 
RTN2                  0.452   reticulon 2 isoform C 
RTN2                  0.446   reticulon 2 isoform B 
GABBR1                0.014   gamma-aminobutyric acid (GABA) B receptor 1 isoform...
GABBR1                0.014   gamma-aminobutyric acid (GABA) B receptor 1 isoform ...
GABBR1                0.014   gamma-aminobutyric acid (GABA) B receptor 1 isoform ...
LNPEP                 0.011   leucyl/cystinyl aminopeptidase isoform 1 
LNPEP                 0.011   leucyl/cystinyl aminopeptidase isoform 2 
SLC26A5               0.011   prestin isoform b 
SLC26A5               0.011   prestin isoform a 
LMAN1L                0.008   lectin, mannose-binding, 1 like 
DMWD                  0.006   dystrophia myotonica-containing WD repeat motif prot...
SLFN12                0.006   schlafen family member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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