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Search of human proteins with 40288199
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40288199 hypothetical protein LOC219287 isoform 2 [Homo
sapiens]
(552 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40288199 hypothetical protein LOC219287 isoform 2 [Homo sapiens] 1121 0.0
gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens] 757 0.0
gi|124244056 family with sequence similarity 123B [Homo sapiens] 105 1e-22
gi|157427665 hypothetical protein LOC205147 [Homo sapiens] 84 3e-16
gi|157427663 hypothetical protein LOC205147 [Homo sapiens] 84 3e-16
gi|157427661 hypothetical protein LOC205147 [Homo sapiens] 84 3e-16
gi|157427667 hypothetical protein LOC205147 [Homo sapiens] 84 3e-16
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 48 3e-05
gi|150170670 piccolo isoform 2 [Homo sapiens] 46 8e-05
gi|150378539 piccolo isoform 1 [Homo sapiens] 46 8e-05
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-04
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 46 1e-04
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 45 1e-04
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 45 2e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 4e-04
gi|84570137 homeobox B3 [Homo sapiens] 43 7e-04
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 42 0.002
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 41 0.002
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 41 0.002
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens] 41 0.003
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 41 0.003
gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo ... 41 0.003
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 41 0.003
gi|239741624 PREDICTED: hypothetical protein XP_002342251 [Homo ... 41 0.003
gi|55956910 meningioma 1 [Homo sapiens] 40 0.004
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 40 0.006
>gi|40288199 hypothetical protein LOC219287 isoform 2 [Homo sapiens]
Length = 552
Score = 1121 bits (2900), Expect = 0.0
Identities = 552/552 (100%), Positives = 552/552 (100%)
Query: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS
Sbjct: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
Query: 61 GKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRK 120
GKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRK
Sbjct: 61 GKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRK 120
Query: 121 EEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEP 180
EEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEP
Sbjct: 121 EEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEP 180
Query: 181 VDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE 240
VDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE
Sbjct: 181 VDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE 240
Query: 241 TPRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQ 300
TPRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQ
Sbjct: 241 TPRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQ 300
Query: 301 GGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCV 360
GGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCV
Sbjct: 301 GGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCV 360
Query: 361 EAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSS 420
EAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSS
Sbjct: 361 EAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSS 420
Query: 421 GKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTP 480
GKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTP
Sbjct: 421 GKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTP 480
Query: 481 GSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVSNRGLAGTTI 540
GSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVSNRGLAGTTI
Sbjct: 481 GSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVSNRGLAGTTI 540
Query: 541 RATACHDSAKKL 552
RATACHDSAKKL
Sbjct: 541 RATACHDSAKKL 552
>gi|40288203 hypothetical protein LOC219287 isoform 1 [Homo sapiens]
Length = 671
Score = 757 bits (1954), Expect = 0.0
Identities = 429/681 (62%), Positives = 453/681 (66%), Gaps = 139/681 (20%)
Query: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS
Sbjct: 1 METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPS 60
Query: 61 GKINKAAFKLFKKRKSGGTMPSIFGVK--------------------------------- 87
GKINKAAFKLFKKRKSGGTMPSIFGVK
Sbjct: 61 GKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRK 120
Query: 88 -----------------NKGDGKSSGPTG--LVRS---RTHDGLAEVLVLESGRKEEPRG 125
N G +++GP G L S ++H + L+ ++GR E +G
Sbjct: 121 EEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFS--LLKKNGRSENGKG 178
Query: 126 GGDSGGGGGGRPNPG--------------------PPRAAGPGGGSLASSSVAKSHSFFS 165
GG+ G PGGG + S+ S
Sbjct: 179 EPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTAS---LE 235
