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Search of human proteins with 40805852
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40805852 thrombospondin type I domain-containing 1 isoform 2
[Homo sapiens]
(799 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40805852 thrombospondin type I domain-containing 1 isoform 2 ... 1622 0.0
gi|8923894 thrombospondin type I domain-containing 1 isoform 1 [... 1598 0.0
gi|18959210 WIRE protein [Homo sapiens] 41 0.004
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 40 0.011
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 37 0.094
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 36 0.16
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 36 0.16
gi|50083281 KIAA1853 protein [Homo sapiens] 35 0.21
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 35 0.21
gi|62420886 discoidin domain receptor family, member 2 precursor... 35 0.27
gi|62420884 discoidin domain receptor family, member 2 precursor... 35 0.27
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.27
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 35 0.36
gi|239735592 TRAF2 and NCK interacting kinase isoform 8 [Homo sa... 35 0.36
gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo sa... 35 0.36
gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo sa... 35 0.36
gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo sa... 35 0.36
gi|27436940 reelin isoform b [Homo sapiens] 34 0.47
gi|27436938 reelin isoform a [Homo sapiens] 34 0.47
gi|239755879 PREDICTED: hypothetical protein XP_002344729 [Homo ... 34 0.47
gi|239750409 PREDICTED: hypothetical protein XP_002347416 [Homo ... 34 0.47
gi|239744709 PREDICTED: hypothetical protein XP_002343201 [Homo ... 34 0.47
gi|194097448 RELT-like 2 [Homo sapiens] 33 0.80
gi|194097446 RELT-like 2 [Homo sapiens] 33 0.80
gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens] 33 0.80
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 33 1.0
gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform... 33 1.0
gi|217035133 hypothetical protein LOC55765 isoform 2 [Homo sapiens] 33 1.4
gi|217035131 hypothetical protein LOC55765 isoform 1 [Homo sapiens] 33 1.4
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 33 1.4
>gi|40805852 thrombospondin type I domain-containing 1 isoform 2
[Homo sapiens]
Length = 799
Score = 1622 bits (4201), Expect = 0.0
Identities = 799/799 (100%), Positives = 799/799 (100%)
Query: 1 MKPMLKDFSNLLLVVLCDYVLGEAEYLLLREPGHVALSNDTVYVDFQYFDGANGTLRNVS 60
MKPMLKDFSNLLLVVLCDYVLGEAEYLLLREPGHVALSNDTVYVDFQYFDGANGTLRNVS
Sbjct: 1 MKPMLKDFSNLLLVVLCDYVLGEAEYLLLREPGHVALSNDTVYVDFQYFDGANGTLRNVS 60
Query: 61 VLLLEANTNQTVTTKYLLTNQSQGTLKFECFYFKEAGDYWFTMTPEATDNSTPFPWWEKS 120
VLLLEANTNQTVTTKYLLTNQSQGTLKFECFYFKEAGDYWFTMTPEATDNSTPFPWWEKS
Sbjct: 61 VLLLEANTNQTVTTKYLLTNQSQGTLKFECFYFKEAGDYWFTMTPEATDNSTPFPWWEKS 120
Query: 121 AFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPLCPFPVDKPNIVVDVIFTNSLPEARR 180
AFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPLCPFPVDKPNIVVDVIFTNSLPEARR
Sbjct: 121 AFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPLCPFPVDKPNIVVDVIFTNSLPEARR 180
Query: 181 NSRQPLEIRTSKRTELAQGQWVEFGCAPLGPEAYVTVVLKLLGRDSVITSTGPIDLAQKF 240
NSRQPLEIRTSKRTELAQGQWVEFGCAPLGPEAYVTVVLKLLGRDSVITSTGPIDLAQKF
Sbjct: 181 NSRQPLEIRTSKRTELAQGQWVEFGCAPLGPEAYVTVVLKLLGRDSVITSTGPIDLAQKF 240
Query: 241 GYKLVMVPELTCESGVEVTVLPPPCTFVQGVVTVFKEAPRYPGKRTIHLAENSLPLGERR 300
GYKLVMVPELTCESGVEVTVLPPPCTFVQGVVTVFKEAPRYPGKRTIHLAENSLPLGERR
Sbjct: 241 GYKLVMVPELTCESGVEVTVLPPPCTFVQGVVTVFKEAPRYPGKRTIHLAENSLPLGERR 300
Query: 301 TIFNCTLFDMGKNKYCFDFGISSRSHFSAKEECMLIQRNTAFQPSSPSPLQPQGPVKSNN 360
TIFNCTLFDMGKNKYCFDFGISSRSHFSAKEECMLIQRNTAFQPSSPSPLQPQGPVKSNN
Sbjct: 301 TIFNCTLFDMGKNKYCFDFGISSRSHFSAKEECMLIQRNTAFQPSSPSPLQPQGPVKSNN 360
Query: 361 IVTVTGISLCLFIIIATVLITLWRRFGRPAKCSTPARHNSIHSPSFRKNSDEENICELSE 420
IVTVTGISLCLFIIIATVLITLWRRFGRPAKCSTPARHNSIHSPSFRKNSDEENICELSE
Sbjct: 361 IVTVTGISLCLFIIIATVLITLWRRFGRPAKCSTPARHNSIHSPSFRKNSDEENICELSE 420
Query: 421 QRGSFSDGGDGPTGSPGDTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLA 480
QRGSFSDGGDGPTGSPGDTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLA
Sbjct: 421 QRGSFSDGGDGPTGSPGDTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLA 480
Query: 481 QQQLKEMKKKGLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPE 540
QQQLKEMKKKGLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPE
Sbjct: 481 QQQLKEMKKKGLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPE 540
