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Search of human proteins with 40288290
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40288290 chloride intracellular channel 3 [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40288290 chloride intracellular channel 3 [Homo sapiens] 477 e-135
gi|66346733 chloride intracellular channel 2 [Homo sapiens] 233 1e-61
gi|7330335 chloride intracellular channel 4 [Homo sapiens] 230 9e-61
gi|82617632 chloride intracellular channel 5 isoform b [Homo sap... 229 1e-60
gi|14251209 chloride intracellular channel 1 [Homo sapiens] 229 2e-60
gi|166197662 chloride intracellular channel 5 isoform a [Homo sa... 228 3e-60
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 226 1e-59
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 30 1.4
gi|40804468 calcium channel, voltage-dependent, beta 1 subunit i... 30 2.4
gi|40804472 calcium channel, voltage-dependent, beta 1 subunit i... 30 2.4
gi|40804470 calcium channel, voltage-dependent, beta 1 subunit i... 30 2.4
gi|22202624 glutathione transferase zeta 1 isoform 1 [Homo sapiens] 29 4.0
gi|156139122 CXXC finger 6 [Homo sapiens] 28 5.3
gi|16306479 testis specific, 14 [Homo sapiens] 28 6.9
gi|147904948 calcium channel, voltage-dependent, beta 2 subunit ... 28 9.0
gi|45359834 calcium channel, voltage-dependent, beta 2 subunit i... 28 9.0
gi|148223541 calcium channel, voltage-dependent, beta 2 subunit ... 28 9.0
gi|147901383 calcium channel, voltage-dependent, beta 2 subunit ... 28 9.0
gi|45359842 calcium channel, voltage-dependent, beta 2 subunit i... 28 9.0
gi|148226485 calcium channel, voltage-dependent, beta 2 subunit ... 28 9.0
gi|147898681 calcium channel, voltage-dependent, beta 2 subunit ... 28 9.0
gi|148232726 calcium channel, voltage-dependent, beta 2 subunit ... 28 9.0
>gi|40288290 chloride intracellular channel 3 [Homo sapiens]
Length = 236
Score = 477 bits (1227), Expect = e-135
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MAETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGS 60
MAETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGS
Sbjct: 1 MAETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGS 60
Query: 61 QLPILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPV 120
QLPILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPV
Sbjct: 61 QLPILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPV 120
Query: 121 PAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKL 180
PAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKL
Sbjct: 121 PAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKL 180
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHPR 236
HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHPR
Sbjct: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHPR 236
>gi|66346733 chloride intracellular channel 2 [Homo sapiens]
Length = 247
Score = 233 bits (594), Expect = 1e-61
Identities = 119/231 (51%), Positives = 156/231 (67%), Gaps = 6/231 (2%)
Query: 3 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQL 62
+ +++LFVKA DGES+G+CP CQRLFM+L LKGV F +TTVD R P+ LKD APG+
Sbjct: 11 DPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNP 70
Query: 63 PILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPA 122
P L+Y+ + KTD ++IE+FLE+TL PP +P L+P+Y+ES G ++F KFSA+IKN
Sbjct: 71 PFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESFDVGCNLFAKFSAYIKNTQKE 130
Query: 123 QDEALYQQLLRALARLDSYLRAPLEHEL----AGEPQLRESRRRFLDGDRLTLADCSLLP 178
++ + LL+ RLD YL PL E+ A EP + SRR FLDGD+LTLADCSLLP
Sbjct: 131 ANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPV--SRRLFLDGDQLTLADCSLLP 188
Query: 179 KLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAY 229
KL+I+ +R IPAE GV RYL +A +EF +TCP EI Y
Sbjct: 189 KLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEIENTY 239
>gi|7330335 chloride intracellular channel 4 [Homo sapiens]
Length = 253
Score = 230 bits (586), Expect = 9e-61
Identities = 116/229 (50%), Positives = 156/229 (68%), Gaps = 2/229 (0%)
Query: 3 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQL 62
E ++LFVKA DGES+G+CP QRLFM+L LKGV F++TTVD +R P L++ APG+
Sbjct: 16 EPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHP 75
Query: 63 PILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPA 122
P + ++S+ KTD +IE+FLEE L PP + L+P++ ESNTAG D+F KFSA+IKN P
Sbjct: 76 PFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPE 135
Query: 123 QDEALYQQLLRALARLDSYLRAPLEHEL--AGEPQLRESRRRFLDGDRLTLADCSLLPKL 180
+EAL + LL+ L +LD YL +PL E+ ++ S R+FLDG+ +TLADC+LLPKL
Sbjct: 136 ANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKL 195