Query: 166 LLKKN--------------------GRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHR 205
+K+ G G+ P A +A + R GL H
Sbjct: 236 CVKEETPRAAREPEEPSQDAPRDPAGEPAGGEEVPAPADRAPARSCREAEGLA-----HP 290
Query: 206 KDKRAKAEAAEGRA---PGGGLILPGSLTASLECVKEETP----------RAAREPEEPS 252
D A+ E A G PG G + + V +T RA P+ S
Sbjct: 291 GDTGARGEDAAGHRRAEPGPGEVRTAEDASRTGAVPVKTVPLVDSEGGSGRAPAAPDPAS 350
Query: 253 QDAPRDPA---------------------GCGDIIADQEEEAGPSCDKHVPGPGKPALSK 291
D P DP+ GCGDIIADQEEEAGPSCDKHVPGPGKPALSK
Sbjct: 351 VDPPSDPSADRICLMFSDVTSLKSFDSLTGCGDIIADQEEEAGPSCDKHVPGPGKPALSK 410
Query: 292 KNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVP 351
KNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVP
Sbjct: 411 KNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVP 470
Query: 352 ETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTP 411
ETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTP
Sbjct: 471 ETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTP 530
Query: 412 GPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPG 471
GPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPG
Sbjct: 531 GPEEDSSSSGKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPG 590
Query: 472 TITCPLRTPGSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVS 531
TITCPLRTPGSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVS
Sbjct: 591 TITCPLRTPGSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVS 650
Query: 532 NRGLAGTTIRATACHDSAKKL 552
NRGLAGTTIRATACHDSAKKL
Sbjct: 651 NRGLAGTTIRATACHDSAKKL 671
>gi|124244056 family with sequence similarity 123B [Homo sapiens]
Length = 1135
Score = 105 bits (261), Expect = 1e-22
Identities = 76/208 (36%), Positives = 109/208 (52%), Gaps = 24/208 (11%)
Query: 261 GCGDIIADQEEEAGPSCDKHVPGPGKPAL---SKKNPGVVAYQGGGEEMASPDEVDDTYL 317
GCGDIIA+Q+ + S + G+ A +K++ +V YQGGGEEMA PD+ D+
Sbjct: 327 GCGDIIAEQDMD---SMTDSMASGGQRANRDGTKRSSCLVTYQGGGEEMALPDDDDEEEE 383
Query: 318 QEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPET----PKDTRCVEAAKDASSVKRRR 373
+E L + EE+ E +E + + + ET P+ + S
Sbjct: 384 EEEEVELEEEEEEVKEEEEDD-------DLEYLWETAQMYPRPNMNLGYHPTTSPGHHGY 436
Query: 374 LNRIPIEPHPKEEPKH---PEKEQQEGVPNSDEGYWDSTTPGPEEDSSSS---GKKAGIP 427
+ P+ +P P P+ +QQE PNSDEGY+DSTTPG E+DS + ++ +P
Sbjct: 437 MLLDPVRSYPGLAPGELLTPQSDQQESAPNSDEGYYDSTTPGFEDDSGEALGLVRRDCLP 496
Query: 428 RDSYSGDALYDLYADPDGSPATLPGGKD 455
RDSYSGDALY+ Y +PD S P G D
Sbjct: 497 RDSYSGDALYEFY-EPDDSLENSPPGDD 523
>gi|157427665 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 84.3 bits (207), Expect = 3e-16
Identities = 69/205 (33%), Positives = 96/205 (46%), Gaps = 38/205 (18%)
Query: 261 GCGDIIADQEEEAGPSCDKHVPGPGKPA-----LSKKNPGVVAYQGGGEEMASPDEVDDT 315
GCG++ AD E + PS + + GP P L K P QG E++ASP + + +
Sbjct: 249 GCGEVFAD--ESSVPSLELN-EGPESPTQAAQGLESKVPRG-PLQGSVEQLASPAQNEAS 304
Query: 316 YLQEFWDMLSQTEEQ------GP--EPQEGAAKVAAALETKVVPETPK-DTRCVEAAKDA 366
FWD ++++ Q GP +G + + L+T + E P R + A
Sbjct: 305 DFTRFWDSVNRSVRQQQRALLGPWLSGPQGTDRDQSRLDTAGLAELPLCPCRDPRSGSKA 364
Query: 367 SSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEED----SSSSGK 422
SS+ + P+ EQ E V SDEGY+DS +PG EED S
Sbjct: 365 SSI----------------DTGTPKSEQPESVSTSDEGYYDSFSPGLEEDKKEAESPGTP 408
Query: 423 KAGIPRDSYSGDALYDLYADPDGSP 447
A PRDSYSGDALY+L+ DP P
Sbjct: 409 AATFPRDSYSGDALYELFHDPSEGP 433
>gi|157427663 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 84.3 bits (207), Expect = 3e-16
Identities = 69/205 (33%), Positives = 96/205 (46%), Gaps = 38/205 (18%)
Query: 261 GCGDIIADQEEEAGPSCDKHVPGPGKPA-----LSKKNPGVVAYQGGGEEMASPDEVDDT 315
GCG++ AD E + PS + + GP P L K P QG E++ASP + + +
Sbjct: 249 GCGEVFAD--ESSVPSLELN-EGPESPTQAAQGLESKVPRG-PLQGSVEQLASPAQNEAS 304
Query: 316 YLQEFWDMLSQTEEQ------GP--EPQEGAAKVAAALETKVVPETPK-DTRCVEAAKDA 366
FWD ++++ Q GP +G + + L+T + E P R + A
Sbjct: 305 DFTRFWDSVNRSVRQQQRALLGPWLSGPQGTDRDQSRLDTAGLAELPLCPCRDPRSGSKA 364
Query: 367 SSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEED----SSSSGK 422
SS+ + P+ EQ E V SDEGY+DS +PG EED S
Sbjct: 365 SSI----------------DTGTPKSEQPESVSTSDEGYYDSFSPGLEEDKKEAESPGTP 408
Query: 423 KAGIPRDSYSGDALYDLYADPDGSP 447
A PRDSYSGDALY+L+ DP P
Sbjct: 409 AATFPRDSYSGDALYELFHDPSEGP 433
>gi|157427661 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 84.3 bits (207), Expect = 3e-16
Identities = 69/205 (33%), Positives = 96/205 (46%), Gaps = 38/205 (18%)
Query: 261 GCGDIIADQEEEAGPSCDKHVPGPGKPA-----LSKKNPGVVAYQGGGEEMASPDEVDDT 315
GCG++ AD E + PS + + GP P L K P QG E++ASP + + +
Sbjct: 249 GCGEVFAD--ESSVPSLELN-EGPESPTQAAQGLESKVPRG-PLQGSVEQLASPAQNEAS 304
Query: 316 YLQEFWDMLSQTEEQ------GP--EPQEGAAKVAAALETKVVPETPK-DTRCVEAAKDA 366
FWD ++++ Q GP +G + + L+T + E P R + A
Sbjct: 305 DFTRFWDSVNRSVRQQQRALLGPWLSGPQGTDRDQSRLDTAGLAELPLCPCRDPRSGSKA 364
Query: 367 SSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEED----SSSSGK 422
SS+ + P+ EQ E V SDEGY+DS +PG EED S