Query: 541 QPAVSAGERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRT 600
QPAVSAGERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRT
Sbjct: 541 QPAVSAGERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRT 600
Query: 601 ASFHEARQARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQ 660
ASFHEARQARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQ
Sbjct: 601 ASFHEARQARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQ 660
Query: 661 EASGTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRK 720
EASGTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRK
Sbjct: 661 EASGTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRK 720
Query: 721 QSSPISPKDNYQRVSSLSPSQCRKDKCQSFPTHPEFAFYDNTSFGLTEAEQRMLDLPGYF 780
QSSPISPKDNYQRVSSLSPSQCRKDKCQSFPTHPEFAFYDNTSFGLTEAEQRMLDLPGYF
Sbjct: 721 QSSPISPKDNYQRVSSLSPSQCRKDKCQSFPTHPEFAFYDNTSFGLTEAEQRMLDLPGYF 780
Query: 781 GSNEEDETTSTLSVEKLVI 799
GSNEEDETTSTLSVEKLVI
Sbjct: 781 GSNEEDETTSTLSVEKLVI 799
>gi|8923894 thrombospondin type I domain-containing 1 isoform 1
[Homo sapiens]
Length = 852
Score = 1598 bits (4137), Expect = 0.0
Identities = 799/852 (93%), Positives = 799/852 (93%), Gaps = 53/852 (6%)
Query: 1 MKPMLKDFSNLLLVVLCDYVLGEAEYLLLREPGHVALSNDTVYVDFQYFDGANGTLRNVS 60
MKPMLKDFSNLLLVVLCDYVLGEAEYLLLREPGHVALSNDTVYVDFQYFDGANGTLRNVS
Sbjct: 1 MKPMLKDFSNLLLVVLCDYVLGEAEYLLLREPGHVALSNDTVYVDFQYFDGANGTLRNVS 60
Query: 61 VLLLEANTNQTVTTKYLLTNQSQGTLKFECFYFKEAGDYWFTMTPEATDNSTPFPWWEKS 120
VLLLEANTNQTVTTKYLLTNQSQGTLKFECFYFKEAGDYWFTMTPEATDNSTPFPWWEKS
Sbjct: 61 VLLLEANTNQTVTTKYLLTNQSQGTLKFECFYFKEAGDYWFTMTPEATDNSTPFPWWEKS 120
Query: 121 AFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPLCPFPVDKPNIVVDVIFTNSLPEARR 180
AFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPLCPFPVDKPNIVVDVIFTNSLPEARR
Sbjct: 121 AFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPLCPFPVDKPNIVVDVIFTNSLPEARR 180
Query: 181 NSRQPLEIRTSKRTELAQGQWVEFGCAPLGPEAYVTVVLKLLGRDSVITSTGPIDLAQKF 240
NSRQPLEIRTSKRTELAQGQWVEFGCAPLGPEAYVTVVLKLLGRDSVITSTGPIDLAQKF
Sbjct: 181 NSRQPLEIRTSKRTELAQGQWVEFGCAPLGPEAYVTVVLKLLGRDSVITSTGPIDLAQKF 240
Query: 241 GYKLVMVPELTCESGVEVTVLPPPCTFVQGVVTVFKEAPRYPGKRTIHLAENSLPLGERR 300
GYKLVMVPELTCESGVEVTVLPPPCTFVQGVVTVFKEAPRYPGKRTIHLAENSLPLGERR
Sbjct: 241 GYKLVMVPELTCESGVEVTVLPPPCTFVQGVVTVFKEAPRYPGKRTIHLAENSLPLGERR 300
Query: 301 TIFNCTLFDMGKNKYCFDFGISSRSHFSAKEECMLIQRNT-------------------- 340
TIFNCTLFDMGKNKYCFDFGISSRSHFSAKEECMLIQRNT
Sbjct: 301 TIFNCTLFDMGKNKYCFDFGISSRSHFSAKEECMLIQRNTETWGLWQPWSQCSATCGDGV 360
Query: 341 ---------------------------------AFQPSSPSPLQPQGPVKSNNIVTVTGI 367
AFQPSSPSPLQPQGPVKSNNIVTVTGI
Sbjct: 361 RERRRVCLTSFPSSPVCPGMSLEASLCSLEECAAFQPSSPSPLQPQGPVKSNNIVTVTGI 420
Query: 368 SLCLFIIIATVLITLWRRFGRPAKCSTPARHNSIHSPSFRKNSDEENICELSEQRGSFSD 427
SLCLFIIIATVLITLWRRFGRPAKCSTPARHNSIHSPSFRKNSDEENICELSEQRGSFSD
Sbjct: 421 SLCLFIIIATVLITLWRRFGRPAKCSTPARHNSIHSPSFRKNSDEENICELSEQRGSFSD 480
Query: 428 GGDGPTGSPGDTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEM 487
GGDGPTGSPGDTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEM
Sbjct: 481 GGDGPTGSPGDTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEM 540
Query: 488 KKKGLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAG 547
KKKGLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAG
Sbjct: 541 KKKGLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAG 600
Query: 548 ERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRTASFHEAR 607
ERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRTASFHEAR
Sbjct: 601 ERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRTASFHEAR 660
Query: 608 QARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRG 667
QARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRG
Sbjct: 661 QARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRG 720
Query: 668 PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRKQSSPISP 727
PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRKQSSPISP
Sbjct: 721 PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRKQSSPISP 780
Query: 728 KDNYQRVSSLSPSQCRKDKCQSFPTHPEFAFYDNTSFGLTEAEQRMLDLPGYFGSNEEDE 787
KDNYQRVSSLSPSQCRKDKCQSFPTHPEFAFYDNTSFGLTEAEQRMLDLPGYFGSNEEDE
Sbjct: 781 KDNYQRVSSLSPSQCRKDKCQSFPTHPEFAFYDNTSFGLTEAEQRMLDLPGYFGSNEEDE 840
Query: 788 TTSTLSVEKLVI 799
TTSTLSVEKLVI
Sbjct: 841 TTSTLSVEKLVI 852
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 41.2 bits (95), Expect = 0.004
Identities = 57/235 (24%), Positives = 91/235 (38%), Gaps = 25/235 (10%)
Query: 427 DGGDGPTGSPGDTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKE 486
DG + G P IP + R + P PP ASG +++ + P R+ + L +
Sbjct: 102 DGSENLAGKPA-LQIPSS-RAAAPRPPVSAASGRPQDDTDSSRASLPELP-RMQRPSLPD 158
Query: 487 MKKKGLTETTKVYHVSQSPLTDTAIDAA--PSAPLDLESPEEAAANKFRIKSPFPEQ--- 541
+ + T +T + H S +P A P PL + S + A N+ + P P Q
Sbjct: 159 LSRPNTTSSTGMKHSSSAPPPPPPGRRANAPPTPLPMHSSKAPAYNREKPLPPTPGQRLH 218
Query: 542 ------PAVSAGERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNA 595
PA + PPS +++ + +++P R+ G GPS ++
Sbjct: 219 PGREGPPAPPPVKPPPSPVNIRTGPSGQSLAPPPPPYRQPP----GVPNGPSSPTNESAP 274
Query: 596 HF-RRTASFHEARQARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGA 649
+R S H + P R ++ P A R A D P SRGA
Sbjct: 275 ELPQRHNSLH---RKTPGPVRGLAPPPPTSASPSLLSNRPPPPARD---PPSRGA 323
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 39.7 bits (91), Expect = 0.011
Identities = 76/317 (23%), Positives = 113/317 (35%), Gaps = 38/317 (11%)
Query: 423 GSFSDGGDGPTGSPGDT--GIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLA 480
G GG PT +P +PL + + P A G N+Q + A
Sbjct: 133 GLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQSLA--------A 184
Query: 481 QQQLKEMKKKGLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPE 540
Q LK M T K+ HV+ ++ PS D S E A K R++
Sbjct: 185 DQLLKLMS----TVDPKLNHVAAGLVS-------PSLKSDTSSKEIEEAMK-RVREA--- 229
Query: 541 QPAVSAGERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRT 600
Q +SA P + + + S + S S+ S +RH SR RSH+++ RR+
Sbjct: 230 QSLISAAIEPDKKEEKR--RHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRS 287
Query: 601 ASFHEAR-QARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHF 659
S R +R RS ST R + + + R E+
Sbjct: 288 KSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRR- 346
Query: 660 QEASGTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSR 719
+ SGTR P P L R P H+ E+ + R +S S+
Sbjct: 347 RSRSGTRSPKKPRSPKRKLS---RSPSPRRHKK------EKKKDKDKERSRDERERSTSK 397
Query: 720 KQSSPISPKDNYQRVSS 736
K+ S KD ++ S
Sbjct: 398 KKKSKDKEKDRERKSES 414
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 36.6 bits (83), Expect = 0.094
Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 27/194 (13%)
Query: 566 SPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRTASFHEARQARPFRERSMSTLTPRQA 625
S +Q+ + H SR ERSH+ + + + R RS S +Q
Sbjct: 340 SQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQR 399
Query: 626 PAYSSRTRTCEQAEDRFRPQS------RGAHLFPEKLEHFQEASGTRGPLNPLPKSYTLG 679
SR+R+ +A DR R +S R P K ++ S +R P +S +
Sbjct: 400 D--HSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKA---RDCSRSRSPYKARDRSRS-- 452
Query: 680 QPLRKPDLG-DHQAGLVAGIERTEPHRAR---RGPSPSHKSVSRKQSSPISPKDNYQRVS 735
R P+ DH P++AR R SPS + + SP +D+ + S
Sbjct: 453 ---RSPNKARDHSRS-------RSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRS 502
Query: 736 SLSPSQCRKDKCQS 749
QCR+ + S
Sbjct: 503 PSKERQCRQSRSSS 516
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 35.8 bits (81), Expect = 0.16
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 31/185 (16%)
Query: 574 KSQARHVGSRGGPSERSHARNAHFRR------------TASFHEARQARPFRERSMSTLT 621
+ R G RGG SE S +R+ H ++S R++ S S+
Sbjct: 214 REHRRRDGQRGG-SEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRK 272
Query: 622 PRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRGPLNPL------PKS 675
R + A+ SRT++ ++ ++ + +K E +A R L+PL P S
Sbjct: 273 DRDSKAHRSRTKSSKEPPSAYKEPPKAYR--EDKTE--PKAYRRRRSLSPLGGRDDSPVS 328
Query: 676 YTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRKQSSPISPKDNYQRVS 735
+ Q LR G + R P R PSP SR++S S +Y+R
Sbjct: 329 HRASQSLRSRKSPSPAGGGSSPYSRRLP----RSPSP----YSRRRSPSYSRHSSYERGG 380
Query: 736 SLSPS 740
+SPS
Sbjct: 381 DVSPS 385
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 35.8 bits (81), Expect = 0.16
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 31/185 (16%)
Query: 574 KSQARHVGSRGGPSERSHARNAHFRR------------TASFHEARQARPFRERSMSTLT 621
+ R G RGG SE S +R+ H ++S R++ S S+
Sbjct: 214 REHRRRDGQRGG-SEASKSRSRHSHSGEERAEVAKSGSSSSSGGRRKSASATSSSSSSRK 272
Query: 622 PRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRGPLNPL------PKS 675
R + A+ SRT++ ++ ++ + +K E +A R L+PL P S
Sbjct: 273 DRDSKAHRSRTKSSKEPPSAYKEPPKAYR--EDKTE--PKAYRRRRSLSPLGGRDDSPVS 328
Query: 676 YTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRKQSSPISPKDNYQRVS 735
+ Q LR G + R P R PSP SR++S S +Y+R
Sbjct: 329 HRASQSLRSRKSPSPAGGGSSPYSRRLP----RSPSP----YSRRRSPSYSRHSSYERGG 380