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAY 229
HIV V +R IP E+ G+ RYL +A EF TCP E+ AY
Sbjct: 196 HIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIAY 244
>gi|82617632 chloride intracellular channel 5 isoform b [Homo
sapiens]
Length = 251
Score = 229 bits (585), Expect = 1e-60
Identities = 119/229 (51%), Positives = 154/229 (67%), Gaps = 2/229 (0%)
Query: 3 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQL 62
+ +++LFVKA DGES+G+CP QRLFM+L LKGV F +TTVD +R P L + APG+
Sbjct: 13 DPEIELFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHP 72
Query: 63 PILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPA 122
P L ++ D KTD +IE+FLEETL P +P LA ++RESNTAG D+F KFSA+IKN
Sbjct: 73 PFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHRESNTAGIDIFSKFSAYIKNTKQQ 132
Query: 123 QDEALYQQLLRALARLDSYLRAPLEHELAGEP--QLRESRRRFLDGDRLTLADCSLLPKL 180
+ AL + L +AL +LD YL PL E+ + + SRR+FLDGD LTLADC+LLPKL
Sbjct: 133 NNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNLLPKL 192
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAY 229
H+V V +R IPAE+ G+ RYL +A EF TC +EI AY
Sbjct: 193 HVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAY 241
>gi|14251209 chloride intracellular channel 1 [Homo sapiens]
Length = 241
Score = 229 bits (584), Expect = 2e-60
Identities = 121/229 (52%), Positives = 153/229 (66%), Gaps = 2/229 (0%)
Query: 3 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQL 62
+ +++LFVKA DG +G+CP QRLFMVL LKGV F +TTVDT+R + ++ PG QL
Sbjct: 5 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQL 64
Query: 63 PILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPA 122
P LLY ++ TDT +IE+FLE L PP +P LA ESNTAG D+F KFSA+IKN PA
Sbjct: 65 PFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPA 124
Query: 123 QDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRE--SRRRFLDGDRLTLADCSLLPKL 180
++ L + LL+AL LD+YL +PL E+ E S+R+FLDG+ LTLADC+LLPKL
Sbjct: 125 LNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKL 184
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAY 229
HIV VC +R IP RGV RYL +A +EF TCP EI AY
Sbjct: 185 HIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDDEEIELAY 233
>gi|166197662 chloride intracellular channel 5 isoform a [Homo
sapiens]
Length = 410
Score = 228 bits (581), Expect = 3e-60
Identities = 119/227 (52%), Positives = 152/227 (66%), Gaps = 2/227 (0%)
Query: 5 KLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPI 64
++ LFVKA DGES+G+CP QRLFM+L LKGV F +TTVD +R P L + APG+ P
Sbjct: 174 EIYLFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPF 233
Query: 65 LLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQD 124
L ++ D KTD +IE+FLEETL P +P LA ++RESNTAG D+F KFSA+IKN +
Sbjct: 234 LTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHRESNTAGIDIFSKFSAYIKNTKQQNN 293
Query: 125 EALYQQLLRALARLDSYLRAPLEHELAGEP--QLRESRRRFLDGDRLTLADCSLLPKLHI 182
AL + L +AL +LD YL PL E+ + + SRR+FLDGD LTLADC+LLPKLH+
Sbjct: 294 AALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNLLPKLHV 353
Query: 183 VDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAY 229
V V +R IPAE+ G+ RYL +A EF TC +EI AY
Sbjct: 354 VKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCAADSEIELAY 400
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 226 bits (576), Expect = 1e-59
Identities = 117/229 (51%), Positives = 152/229 (66%), Gaps = 2/229 (0%)
Query: 3 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQL 62
E + LFVKA DGES+G+CP QRLFM+L LKGV F +TTVD +R P L++ APG+
Sbjct: 450 EHDITLFVKAGYDGESIGNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNP 509
Query: 63 PILLYDSDAKTDTLQIEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPA 122
P + +D + KTD +IE+FLEE L PP +P L ++ ESN+AGNDVF KFSAFIKN
Sbjct: 510 PFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKD 569
Query: 123 QDEALYQQLLRALARLDSYLRAPLEHEL--AGEPQLRESRRRFLDGDRLTLADCSLLPKL 180
+E + LL+AL +LD+YL +PL E+ + S R+FLDGD LTLADC+LLPKL
Sbjct: 570 ANEIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPKL 629
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAY 229
HI+ V +R P+E+ G+ RYL++A EF TCP EI AY
Sbjct: 630 HIIKIVAKKYRDFEFPSEMTGIWRYLNNAYARDEFTNTCPADQEIEHAY 678
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 30.4 bits (67), Expect = 1.4
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 89 PDFPSLAPRYRESNTAGNDVF-HKFSAFIKNP---------VPAQDEAL-YQQLLRALAR 137
PD PS AP E G+ H+ S+ +P +P L Q+L L+
Sbjct: 437 PDSPSPAPSLEEGRRPGSHPSSHRSSSVSSSPARTESSSDRIPVHQNGLSMNQMLMGLS- 495
Query: 138 LDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLA 172
+ L P E +LAG ES+R ++ D L+