Sbjct: 365 SSI----------------DTGTPKSEQPESVSTSDEGYYDSFSPGLEEDKKEAESPGTP 408
Query: 423 KAGIPRDSYSGDALYDLYADPDGSP 447
A PRDSYSGDALY+L+ DP P
Sbjct: 409 AATFPRDSYSGDALYELFHDPSEGP 433
>gi|157427667 hypothetical protein LOC205147 [Homo sapiens]
Length = 861
Score = 84.3 bits (207), Expect = 3e-16
Identities = 69/205 (33%), Positives = 96/205 (46%), Gaps = 38/205 (18%)
Query: 261 GCGDIIADQEEEAGPSCDKHVPGPGKPA-----LSKKNPGVVAYQGGGEEMASPDEVDDT 315
GCG++ AD E + PS + + GP P L K P QG E++ASP + + +
Sbjct: 249 GCGEVFAD--ESSVPSLELN-EGPESPTQAAQGLESKVPRG-PLQGSVEQLASPAQNEAS 304
Query: 316 YLQEFWDMLSQTEEQ------GP--EPQEGAAKVAAALETKVVPETPK-DTRCVEAAKDA 366
FWD ++++ Q GP +G + + L+T + E P R + A
Sbjct: 305 DFTRFWDSVNRSVRQQQRALLGPWLSGPQGTDRDQSRLDTAGLAELPLCPCRDPRSGSKA 364
Query: 367 SSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEED----SSSSGK 422
SS+ + P+ EQ E V SDEGY+DS +PG EED S
Sbjct: 365 SSI----------------DTGTPKSEQPESVSTSDEGYYDSFSPGLEEDKKEAESPGTP 408
Query: 423 KAGIPRDSYSGDALYDLYADPDGSP 447
A PRDSYSGDALY+L+ DP P
Sbjct: 409 AATFPRDSYSGDALYELFHDPSEGP 433
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 48.5 bits (114), Expect = 2e-05
Identities = 67/248 (27%), Positives = 91/248 (36%), Gaps = 49/248 (19%)
Query: 5 RSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKIN 64
+SRGGG R G A++ +R+ A AG E PAA+ G+
Sbjct: 265 KSRGGGDKKLRRQGQNAALAGAKRRGAATAG----------------EKPAAKGRGGRGP 308
Query: 65 KA----------AFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHD---GLAE 111
K+ K ++R T + G K G G+ V+SR G
Sbjct: 309 KSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKP 368
Query: 112 VLVLESGRKEEPRGGGDSGG------GGGGRPNP---GPPR------AAGPGGGSLASSS 156
S + RGGGD G G GR P P R AA P GG S
Sbjct: 369 RRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGG---GSK 425
Query: 157 VAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAE 216
+ + + G+S +G G+ +QK G S R +K R KA AA
Sbjct: 426 KPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAES--RGDKKQGRQKASAAG 483
Query: 217 GRAPGGGL 224
++ GGGL
Sbjct: 484 TKSRGGGL 491
Score = 35.4 bits (80), Expect = 0.14
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 119 RKEEPRGGGDSGGGGGGRPNPGPPRAAGPGGG-SLASSSVAKSHSFFSLLKKNGRSENGK 177
R ++PR G GGGG G ++ G GG S + A S S K R K
Sbjct: 714 RGKKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAK 773
Query: 178 GEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAP 220
+ + G QK G R + R + AA G+ P
Sbjct: 774 SRSGEKAVTAGGQKAAAAGGKKPPRVKSRGGRGQKAAAGGKKP 816
Score = 34.7 bits (78), Expect = 0.23
Identities = 46/184 (25%), Positives = 65/184 (35%), Gaps = 33/184 (17%)
Query: 73 KRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRG------- 125
K + GG + K +GDG+ R R A +K RG
Sbjct: 379 KSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSR 438
Query: 126 GGDSGGGGGGRPN----PGPPRAAGPGG----------------GSLASSSVAKSHSFFS 165
GG S GGG +P +AA G G+ + KSHS +
Sbjct: 439 GGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKN 498
Query: 166 LLKKNGRSENG--KGEPVDASKAGGKQKR----GLRGLFSGMRWHRKDKRAKAEAAEGRA 219
L ++ ++E K A G KQ R + G S + + +R KA AA +
Sbjct: 499 LWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAVAAGATS 558
Query: 220 PGGG 223
GGG
Sbjct: 559 HGGG 562
Score = 32.7 bits (73), Expect = 0.89
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 118 GRKEEPRGGGDSGGGGGGRPNPGPPRAA----GPGGGSLASSSVAKSHSFFSLLKKNGR- 172
G K GG S G GG + G AA G GG AKS S + G+
Sbjct: 728 GAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQK 787
Query: 173 --SENGKGEPVDASKAGGKQKRGLRG 196
+ GK P S+ G QK G
Sbjct: 788 AAAAGGKKPPRVKSRGGRGQKAAAGG 813
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 47.8 bits (112), Expect = 3e-05
Identities = 59/217 (27%), Positives = 78/217 (35%), Gaps = 36/217 (16%)
Query: 268 DQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQT 327
D E P CD VP P NP +G GE +TY E+
Sbjct: 235 DYCEHYSPDCDTAVPDT--PQSQDPNPDEYYTEGDGE--------GETYYYEY-PYYEDP 283
Query: 328 EEQGPEPQEGAAKVAAALETKVVPE--TPKDTRCV------EAAKDASSVKRRRLNRIPI 379
E+ G EP V AA ET VPE TP T E A V + +P
Sbjct: 284 EDLGKEPTPSKKPVEAAKETTEVPEELTPTPTEAAPMPETSEGAGKEEDVGIGDYDYVPS 343
Query: 380 E----PHPKEEPKHPEKEQQEGVP-NSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSG- 433
E P P ++ + E E+ P + G T+ +SS+ G D G
Sbjct: 344 EDYYTPSPYDDLTYGEGEENPDQPTDPGAGAEIPTSTADTSNSSNPAPPPGEGADDLEGE 403
Query: 434 ----------DALYDLYADPDGSPATL-PGGKDNEET 459
+ YD Y DP SP+ + PG N++T
Sbjct: 404 FTEETIRNLDENYYDPYYDPTSSPSEIGPGMPANQDT 440
Score = 32.3 bits (72), Expect = 1.2
Identities = 67/306 (21%), Positives = 95/306 (31%), Gaps = 28/306 (9%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
P G++G G P PGPP GP G A N + KGEP +
Sbjct: 1236 PGEKGETGDVGQMGP-PGPPGPRGPSGAPGADGPQGPPGGI-----GNPGAVGEKGEPGE 1289
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETP 242
A + G + G G K + E E P G PG + + +P
Sbjct: 1290 AGEPGLPGEGGPPG----------PKGERGEKGES-GPSGAAGPPGPKGPPGDDGPKGSP 1338