Query: 736 SLSPS 740
+SPS
Sbjct: 381 DVSPS 385
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 35.4 bits (80), Expect = 0.21
Identities = 99/446 (22%), Positives = 152/446 (34%), Gaps = 79/446 (17%)
Query: 320 GISSRSHFSAKEECMLIQRNTAFQPSSP--SPLQPQGPVKSNNIVTVTGISLCLFIIIAT 377
G SR S + L + + Q S P PLQ G + + ++T +G + LF A+
Sbjct: 214 GQKSRRRHSRRCSKTLCKDSPEAQSSRPPSQPLQMLGYLSARGVITGSGSAADLFTKTAS 273
Query: 378 VLITLWRRF-----GRPAKCSTPARHNSIHSPSFRKNSDEENICELSE-QRGSFSDGGDG 431
L T R G + +S S K S + + E G+ SD G+
Sbjct: 274 PLTTSRGRSQEYDSGNDTSSPPSTQTSSARSRGQEKGSPSGGLSKSRELNSGNTSDSGNS 333
Query: 432 -PTGSPGDTGIPLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKK 490
T SP + G L + P S FQS P L + E+KK
Sbjct: 334 FTTSSPQNKGAMLEN-----LSPTSRGRESRGFQS------PCL--------ECAEVKKS 374
Query: 491 GLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESPEEAAANKF----------RIKSPFPE 540
L +T + ++ + S+ SP A+ ++ R S P
Sbjct: 375 SLVPSTARSSPMKGCSRSSSYASTRSSSHSSRSPNPRASPRYTQSRSTSSEKRSYSRSPS 434
Query: 541 QPAVSAGERPPSRLDLNVTQASCA-ISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRR 599
+ S PPSR + S + SPS R+ ++ ER AR RR
Sbjct: 435 YSSKSGKRSPPSRSSRSRRSPSYSRYSPS----RERDPKYSEKDSQQRERERAR----RR 486
Query: 600 TASFHEARQARP-----FRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPE 654
S+ R+ R R +++ R P Y R P S G+
Sbjct: 487 RRSYSPMRKRRRDSPSHLEARRITSARKRPIPYY------------RPSPSSSGSL---S 531
Query: 655 KLEHFQEASGTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSH 714
+ +S +R +S + + R+ RT + R PSP
Sbjct: 532 STSSWYSSSSSRSASRSYSRSRSRSRSRRRSRT------------RTSSSSSSRSPSPGS 579
Query: 715 KSVSRKQSSPISPKDNYQRVSSLSPS 740
+S SR +S S + R S + S
Sbjct: 580 RSRSRSRSRSRSRSRSQSRSYSSADS 605
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.4 bits (80), Expect = 0.21
Identities = 69/289 (23%), Positives = 98/289 (33%), Gaps = 39/289 (13%)
Query: 442 PLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHV 501
P RRS PV E S S S + + P + KE + + KV
Sbjct: 180 PSPRRRSSPVRRERKRSHSRSPRHRTKSRSPS------PAPEKKEKTPELPEPSVKVKEP 233
Query: 502 SQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQA 561
S T T+ P + P+E + K K E+ RP SR
Sbjct: 234 SVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKT------RPRSRSRSKSRSR 287
Query: 562 SCAISPSQTLIRK---SQARHVGSRGGPSERSHARNAHFRRTASFHEARQARPFRERSMS 618
+ + SPS T R+ S++R R PS R R + RRT R R RS
Sbjct: 288 TRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRR--RPSPRRRTPPRRMPPPPRHRRSRSPV 345
Query: 619 TLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRGPLNPLPKSYTL 678
R + + S + + + R P+ P K T P P+
Sbjct: 346 RRRRRSSASLSGSSSSSSSSRSRSPPKK------PPKR--------TSSP----PRKTRR 387
Query: 679 GQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRKQSSPISP 727
P P H+ A T P + R P+P + +RK +SP
Sbjct: 388 LSPSASPPRRRHRPSPPA----TPPPKTRHSPTPQQSNRTRKSRVSVSP 432
>gi|62420886 discoidin domain receptor family, member 2 precursor
[Homo sapiens]
Length = 855
Score = 35.0 bits (79), Expect = 0.27
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 344 PSSPSPLQPQGPVKSNNIVTVTGISLCL-FIIIATVLITLWRRFGRPAKCSTPARHNSIH 402
P +P+ P V +N + G + + FI++A ++I LWR+F + +
Sbjct: 381 PMAPTTYDPMLKVDDSNTRILIGCLVAIIFILLAIIVIILWRQFWQ-----------KML 429
Query: 403 SPSFRKNSDEENICELSEQRGSFSDGGDGPTGSPGDTGIPLTYRRSGPVPPE 454
+ R+ D+E LS S S + + SP + G TY R P+ P+
Sbjct: 430 EKASRRMLDDEMTVSLSLPSDS-SMFNNNRSSSPSEQGSNSTYDRIFPLRPD 480
>gi|62420884 discoidin domain receptor family, member 2 precursor
[Homo sapiens]
Length = 855
Score = 35.0 bits (79), Expect = 0.27
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 344 PSSPSPLQPQGPVKSNNIVTVTGISLCL-FIIIATVLITLWRRFGRPAKCSTPARHNSIH 402
P +P+ P V +N + G + + FI++A ++I LWR+F + +
Sbjct: 381 PMAPTTYDPMLKVDDSNTRILIGCLVAIIFILLAIIVIILWRQFWQ-----------KML 429
Query: 403 SPSFRKNSDEENICELSEQRGSFSDGGDGPTGSPGDTGIPLTYRRSGPVPPE 454
+ R+ D+E LS S S + + SP + G TY R P+ P+
Sbjct: 430 EKASRRMLDDEMTVSLSLPSDS-SMFNNNRSSSPSEQGSNSTYDRIFPLRPD 480
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.0 bits (79), Expect = 0.27
Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 32/226 (14%)
Query: 523 SPEEAAANKFRIKSPFPEQPAVSAGERPPSRL--DLNVTQASCAISPSQTLIR-KSQARH 579
S A + R +S P + S P R + T A S S+T R +S++R
Sbjct: 647 SRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 706
Query: 580 VGSRGGPSERSHARNAHFR-RTASFHEAR-QARPFRERSMSTLTPRQAPAYSSRTRTCEQ 637
+ RG RSH+R R R+ S E + ++R + RS S +P + S R+
Sbjct: 707 LVRRG----RSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSL 762