Sbjct: 496 -PNVLPGPKEGDLAGHDMGHESKRMHIEKDETPLS 529
>gi|40804468 calcium channel, voltage-dependent, beta 1 subunit
isoform 1 [Homo sapiens]
Length = 598
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P E+ D + E + + C H AE L AY A HP
Sbjct: 366 HLNVQIAASEKLAQCPPEM------FDIILDENQLEDACEHLAEYLEAYWKATHP 414
>gi|40804472 calcium channel, voltage-dependent, beta 1 subunit
isoform 3 [Homo sapiens]
Length = 478
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P E+ D + E + + C H AE L AY A HP
Sbjct: 366 HLNVQIAASEKLAQCPPEM------FDIILDENQLEDACEHLAEYLEAYWKATHP 414
>gi|40804470 calcium channel, voltage-dependent, beta 1 subunit
isoform 2 [Homo sapiens]
Length = 523
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P E+ D + E + + C H AE L AY A HP
Sbjct: 411 HLNVQIAASEKLAQCPPEM------FDIILDENQLEDACEHLAEYLEAYWKATHP 459
>gi|22202624 glutathione transferase zeta 1 isoform 1 [Homo sapiens]
Length = 216
Score = 28.9 bits (63), Expect = 4.0
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 13/163 (7%)
Query: 24 SCQ-RLFMVLLLKGVPFTLTTVDTRRS--PDVLKDFA---PGSQLPILLYDSDAKTDTLQ 77
SC R+ + L LKG+ + ++ + KDF P Q+P L D +L
Sbjct: 15 SCSWRVRIALALKGIDYETVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLA 74
Query: 78 IEDFLEETLGPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALAR 137
I ++LEE P P+ R S +D+ ++N + QL A
Sbjct: 75 IIEYLEEMRPTPRLLPQDPKKRASVRMISDLIAGGIQPLQNLSVLKQVGEEMQLTWAQNA 134
Query: 138 LDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKL 180
+ A E L+ + + GD +T+AD L+P++
Sbjct: 135 ITCGFNAL-------EQILQSTAGIYCVGDEVTMADLCLVPQV 170
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 28.5 bits (62), Expect = 5.3
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 142 LRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIP 196
L PLE GE E TL D S PK+ DTVCA F Q P
Sbjct: 214 LPGPLEGTRCGEGLFSEE----------TLNDTSGSPKMFAQDTVCAPFPQRATP 258
>gi|16306479 testis specific, 14 [Homo sapiens]
Length = 373
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 74 DTLQIEDFLEETLGPPDFPSLAPRYRESNTAGND 107
D +IE +LEE GP D PS R ++N++G +
Sbjct: 306 DLKKIEYYLEEEQGPADHPS---RLNQANSSGRE 336
>gi|147904948 calcium channel, voltage-dependent, beta 2 subunit
isoform 8 [Homo sapiens]
Length = 608
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P EL D + E + + C H A+ L AY A HP
Sbjct: 366 HLNVQMVAADKLAQCPPEL------FDVILDENQLEDACEHLADYLEAYWKATHP 414
>gi|45359834 calcium channel, voltage-dependent, beta 2 subunit
isoform 7 [Homo sapiens]
Length = 612
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P EL D + E + + C H A+ L AY A HP
Sbjct: 370 HLNVQMVAADKLAQCPPEL------FDVILDENQLEDACEHLADYLEAYWKATHP 418
>gi|148223541 calcium channel, voltage-dependent, beta 2 subunit
isoform 6 [Homo sapiens]
Length = 632
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P EL D + E + + C H A+ L AY A HP
Sbjct: 390 HLNVQMVAADKLAQCPPEL------FDVILDENQLEDACEHLADYLEAYWKATHP 438
>gi|147901383 calcium channel, voltage-dependent, beta 2 subunit
isoform 5 [Homo sapiens]
Length = 622
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P EL D + E + + C H A+ L AY A HP
Sbjct: 380 HLNVQMVAADKLAQCPPEL------FDVILDENQLEDACEHLADYLEAYWKATHP 428
>gi|45359842 calcium channel, voltage-dependent, beta 2 subunit
isoform 4 [Homo sapiens]
Length = 636
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P EL D + E + + C H A+ L AY A HP
Sbjct: 394 HLNVQMVAADKLAQCPPEL------FDVILDENQLEDACEHLADYLEAYWKATHP 442
>gi|148226485 calcium channel, voltage-dependent, beta 2 subunit
isoform 3 [Homo sapiens]
Length = 606
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P EL D + E + + C H A+ L AY A HP
Sbjct: 364 HLNVQMVAADKLAQCPPEL------FDVILDENQLEDACEHLADYLEAYWKATHP 412
>gi|147898681 calcium channel, voltage-dependent, beta 2 subunit
isoform 2 [Homo sapiens]
Length = 660
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P EL D + E + + C H A+ L AY A HP
Sbjct: 418 HLNVQMVAADKLAQCPPEL------FDVILDENQLEDACEHLADYLEAYWKATHP 466
>gi|148232726 calcium channel, voltage-dependent, beta 2 subunit
isoform 1 [Homo sapiens]
Length = 605
Score = 27.7 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 181 HIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVHP 235
H+ + A + A P EL D + E + + C H A+ L AY A HP
Sbjct: 363 HLNVQMVAADKLAQCPPEL------FDVILDENQLEDACEHLADYLEAYWKATHP 411
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,470,143
Number of Sequences: 37866
Number of extensions: 438855
Number of successful extensions: 914
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 23
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.