Query: 243 RAAREPEEPSQDAPRDPAG----CGDIIADQEE-EAGPSCDKHVPGPGKPALSKKNPGVV 297
P +P PAG GD D E + G PGP P + PG
Sbjct: 1339 GPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPA 1398
Query: 298 AYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDT 357
+G E + E + G +G + + + +P +P
Sbjct: 1399 GPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPD 1458
Query: 358 RCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDS 417
+ L + + PK E HP G P D PGP+ S
Sbjct: 1459 ------GPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSS 1512
Query: 418 SSSGKK 423
G++
Sbjct: 1513 GPKGEQ 1518
Score = 31.2 bits (69), Expect = 2.6
Identities = 77/357 (21%), Positives = 104/357 (29%), Gaps = 68/357 (19%)
Query: 88 NKGDGKSSGPTGLVRSRTHDGLAEVLVLES--GRKEEPRGGGDSGGGGGGRPN------- 138
N+G GP G R G A + + G + P G+ G G P
Sbjct: 1076 NEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1135
Query: 139 -------PGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGK-------GEPVDAS 184
PGP GP G + + S K + G G+P +
Sbjct: 1136 LQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSG 1195
Query: 185 KAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEETPRA 244
G RG +GLF +K P G LPG P
Sbjct: 1196 ADGEPGPRGQQGLFG-----QKGDEGPRGFPGPPGPVGLQGLPGP------------PGE 1238
Query: 245 AREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGE 304
E + Q P P G GPS GP P NPG V +G
Sbjct: 1239 KGETGDVGQMGPPGPPG----------PRGPSGAPGADGPQGPPGGIGNPGAVGEKG--- 1285
Query: 305 EMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCVEAAK 364
P E + L E+G + + G + A P PK + K
Sbjct: 1286 ---EPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAG-------PPGPKGPPGDDGPK 1335
Query: 365 DASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSG 421
+ P +P P EP ++ G D + +PGP + SG
Sbjct: 1336 GSPGPVG-----FPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSG 1387
Score = 30.8 bits (68), Expect = 3.4
Identities = 59/232 (25%), Positives = 78/232 (33%), Gaps = 39/232 (16%)
Query: 89 KGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGG--GRPN-------- 138
KGD GP G R DG E P+G G G G G P
Sbjct: 825 KGDRGEIGPPG---PRGEDG-----------PEGPKGRGGPNGDPGPLGPPGEKGKLGVP 870
Query: 139 --PGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPV-DASKAGGKQKRGLR 195
PG P GP G S+ ++ +K GR GK P G + +RG R
Sbjct: 871 GLPGYPGRQGPKG-SIGFPGFPGANG-----EKGGRGTPGKPGPRGQRGPTGPRGERGPR 924
Query: 196 GLFS--GMRWHRK-DKRAKAEAAEG-RAPGGGLILPGSLTASLECVKEETPRAAREPEEP 251
G+ G + + D A G P G PG K+ P + E
Sbjct: 925 GITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGET 984
Query: 252 SQDAPRDPAGCGDIIADQEE--EAGPSCDKHVPGPGKPALSKKNPGVVAYQG 301
P G ++ Q E GP ++ PGP P + PG+ +G
Sbjct: 985 GFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEG 1036
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 46.2 bits (108), Expect = 8e-05
Identities = 91/422 (21%), Positives = 145/422 (34%), Gaps = 31/422 (7%)
Query: 153 ASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKA 212
A SSV + F L+ SE + E K K++ G+ + K
Sbjct: 165 AVSSVVNKFNPFDLISD---SEASQEETTKKQKVVQKEQGKPEGIIKPPLQQQPPKPIPK 221
Query: 213 EAAEGRAPGGGLILPGSLTASL-ECVKEETPRAAREPEEPSQDAPRDPAGCG---DIIAD 268
+ GR P P S+++ E +K + P + + P+Q D A D
Sbjct: 222 QQGPGRDPLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRP 281
Query: 269 QEEEA----GPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDML 324
Q ++A G S +P P KP + + PG Q G E + P L
Sbjct: 282 QTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSG---L 338
Query: 325 SQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCVEAAKDASSVKR---RRLNRIP-IE 380
++ Q P + + + P P + + S ++ + L + P +
Sbjct: 339 TKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVG 398
Query: 381 PHPKEEPKHPEKE--QQEGVPN---SDEGYWD-STTPGPEEDSSSSGKKAGIPRDSYSGD 434
P ++P P K QQ G P G + PGP + IP
Sbjct: 399 KTPAQQPG-PAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPG 457
Query: 435 ALYDLYADPDGSPATLPG-GKDNEETSSLSRLKPVSPGTITCPLRTPGSLLKDSKIPISI 493
P P+ LPG K + ++ P PG+ P + PGS + P
Sbjct: 458 KTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPA 517
Query: 494 KHLTNLPSSHPVVHQQPS----RSEMPRTKIPVSKVLVRRVSNRGLAGTTIRATACHDSA 549
K P S QQP ++ P P ++ + VS G +G ++ SA
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTG-SGKPLQPPTVSPSA 576
Query: 550 KK 551
K+
Sbjct: 577 KQ 578
Score = 33.5 bits (75), Expect = 0.52
Identities = 32/188 (17%), Positives = 70/188 (37%), Gaps = 10/188 (5%)
Query: 244 AAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGG 303
+A+ + P D+ PA + E++ P D P +P + K +V+
Sbjct: 717 SAKAKQPPEADSLSKPAPPKEPSVPSEQDKAPVADDK---PKQPKMVKPTTDLVSSSSAT 773
Query: 304 EEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQ-EGAAKVAAALETKVVPETPKDTRCVEA 362
+ P + +E +T+ P + + ++K +P D++ +
Sbjct: 774 TKPDIPSSKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRPASDSKIISH 833