Query: 638 AEDRFRPQSRGAHLFPEKLEHFQEASGTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAG 697
+ R + +SR L + SG+ +P PK + P R+ G Q +
Sbjct: 763 SSPRSKAKSR--------LSLRRSLSGS----SPCPKQKSQTPP-RRSRSGSSQPKAKS- 808
Query: 698 IERTEPHRARRGPSP----SHKSVSRKQSSPISPKDNYQRVSSLSP 739
RT P R+R SP K+ SR+ S SP + +V S +P
Sbjct: 809 --RTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSP---HPKVKSGTP 849
Score = 33.9 bits (76), Expect = 0.61
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 18/185 (9%)
Query: 574 KSQARHVGSRGGPSERSHARNAHFR-RTASFHEARQARPFRERSMSTLTPRQAPAYS--- 629
+S +R +RG R+ AR R RT + +R P R RS S R+ + S
Sbjct: 561 RSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTP 620
Query: 630 ----SRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRGPL-NPLPKSYTLGQPLRK 684
SRTR+ + R R +R + + + S +R P +S T P R+
Sbjct: 621 ARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRT---PARR 677
Query: 685 PDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRKQSSPISPKDNYQRVSSLSPSQCRK 744
G ++ A R+ RRG S S V R +S +P QR S RK
Sbjct: 678 S--GRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTP----QRRGRSGSSSERK 731
Query: 745 DKCQS 749
+K ++
Sbjct: 732 NKSRT 736
Score = 32.7 bits (73), Expect = 1.4
Identities = 54/218 (24%), Positives = 79/218 (36%), Gaps = 25/218 (11%)
Query: 559 TQASCAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFR-RTASFHEARQARPFRERSM 617
T A S S+T R+ +R R+ AR R RT + +R P R RS
Sbjct: 577 TPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSR 636
Query: 618 STLTPRQA-------PAYSSRTRT---CEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRG 667
S R++ PA R+R+ + R R +R + + + S +R
Sbjct: 637 SRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRT 696
Query: 668 PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGI------ERTEPHRARRGPSPSHKS---VS 718
P +S +L + R + G RT R+R SP K S
Sbjct: 697 PRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISS 756
Query: 719 RKQSSPISPKDNYQ-----RVSSLSPSQCRKDKCQSFP 751
R+ S SP+ + R S S C K K Q+ P
Sbjct: 757 RRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPP 794
Score = 32.0 bits (71), Expect = 2.3
Identities = 86/395 (21%), Positives = 138/395 (34%), Gaps = 55/395 (13%)
Query: 391 KCSTPARHNSIHSPSFRKNSDEENICELSEQRGSFSDGGDGPTGSPGD------------ 438
KC TP R S S + + + GS + P+ SP +
Sbjct: 1508 KCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKA 1567
Query: 439 -TGIPLTYR-RSGPVP---------PEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEM 487
T PL R RSG P P SGS + + P S + + K
Sbjct: 1568 KTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAP 1627
Query: 488 KKKGLTETTKVYHVSQ----SPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPA 543
+ L ++ S+ SP ++ +++P P P+ A + SP P+ +
Sbjct: 1628 APRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHP-----PKSRTARRGSRSSPEPKTKS 1682
Query: 544 VSAGERPPSRLDLNVTQA--------SCAISPSQTLIRKSQARHVGSRGGPSERSHARNA 595
+ R SR +T+ S + SP + R S P +R++
Sbjct: 1683 RTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSS 1742
Query: 596 HFRRTASFHEARQARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEK 655
RR+AS + R RS S PR SR+R + R R +S + +
Sbjct: 1743 RRRRSASSPRTKTTSR-RGRSPSP-KPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRR 1800
Query: 656 LEHFQEASGT----RGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEP---HRARR 708
+ + S RG Y P R+ + + G RT P R+R
Sbjct: 1801 RQRSRSRSRVTRRRRGG-----SGYHSRSPARQ-ESSRTSSRRRRGRSRTPPTSRKRSRS 1854
Query: 709 GPSPSHKSVSRKQSSPISPKDNYQRVSSLSPSQCR 743
SP+ SR ++SP + + + R +S + R
Sbjct: 1855 RTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSR 1889
Score = 30.8 bits (68), Expect = 5.2
Identities = 49/213 (23%), Positives = 76/213 (35%), Gaps = 13/213 (6%)
Query: 526 EAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQASCAISPSQTLIRKSQARHVGSRGG 585
E+ + K + +SP P+ S ++ S +P +S + S
Sbjct: 221 ESESKKRKHRSPTPKSKRKSKDKK-------RKRSRSTTPAPKSRRAHRSTSADSASSSD 273
Query: 586 PSERSHARNAHFRRTASFHEARQARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQ 645
S RS +R+A + + R P R P P +S R +P
Sbjct: 274 TS-RSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPS 332
Query: 646 SRGAHLFPEKLEHFQEASGTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHR 705
S + +K + +E S TR +P S P P L + G + T +
Sbjct: 333 SP----YEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQ 388
Query: 706 ARRGPSPSHKSVSRKQSSPISPKDNYQRVSSLS 738
P PS S +R +S P SP+ Q SS S
Sbjct: 389 EPVNP-PSEASPTRDRSPPKSPEKLPQSSSSES 420