Query: 363 AKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGK 422
+S K ++ + P ++ + P+K Q + P D +P P ++G+
Sbjct: 834 PGPSSESKGQK------QVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQ 887
Query: 423 KAGIPRDS 430
P+ S
Sbjct: 888 TVPTPQQS 895
Score = 30.4 bits (67), Expect = 4.4
Identities = 46/218 (21%), Positives = 83/218 (38%), Gaps = 28/218 (12%)
Query: 284 PGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAA 343
P P+ K +P V + ++ A P +V QE + + + + K
Sbjct: 1126 PPAPSGPKASPMPVPTESSSQKTAVPPQVKLVKKQE-----QEVKTEAEKVILEKVKETL 1180
Query: 344 ALETKVVPETPKDTRCVEAA--KDASSVKRRRL------NRIPIEPHPKEEPKHPEKEQQ 395
++E K+ P D + E+ KD +S + + IP E + E K P E++
Sbjct: 1181 SME-KIPPMVTTDQKQEESKLEKDKASALQEKKPLPEEKKLIPEEEKIRSEEKKPLLEEK 1239
Query: 396 EGVPNSDEGYWDSTTPGPEEDSSSSGK-KAGIPRDSYSGDALYDLYAD-----------P 443
+ P + ++ T PEE K + I + G + P
Sbjct: 1240 KPTPEDKKLLPEAKTSAPEEQKHDLLKSQVQIAEEKLEGRVAPKTVQEGKQPQTKMEGLP 1299
Query: 444 DGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTPG 481
G+P +LP K++++T+ + +P P T PG
Sbjct: 1300 SGTPQSLP--KEDDKTTKTIKEQPQPPCTAKPDQVEPG 1335
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 46.2 bits (108), Expect = 8e-05
Identities = 91/422 (21%), Positives = 145/422 (34%), Gaps = 31/422 (7%)
Query: 153 ASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKA 212
A SSV + F L+ SE + E K K++ G+ + K
Sbjct: 165 AVSSVVNKFNPFDLISD---SEASQEETTKKQKVVQKEQGKPEGIIKPPLQQQPPKPIPK 221
Query: 213 EAAEGRAPGGGLILPGSLTASL-ECVKEETPRAAREPEEPSQDAPRDPAGCG---DIIAD 268
+ GR P P S+++ E +K + P + + P+Q D A D
Sbjct: 222 QQGPGRDPLQQDGTPKSISSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRP 281
Query: 269 QEEEA----GPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDML 324
Q ++A G S +P P KP + + PG Q G E + P L
Sbjct: 282 QTKQADIVRGESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSG---L 338
Query: 325 SQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCVEAAKDASSVKR---RRLNRIP-IE 380
++ Q P + + + P P + + S ++ + L + P +
Sbjct: 339 TKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVG 398
Query: 381 PHPKEEPKHPEKE--QQEGVPN---SDEGYWD-STTPGPEEDSSSSGKKAGIPRDSYSGD 434
P ++P P K QQ G P G + PGP + IP
Sbjct: 399 KTPAQQPG-PAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPG 457
Query: 435 ALYDLYADPDGSPATLPG-GKDNEETSSLSRLKPVSPGTITCPLRTPGSLLKDSKIPISI 493
P P+ LPG K + ++ P PG+ P + PGS + P
Sbjct: 458 KTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPA 517
Query: 494 KHLTNLPSSHPVVHQQPS----RSEMPRTKIPVSKVLVRRVSNRGLAGTTIRATACHDSA 549
K P S QQP ++ P P ++ + VS G +G ++ SA
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTG-SGKPLQPPTVSPSA 576
Query: 550 KK 551
K+
Sbjct: 577 KQ 578
Score = 33.5 bits (75), Expect = 0.52
Identities = 32/188 (17%), Positives = 70/188 (37%), Gaps = 10/188 (5%)
Query: 244 AAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGG 303
+A+ + P D+ PA + E++ P D P +P + K +V+
Sbjct: 717 SAKAKQPPEADSLSKPAPPKEPSVPSEQDKAPVADDK---PKQPKMVKPTTDLVSSSSAT 773
Query: 304 EEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQ-EGAAKVAAALETKVVPETPKDTRCVEA 362
+ P + +E +T+ P + + ++K +P D++ +
Sbjct: 774 TKPDIPSSKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRPASDSKIISH 833
Query: 363 AKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGK 422
+S K ++ + P ++ + P+K Q + P D +P P ++G+
Sbjct: 834 PGPSSESKGQK------QVDPVQKKEEPKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQ 887
Query: 423 KAGIPRDS 430
P+ S
Sbjct: 888 TVPTPQQS 895
Score = 30.4 bits (67), Expect = 4.4
Identities = 46/218 (21%), Positives = 83/218 (38%), Gaps = 28/218 (12%)
Query: 284 PGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAA 343
P P+ K +P V + ++ A P +V QE + + + + K
Sbjct: 1126 PPAPSGPKASPMPVPTESSSQKTAVPPQVKLVKKQE-----QEVKTEAEKVILEKVKETL 1180
Query: 344 ALETKVVPETPKDTRCVEAA--KDASSVKRRRL------NRIPIEPHPKEEPKHPEKEQQ 395
++E K+ P D + E+ KD +S + + IP E + E K P E++
Sbjct: 1181 SME-KIPPMVTTDQKQEESKLEKDKASALQEKKPLPEEKKLIPEEEKIRSEEKKPLLEEK 1239
Query: 396 EGVPNSDEGYWDSTTPGPEEDSSSSGK-KAGIPRDSYSGDALYDLYAD-----------P 443
+ P + ++ T PEE K + I + G + P
Sbjct: 1240 KPTPEDKKLLPEAKTSAPEEQKHDLLKSQVQIAEEKLEGRVAPKTVQEGKQPQTKMEGLP 1299
Query: 444 DGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTPG 481
G+P +LP K++++T+ + +P P T PG
Sbjct: 1300 SGTPQSLP--KEDDKTTKTIKEQPQPPCTAKPDQVEPG 1335
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.8 bits (107), Expect = 1e-04
Identities = 48/172 (27%), Positives = 62/172 (36%), Gaps = 28/172 (16%)
Query: 73 KRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEP--RGGGDSG 130
KR+ G P + G G G R G + V + G RGGG
Sbjct: 146 KRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGS 205
Query: 131 GGGGGRPNPGPPRAAGPGGGSLASSSV-----AKSHSFFSLLKKNGR----------SEN 175
GGGG P PPRA P G A+ H+ + L ++G+ S
Sbjct: 206 EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSR 265
Query: 176 GKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-----APGG 222
G+G S A + G RG R D RA+ A+ R APGG
Sbjct: 266 GRGAATSVSAAARPTRGGARG------HRRADGRARGGCAQLRAGTPSAPGG 311
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.8 bits (107), Expect = 1e-04
Identities = 48/172 (27%), Positives = 62/172 (36%), Gaps = 28/172 (16%)
Query: 73 KRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEP--RGGGDSG 130
KR+ G P + G G G R G + V + G RGGG
Sbjct: 146 KRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGS 205
Query: 131 GGGGGRPNPGPPRAAGPGGGSLASSSV-----AKSHSFFSLLKKNGR----------SEN 175
GGGG P PPRA P G A+ H+ + L ++G+ S
Sbjct: 206 EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSR 265
Query: 176 GKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-----APGG 222
G+G S A + G RG R D RA+ A+ R APGG
Sbjct: 266 GRGAATSVSAAARPTRGGARG------HRRADGRARGGCAQLRAGTPSAPGG 311
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.8 bits (107), Expect = 1e-04
Identities = 48/172 (27%), Positives = 62/172 (36%), Gaps = 28/172 (16%)
Query: 73 KRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEP--RGGGDSG 130
KR+ G P + G G G R G + V + G RGGG
Sbjct: 146 KRRGWGLRPQRVRSRLAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGS 205
Query: 131 GGGGGRPNPGPPRAAGPGGGSLASSSV-----AKSHSFFSLLKKNGR----------SEN 175
GGGG P PPRA P G A+ H+ + L ++G+ S
Sbjct: 206 EGGGGGARPSPPRARQPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSR 265
Query: 176 GKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGR-----APGG 222
G+G S A + G RG R D RA+ A+ R APGG
Sbjct: 266 GRGAATSVSAAARPTRGGARG------HRRADGRARGGCAQLRAGTPSAPGG 311
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 45.8 bits (107), Expect = 1e-04
Identities = 89/413 (21%), Positives = 142/413 (34%), Gaps = 66/413 (15%)
Query: 93 KSSGPTGLVRSRTHDGLAEVLVLESGRKE-------EPRGGGDSGGGGGGRPNPGPPRAA 145
KS T +V +T + V E KE E GG + GG PP
Sbjct: 449 KSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEE 508
Query: 146 GPGGGSLASSSV---AKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMR 202
A S V AKS + +K + + + +K+ K++ S
Sbjct: 509 AASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAK-----SPPE 563
Query: 203 WHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEE--TPRAAREPEE---PSQDAPR 257
+K AE ++P + KEE +P A+ PE+ P ++ +
Sbjct: 564 AKSPEKEEAKSPAEVKSP----------EKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAK 613
Query: 258 DPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYL 317
PA + +EE P+ V P K K EE SP++
Sbjct: 614 SPAEAKSPV--KEEAKSPA---EVKSPEKAKSPTK-----------EEAKSPEKAK---- 653
Query: 318 QEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRCVEAAKDASSVKRRRLNRI 377
S +E+ P++ + V A ++ ++P K S VK +
Sbjct: 654 -------SPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPE 706
Query: 378 PIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSGDALY 437
+ KEE K PEK + P +E P ++ + S +KA P + + D
Sbjct: 707 KAKSPVKEEAKSPEKAKS---PVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKS 763
Query: 438 DLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTPGSLLKDSKIP 490
P A P K E+ S + + SP PL+ +D+K P
Sbjct: 764 PEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSPLK------EDAKAP 810
Score = 38.5 bits (88), Expect = 0.016
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 10/179 (5%)
Query: 340 KVAAALETKVVPETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVP 399
KV + + KVV ++ K+T VE + + V E KE + KE++ G
Sbjct: 437 KVKSEEKIKVVEKSEKETVIVEEQTEETQVTEE-----VTEEEEKEAKEEEGKEEEGGEE 491
Query: 400 NSDEGYWDSTTPGPEEDSSSSGKKAGIP--RDSYSGDALYDLYADPDGSPATLPGGKDNE 457
EG + T P E+++S K+A P ++ S + SPA + K E
Sbjct: 492 EEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEV---KSPE 548
Query: 458 ETSSLSRLKPVSPGTITCPLRTPGSLLKDSKIPISIKHLTNLPSSHPVVHQQPSRSEMP 516
+ S ++ + SP P + + K P K + P + P +++ P
Sbjct: 549 KAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSP 607
Score = 29.6 bits (65), Expect = 7.5
Identities = 56/259 (21%), Positives = 93/259 (35%), Gaps = 37/259 (14%)
Query: 237 VKEE--TPRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNP 294
VKEE +P A+ PE+ + P + +EEA DK P +
Sbjct: 740 VKEEAKSPEKAKSPEKAKTLDVKSP----EAKTPAKEEARSPADKFPEKAKSPVKEEVKS 795
Query: 295 GVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAA-LETKVVPET 353
A E+ +P++ + + ++ S +E+ +PQE K E + P T
Sbjct: 796 PEKAKSPLKEDAKAPEKE----IPKKEEVKSPVKEE-EKPQEVKVKEPPKKAEEEKAPAT 850
Query: 354 PK-----DTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEG---VP------ 399
PK D++ EA K + + + P PKE +KE+ E VP
Sbjct: 851 PKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEA 910
Query: 400 ------NSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSG-----DALYDLYADPDGSPA 448
D + T +E + K+ P + D + P+ P
Sbjct: 911 PAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPK 970
Query: 449 TLPGGKDNEETSSLSRLKP 467
T K++++T S KP
Sbjct: 971 TEAKAKEDDKTLSKEPSKP 989
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 45.4 bits (106), Expect = 1e-04