>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 34.7 bits (78), Expect = 0.36
Identities = 45/151 (29%), Positives = 59/151 (39%), Gaps = 25/151 (16%)
Query: 567 PSQTLIRKSQARHVGSRGGPSERSHARNAHFRRTASFH-------EARQARPFRERSMST 619
P +R +QAR RGG + A A R A + R AR R R+ +
Sbjct: 47 PGPGRVRAAQAR--ARRGGGARERPAEGARGPRAARGGARAGPDAQLRAARTHRARAQTP 104
Query: 620 LTPRQAP-AYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRGPLNPLPKSYTL 678
R+A A S R C Q+ P+S G FP+ H+Q P P
Sbjct: 105 QLRREAACAGSFFFRKCRQS-----PRSHGQP-FPQLRSHWQ------APRQGWPAQEGG 152
Query: 679 GQPLRKPDLGDHQAGLVAGIERTEPHRARRG 709
G R+P + A L G +RT P R RG
Sbjct: 153 G---RRPSRREEAAALAGGGKRTAPGRRGRG 180
>gi|239735592 TRAF2 and NCK interacting kinase isoform 8 [Homo
sapiens]
Length = 1268
Score = 34.7 bits (78), Expect = 0.36
Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 28/223 (12%)
Query: 442 PLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHV 501
PL + + G P E A E A K P + A Q + E KGL+ + +V
Sbjct: 488 PLYHYKEGMSPSEKPAWAKEIPHLVAVKSQGPALT---ASQSVHEQPTKGLSGFQEALNV 544
Query: 502 SQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQA 561
+ + + S P P KF S ++ + PP V Q
Sbjct: 545 TSHRVE---MPRQNSDPTSENPPLPTRIEKFDRSSWLRQEEDI-----PPK-----VPQR 591
Query: 562 SCAISPSQTLIRKSQARHVGSRGGP---SERSHARNAHFRRTASFHEARQARPFRERSMS 618
+ +ISP+ L RK+ + GS GP S+ A N RRT E+ R S S
Sbjct: 592 TTSISPA--LARKNSPGN-GSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSS 648
Query: 619 TLTPRQAPAY------SSRTRTCEQAEDRFRPQSRGAHLFPEK 655
+ TP P+ S+ + E+ R +S G+ + P +
Sbjct: 649 SSTPSSQPSSQGGSQPGSQAGSSERTRVRANSKSEGSPVLPHE 691
>gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo
sapiens]
Length = 1276
Score = 34.7 bits (78), Expect = 0.36
Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 28/223 (12%)
Query: 442 PLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHV 501
PL + + G P E A E A K P + A Q + E KGL+ + +V
Sbjct: 488 PLYHYKEGMSPSEKPAWAKEIPHLVAVKSQGPALT---ASQSVHEQPTKGLSGFQEALNV 544
Query: 502 SQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQA 561
+ + + S P P KF S ++ + PP V Q
Sbjct: 545 TSHRVE---MPRQNSDPTSENPPLPTRIEKFDRSSWLRQEEDI-----PPK-----VPQR 591
Query: 562 SCAISPSQTLIRKSQARHVGSRGGP---SERSHARNAHFRRTASFHEARQARPFRERSMS 618
+ +ISP+ L RK+ + GS GP S+ A N RRT E+ R S S
Sbjct: 592 TTSISPA--LARKNSPGN-GSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSS 648
Query: 619 TLTPRQAPAY------SSRTRTCEQAEDRFRPQSRGAHLFPEK 655
+ TP P+ S+ + E+ R +S G+ + P +
Sbjct: 649 SSTPSSQPSSQGGSQPGSQAGSSERTRVRANSKSEGSPVLPHE 691
>gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo
sapiens]
Length = 1297
Score = 34.7 bits (78), Expect = 0.36
Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 28/223 (12%)
Query: 442 PLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHV 501
PL + + G P E A E A K P + A Q + E KGL+ + +V
Sbjct: 517 PLYHYKEGMSPSEKPAWAKEIPHLVAVKSQGPALT---ASQSVHEQPTKGLSGFQEALNV 573
Query: 502 SQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQA 561
+ + + S P P KF S ++ + PP V Q
Sbjct: 574 TSHRVE---MPRQNSDPTSENPPLPTRIEKFDRSSWLRQEEDI-----PPK-----VPQR 620
Query: 562 SCAISPSQTLIRKSQARHVGSRGGP---SERSHARNAHFRRTASFHEARQARPFRERSMS 618
+ +ISP+ L RK+ + GS GP S+ A N RRT E+ R S S
Sbjct: 621 TTSISPA--LARKNSPGN-GSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSS 677
Query: 619 TLTPRQAPAY------SSRTRTCEQAEDRFRPQSRGAHLFPEK 655
+ TP P+ S+ + E+ R +S G+ + P +
Sbjct: 678 SSTPSSQPSSQGGSQPGSQAGSSERTRVRANSKSEGSPVLPHE 720
>gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo
sapiens]
Length = 1305
Score = 34.7 bits (78), Expect = 0.36
Identities = 56/223 (25%), Positives = 85/223 (38%), Gaps = 28/223 (12%)
Query: 442 PLTYRRSGPVPPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHV 501
PL + + G P E A E A K P + A Q + E KGL+ + +V
Sbjct: 517 PLYHYKEGMSPSEKPAWAKEIPHLVAVKSQGPALT---ASQSVHEQPTKGLSGFQEALNV 573
Query: 502 SQSPLTDTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQA 561
+ + + S P P KF S ++ + PP V Q
Sbjct: 574 TSHRVE---MPRQNSDPTSENPPLPTRIEKFDRSSWLRQEEDI-----PPK-----VPQR 620
Query: 562 SCAISPSQTLIRKSQARHVGSRGGP---SERSHARNAHFRRTASFHEARQARPFRERSMS 618
+ +ISP+ L RK+ + GS GP S+ A N RRT E+ R S S
Sbjct: 621 TTSISPA--LARKNSPGN-GSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSS 677
Query: 619 TLTPRQAPAY------SSRTRTCEQAEDRFRPQSRGAHLFPEK 655
+ TP P+ S+ + E+ R +S G+ + P +
Sbjct: 678 SSTPSSQPSSQGGSQPGSQAGSSERTRVRANSKSEGSPVLPHE 720
>gi|27436940 reelin isoform b [Homo sapiens]
Length = 3458
Score = 34.3 bits (77), Expect = 0.47