Identities = 67/334 (20%), Positives = 120/334 (35%), Gaps = 39/334 (11%)
Query: 168 KKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILP 227
KK+ + + G+ E + K G K ++ + + ++++ + E R
Sbjct: 315 KKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERI-------- 366
Query: 228 GSLTASLECVKEETPRAAREPEEPSQDAPRDPAGC----GDIIADQEEEAGPSCD----- 278
LE ++E R +E E + ++ G ++ + EA +
Sbjct: 367 -KRLEELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKL 425
Query: 279 ---KHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTE--EQGP- 332
+ V P K +L KK P Y+ + P +++ + E ++ + E EQG
Sbjct: 426 LQAQGVEVPSKDSLPKKRP---IYEDKKRKKI-PQQLESKEVSESMELCAAVEVMEQGVP 481
Query: 333 ---------EPQEGAAKVAAALETKVVPETPKDTRCVEAAKDASSVKRRRLNRIPIEPHP 383
EP+E A L+ + ++T VE K VK E
Sbjct: 482 EKEETPPPVEPEEEEDTEDAGLDDWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEEE 541
Query: 384 KEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSGDALYDLYADP 443
+E+ + E+E++EG EG + E+DS + K P S D+ YD D
Sbjct: 542 EEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLDKK--PSKEMSSDSEYDSDDDR 599
Query: 444 DGSPATLPGGKDNEETSSLSRLKPVSPGTITCPL 477
K E L K V+ + P+
Sbjct: 600 TKEERAYDKAKRRIEKRRLEHSKNVNTEKLRAPI 633
Score = 29.6 bits (65), Expect = 7.5
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 300 QGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVVPETPKDTRC 359
Q E ++ D++D L + +EQ P+ +G K + + K+
Sbjct: 5 QKNKSEDSTKDDIDLDALAAEIEGAGAAKEQEPQKSKGKKKKEKKKQDFDEDDILKELE- 63
Query: 360 VEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSS 419
E + +A +K R + ++P E + K++++ + +D ED S
Sbjct: 64 -ELSLEAQGIKADR-ETVAVKPTENNEEEFTSKDKKKKGQKGKKQSFDDNDSEELEDKDS 121
Query: 420 SGKKAGIPR-DSYSG 433
KK P+ + YSG
Sbjct: 122 KSKKTAKPKVEMYSG 136
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 45.1 bits (105), Expect = 2e-04
Identities = 49/174 (28%), Positives = 62/174 (35%), Gaps = 22/174 (12%)
Query: 125 GGGDSGGGG---GGRPNPGPPRA----------AGPGGGSLASSSVAKSHSFFSLLKKNG 171
GGG GG G GG P P PPR G GG AS S + S S K G
Sbjct: 173 GGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASPSPSSS----SAGKTPG 228
Query: 172 RSENGKGEPVDASKAGGKQKRGLRGLFSG--MRWHRKDKRAKAEAAEGR---APGGGLIL 226
G V +GG G +++H K +RA A AA + GGG
Sbjct: 229 TGSRNSGSGVAGGGSGGGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGGSSS 288
Query: 227 PGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKH 280
S + V E A+ P + + P+ A + A PS H
Sbjct: 289 RSSPVSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPH 342
Score = 32.3 bits (72), Expect = 1.2
Identities = 58/256 (22%), Positives = 81/256 (31%), Gaps = 76/256 (29%)
Query: 9 GGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKINKAAF 68
GGG E GGAG G + E GA P PP G K
Sbjct: 166 GGGGGGEGGGAGGGSG----EREGGA-------------------PQPPPPRGWRGKGV- 201
Query: 69 KLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGD 128
+ ++ GG + G+G S P+ +T G G G
Sbjct: 202 ---RAQQRGG---------SGGEGASPSPSSSSAGKT-----------PGTGSRNSGSGV 238
Query: 129 SGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGG 188
+GGG G GGGS +S LKK + + A GG
Sbjct: 239 AGGGSG-------------GGGSYWKEGCLQSELIQFHLKKERAAAAAAAAQMHAKNGGG 285
Query: 189 KQKR-----GLRGLFSGMRWHRKDKRAKA-----EAAEGRAPGGGLILPGSLTASLECVK 238
R G + + A A ++AEG A GGG + A+
Sbjct: 286 SSSRSSPVSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGGG------MQAAAPPSS 339
Query: 239 EETPRAAREPEEPSQD 254
+ P+ +E EE ++
Sbjct: 340 QPHPQQLQEQEEMQEE 355
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 43.9 bits (102), Expect = 4e-04
Identities = 93/345 (26%), Positives = 119/345 (34%), Gaps = 82/345 (23%)
Query: 7 RGGGGAVSERGGAG--ASVGVCRRKAEAG----AGTGTLAADMDLHCDCAAETPAAEPPS 60
RG GA+ +G G +G K E G AG+ L A P A+ P
Sbjct: 1470 RGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPG--------VAGRPGAKGPE 1521
Query: 61 GKINKAAFKLFKKRKSGGTMPSIFGVK------NKGDGKSSGP---TGLVRSRTHDGLAE 111
G + K P++ G KGD +GP TG+ R GL
Sbjct: 1522 GPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGL-- 1579
Query: 112 VLVLESGRKEEP----------RGG--GDSGGGG--GGRPNPGPPRAAGPGGGSLASSSV 157
VL + G K +P R G GDSG G G PGPP GP G
Sbjct: 1580 VLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRG-------- 1631
Query: 158 AKSHSFFSLLKKNGR--SENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAA 215
++G + +G P D G +RGLRG G+R +K + +
Sbjct: 1632 -----------RDGEVGEKGDEGPPGDPGLPGKAGERGLRGA-PGVRGPVGEKGDQGDPG 1679
Query: 216 E-GR-------APGGGLILPGSLTASLECVKEETPRAAREPEEP---SQDAPRDPAGCGD 264
E GR P G PG V +T ARE EP Q+ PR P G
Sbjct: 1680 EDGRNGSPGSSGPKGDRGEPGPPGPPGRLV--DTGPGAREKGEPGDRGQEGPRGPKGDPG 1737
Query: 265 IIADQEEEA--------GPSCDKHVPGPGKPALSKKNPGVVAYQG 301
+ E GP D V GP + PG+ G
Sbjct: 1738 LPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSG 1782
Score = 36.2 bits (82), Expect = 0.080
Identities = 54/190 (28%), Positives = 69/190 (36%), Gaps = 19/190 (10%)