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 62 LLLEANTNQTVTTKYLLTNQSQGTLKFECFY--FKEAGDYWFTMTPEATDNSTPFPWWE- 118
L+ N NQ V +Y + L E FY + + G + P+A + +T F WW+
Sbjct: 2584 LITPNNRNQGVLLEYSVNGGITWNLLMEIFYDQYSKPGFVNILLPPDAKEIATRFRWWQP 2643
Query: 119 -KSAFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPL 155
+ +W + +V + S A + T + F+S P+
Sbjct: 2644 RHDGLDQNDWAIDNVLI--SGSADQRTVMLDTFSSAPV 2679
>gi|27436938 reelin isoform a [Homo sapiens]
Length = 3460
Score = 34.3 bits (77), Expect = 0.47
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 62 LLLEANTNQTVTTKYLLTNQSQGTLKFECFY--FKEAGDYWFTMTPEATDNSTPFPWWE- 118
L+ N NQ V +Y + L E FY + + G + P+A + +T F WW+
Sbjct: 2584 LITPNNRNQGVLLEYSVNGGITWNLLMEIFYDQYSKPGFVNILLPPDAKEIATRFRWWQP 2643
Query: 119 -KSAFLKVEWPVFHVDLNRSAKAAEGTFQVGLFTSQPL 155
+ +W + +V + S A + T + F+S P+
Sbjct: 2644 RHDGLDQNDWAIDNVLI--SGSADQRTVMLDTFSSAPV 2679
>gi|239755879 PREDICTED: hypothetical protein XP_002344729 [Homo
sapiens]
Length = 90
Score = 34.3 bits (77), Expect = 0.47
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 668 PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSH 714
P+ P S T +R P+L A L AG +R P R GPSP +
Sbjct: 34 PVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSPGN 80
>gi|239750409 PREDICTED: hypothetical protein XP_002347416 [Homo
sapiens]
Length = 90
Score = 34.3 bits (77), Expect = 0.47
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 668 PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSH 714
P+ P S T +R P+L A L AG +R P R GPSP +
Sbjct: 34 PVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSPGN 80
>gi|239744709 PREDICTED: hypothetical protein XP_002343201 [Homo
sapiens]
Length = 90
Score = 34.3 bits (77), Expect = 0.47
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 668 PLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSH 714
P+ P S T +R P+L A L AG +R P R GPSP +
Sbjct: 34 PVASRPLSRTRPSRIRSPELAARPAPLCAGADRRSPGRPPAGPSPGN 80
>gi|194097448 RELT-like 2 [Homo sapiens]
Length = 303
Score = 33.5 bits (75), Expect = 0.80
Identities = 65/279 (23%), Positives = 91/279 (32%), Gaps = 73/279 (26%)
Query: 452 PPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHVSQSPLTDTAI 511
PPEDD ++ ++I+ + + LKEM G +E +S T +
Sbjct: 61 PPEDDDMNEDT----VERIVRCIIQNEANAEALKEML--GDSEGEGTVQLSSVDATSSLQ 114
Query: 512 DAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQASCAISPSQTL 571
D APS V G P C+ S L
Sbjct: 115 DGAPS-----------------------HHHTVHLGSAAPC--------LHCSRSKRPPL 143
Query: 572 IRKSQARHVGSRGGPSERS-----HARNAHFRRTASFHEARQARPFRERSMSTLTPRQAP 626
+R+ +++ SR E + R H + HE R P +RS + Q P
Sbjct: 144 VRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGLHEHRDGSP-TDRSWGS-GGGQDP 201
Query: 627 -----AYSSRTRTCEQAEDRFRPQS----------------RGAHLFPEKLEHFQEAS-- 663
+ + + A +R P+ R + L P LE AS
Sbjct: 202 GGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPRASAE 261
Query: 664 -----GTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAG 697
G RGP LP GQP KPD DHQ L G
Sbjct: 262 PTLRAGGRGPSPGLPTQEANGQP-SKPDTSDHQVSLPQG 299
>gi|194097446 RELT-like 2 [Homo sapiens]
Length = 303
Score = 33.5 bits (75), Expect = 0.80
Identities = 65/279 (23%), Positives = 91/279 (32%), Gaps = 73/279 (26%)
Query: 452 PPEDDASGSESFQSNAQKIIPPLFSYRLAQQQLKEMKKKGLTETTKVYHVSQSPLTDTAI 511
PPEDD ++ ++I+ + + LKEM G +E +S T +
Sbjct: 61 PPEDDDMNEDT----VERIVRCIIQNEANAEALKEML--GDSEGEGTVQLSSVDATSSLQ 114
Query: 512 DAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQASCAISPSQTL 571
D APS V G P C+ S L
Sbjct: 115 DGAPS-----------------------HHHTVHLGSAAPC--------LHCSRSKRPPL 143
Query: 572 IRKSQARHVGSRGGPSERS-----HARNAHFRRTASFHEARQARPFRERSMSTLTPRQAP 626
+R+ +++ SR E + R H + HE R P +RS + Q P
Sbjct: 144 VRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGLHEHRDGSP-TDRSWGS-GGGQDP 201
Query: 627 -----AYSSRTRTCEQAEDRFRPQS----------------RGAHLFPEKLEHFQEAS-- 663
+ + + A +R P+ R + L P LE AS
Sbjct: 202 GGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPRASAE 261
Query: 664 -----GTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAG 697
G RGP LP GQP KPD DHQ L G
Sbjct: 262 PTLRAGGRGPSPGLPTQEANGQP-SKPDTSDHQVSLPQG 299
>gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens]
Length = 970
Score = 33.5 bits (75), Expect = 0.80
Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 48/277 (17%)
Query: 412 EENICELSEQRGSFSDGGDGPTGSPGDTGIPL-TYRRSGPVPPEDDASGSESFQSNAQKI 470
E++ CE SEQ+ +PL T+R+ E +E + +K+
Sbjct: 470 EQDRCEASEQKQK----------------VPLGTFRKDMKTQEEKQKQLTEKIRQQQEKL 513
Query: 471 ------IPPLFSYRLAQQQLKEMKKKGLTETTKVYHVSQSPLTDTAIDAAPSAPLDLESP 524
P L + L+ + E + +SP I APS P L +P
Sbjct: 514 EALQKTTPIRSQADLKKLPLEVTTRPSTEEPVRRPQRPRSPPLPAVIRNAPSRPPSLPTP 573
Query: 525 EEAAA-NKFRIKSPFPEQPAVSAGERPPSRLDLNVTQASCAISPSQTLIRK-SQARHVGS 582
A+ K + S P+ PA++A E + L +A P+ TL++ S+ +
Sbjct: 574 RPASQPRKAPVISSTPKLPALAAREEASTSRLLQPPEAPR--KPANTLVKTASRPAPLVQ 631
Query: 583 RGGPSERSHARNAH------------FRRTASFHEARQARPFRERSMSTLTPRQAPAYSS 630
+ PS ++++ ++T S + A P R+RS+ A S
Sbjct: 632 QLSPSLLPNSKSPREVPSPKVIKTPVVKKTESPIKLSPATPSRKRSV---------AVSD 682
Query: 631 RTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRG 667
E+AE R RG + E+ + E S + G
Sbjct: 683 EEEVEEEAERRKERCKRGRFVVKEEKKDSNELSDSAG 719
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 33.1 bits (74), Expect = 1.0
Identities = 49/176 (27%), Positives = 64/176 (36%), Gaps = 31/176 (17%)
Query: 505 PLT--DTAIDAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQAS 562
PLT + + AP AP A + R P + SAG+RP + A+
Sbjct: 89 PLTFREASPGPAPGAP-------RARGSCGREPGPRRRRAPSSAGKRPAA--------AA 133
Query: 563 CAISPSQTLIRKSQARHVGSRGGPSERSHARNAHFRRTASFHEAR----QARPFRERSMS 618
A P Q + + R VGS PS H RR H R + P + R S
Sbjct: 134 RAAPPRQRSLARCLPRSVGSCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGS 193
Query: 619 TLTPR--------QAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTR 666
PR +AP+ S R C + +R P G L P L E G R
Sbjct: 194 ASPPRLAAPLAGSRAPSLSPFPRRCRRRAER-SPAGHGLPL-PRSLSRGGEVVGAR 247
>gi|69354671 ATP-binding cassette, sub-family F, member 1 isoform a
[Homo sapiens]
Length = 845
Score = 33.1 bits (74), Expect = 1.0
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 604 HEARQARPFRERSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEAS 663
H + A+P + R ++ Q PA + E+++ + +PQ++ A L E+ + +E
Sbjct: 149 HPPKPAKPEKNRINKAVSEEQQPALKGKKGKEEKSKGKAKPQNKFAALDNEEEDKEEEII 208
Query: 664 GTRGPLNPLPKSYTLGQPLRKPDLGDHQAGLVAGIERTEPHRARRGPSPSHKSVSRKQSS 723
+ P PK + +K + G + G G E E + P + +S+K+
Sbjct: 209 KEKEP----PKQGK--EKAKKAEQGSEEEG--EGEEEEEEGGESKADDP-YAHLSKKEKK 259
Query: 724 PISPKDNYQR-VSSLSPSQCRKD 745
+ + Y+R V+SL + ++
Sbjct: 260 KLKKQMEYERQVASLKAANAAEN 282
>gi|217035133 hypothetical protein LOC55765 isoform 2 [Homo sapiens]
Length = 578
Score = 32.7 bits (73), Expect = 1.4
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 30/123 (24%)
Query: 512 DAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQASCAISPSQTL 571
D++ S L LE E ++ P PE PA PPSR P QTL
Sbjct: 180 DSSLSDGLLLEEEES------QVPKPPPESPA------PPSR-----------PLPPQTL 216
Query: 572 IRKSQARHVGSRGGPSERSHARNAHFRRTASFHEARQAR----PFRERSMSTLTPRQAPA 627
+ G G ER+ +N+ ++ T+ H + R P+ E S TP+ P+
Sbjct: 217 ---EGLQPTGPEAGSPERAPVQNSPWKETSLDHPYEKPRKSSEPWSESSSPATTPQDGPS 273
Query: 628 YSS 630
SS
Sbjct: 274 ASS 276
>gi|217035131 hypothetical protein LOC55765 isoform 1 [Homo sapiens]
Length = 663
Score = 32.7 bits (73), Expect = 1.4
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 30/123 (24%)
Query: 512 DAAPSAPLDLESPEEAAANKFRIKSPFPEQPAVSAGERPPSRLDLNVTQASCAISPSQTL 571
D++ S L LE E ++ P PE PA PPSR P QTL
Sbjct: 265 DSSLSDGLLLEEEES------QVPKPPPESPA------PPSR-----------PLPPQTL 301
Query: 572 IRKSQARHVGSRGGPSERSHARNAHFRRTASFHEARQAR----PFRERSMSTLTPRQAPA 627
+ G G ER+ +N+ ++ T+ H + R P+ E S TP+ P+
Sbjct: 302 ---EGLQPTGPEAGSPERAPVQNSPWKETSLDHPYEKPRKSSEPWSESSSPATTPQDGPS 358
Query: 628 YSS 630
SS
Sbjct: 359 ASS 361
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 32.7 bits (73), Expect = 1.4
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 615 RSMSTLTPRQAPAYSSRTRTCEQAEDRFRPQSRGAHLFPEKLEHFQEASGTRGPLNPLPK 674
R + R+ P +R R+ EQ+ R RP++ G + EASG RG P+
Sbjct: 368 RGLPGRAARRKPPPLTRGRSVEQSPPRERPRAAG------RRGRMAEASGRRGS----PR 417
Query: 675 SYTLGQPLRKPDLGDHQAGLVAG------IERTEPH--RARRGPSPS 713
+ + + L + + +G ER EP R RRGP+P+
Sbjct: 418 ARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRPPRPRRGPAPT 464
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,508,861
Number of Sequences: 37866
Number of extensions: 1784062
Number of successful extensions: 8009
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 7889
Number of HSP's gapped (non-prelim): 195
length of query: 799
length of database: 18,247,518
effective HSP length: 110
effective length of query: 689
effective length of database: 14,082,258
effective search space: 9702675762
effective search space used: 9702675762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.