Query: 118 GRKEEPRGGGDSG--GGGGGRPNPG-PPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSE 174
G+K EP G+ G G G +PG P R PG S+ AK F S
Sbjct: 1254 GQKGEP---GEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSP 1310
Query: 175 NGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKAE-AAEGRAPGG-GLILPGSLTA 232
G P G K GL G G R + K E A G+ GG G LPG
Sbjct: 1311 GRAGNPGTPGAPGLKGSPGLPGP-RGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGR--- 1366
Query: 233 SLECVKEETPRAAREPEEPSQD-APRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSK 291
+ P P P D PR P G + + G ++ PGPG+ ++
Sbjct: 1367 ----KGDPGPSGPPGPRGPLGDPGPRGPPGLPG--TAMKGDKGDRGERGPPGPGEGGIAP 1420
Query: 292 KNPGVVAYQG 301
PG+ G
Sbjct: 1421 GEPGLPGLPG 1430
Score = 31.6 bits (70), Expect = 2.0
Identities = 63/227 (27%), Positives = 77/227 (33%), Gaps = 35/227 (15%)
Query: 77 GGTMPSIFGVKNKGDGKSSGPTGL------VRSRTHDGLAEVLVL-ESGRKEE--PRGGG 127
GG P + G KGD SGP G R GL + + G + E P G G
Sbjct: 1357 GGEGPGLPG--RKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPG 1414
Query: 128 DSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENG-KGEPVDASKA 186
+ G G PG P + GP G + G SE+G G P
Sbjct: 1415 EGGIAPGEPGLPGLPGSPGPQGPVGPPGKKG----------EKGDSEDGAPGLPGQPGSP 1464
Query: 187 GGKQKRGLRGLFSGMRWHRKDKRAKAEAAE-----GRAPGGGLILPGSLTASLECVKEET 241
G + RG G G + R EA E P G LPG E
Sbjct: 1465 GEQGPRGPPGAI-GPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523
Query: 242 P-RAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKP 287
P R+ E+ P DPA G + AGP +K GP P
Sbjct: 1524 PGPTGRQGEKGEPGRPGDPAVVGPAV------AGPKGEKGDVGPAGP 1564
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 43.1 bits (100), Expect = 7e-04
Identities = 60/223 (26%), Positives = 82/223 (36%), Gaps = 21/223 (9%)
Query: 51 AETPAAEPPSGKINKAAFKLFKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGL- 109
A P + PP AA S G PS G G G +S T + +
Sbjct: 79 APEPLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQ 138
Query: 110 AEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAGPGG-----GSLASSSVAKSHSFF 164
L S E GGG GGGGGG G G GG GS AS +++
Sbjct: 139 TSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSA 198
Query: 165 SL--LKKNGRSENGKGEP--VDASKAGGKQKRGLRGLFSGMRW-HRKDKRAK--AEAAEG 217
L L+K P V+ + +R ++ F R ++KD++AK A ++ G
Sbjct: 199 QLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGG 258
Query: 218 RAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPA 260
+P G P TA A PS ++P PA
Sbjct: 259 PSPAGSPPQPMQSTAGF--------MNALHSMTPSYESPSPPA 293
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 41.6 bits (96), Expect = 0.002
Identities = 72/252 (28%), Positives = 97/252 (38%), Gaps = 39/252 (15%)
Query: 96 GPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASS 155
G G R DG VL G + EPR +GG R P PP A G ++ SS
Sbjct: 3 GGDGAAFKRPGDGARLQRVLGLGSRREPRSL-PAGGPAPRRTAPPPPGHASAGPAAM-SS 60
Query: 156 SVAKSHSFFSLLKKNGRSENG--KGEPVDASKAGGKQKRGLRG------LFSGMRWHRKD 207
+AKS S SLLK + +G + ++ G R L G SG R+
Sbjct: 61 HIAKSESKTSLLKAAAAAASGGSRAPRHGPARDPGLPSRRLPGSCPATPQSSGDPSSRRP 120
Query: 208 KRAKAEAAEGRAPGGGLILPGSLTASLEC-VKEETPRAAREPEEPSQDAPRDPAGCGDII 266
A EG A G +LP C +E P AA PS +P PA D
Sbjct: 121 LCRPAPREEG-ARGSQRVLP-----QAHCRPREALPAAA---SRPSPSSPLPPARGRD-- 169
Query: 267 ADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQ 326
EE G S PAL + G + +G G+ + + D +L MLS
Sbjct: 170 ---GEERGLS----------PALGLR--GSLRARGRGDSVPAAASEADPFLHRLRPMLSS 214
Query: 327 T--EEQGPEPQE 336
+++ P+E
Sbjct: 215 AFGQDRSLRPEE 226
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 130 GGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGK 189
G GGG P P P A GPGGG + +A + + L K + + E G +++G
Sbjct: 199 GAGGGPPPAPPLPAAQGPGGGGAGAPGLAAAIAGAKLRKVSKQEEASGGPTAPKAESGRS 258
Query: 190 QKRGLRGLFSGMRWHR-----------KDKRAKAEAAEGRAP 220
GL + M R KD+ A E E R P
Sbjct: 259 GGGGLMEEMNAMLARRRKATQVGEKTPKDESANQEEPEARVP 300
Score = 33.1 bits (74), Expect = 0.68
Identities = 38/150 (25%), Positives = 55/150 (36%), Gaps = 30/150 (20%)
Query: 119 RKEEPRGGGDSGGGGGGRPNPGPPRAAG--PGGGSLASSSVAKSHSFFSLLKKNGRSENG 176
R+ GG + GG P PGPP G P G S A +H G
Sbjct: 154 RRVSNAGGPPAPPAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHG------------AG 201
Query: 177 KGEP-------VDASKAGGKQKRGLRGLFSGMRWHRKDKRAKA-------EAAEGRAPGG 222
G P GG GL +G + + K+ +A +A GR+ GG
Sbjct: 202 GGPPPAPPLPAAQGPGGGGAGAPGLAAAIAGAKLRKVSKQEEASGGPTAPKAESGRSGGG 261
Query: 223 GLILPGSLTASLECVKEETPRAAREPEEPS 252
GL+ + A L ++ T + P++ S
Sbjct: 262 GLM--EEMNAMLARRRKATQVGEKTPKDES 289
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/44 (47%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAA----------GPGGGSLASSS 156
P GGG GG GG P PGPP A GPGGGS S
Sbjct: 16 PAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGGPS 59
Score = 36.2 bits (82), Expect = 0.080
Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 123 PRGGGDSG-GGGGGRPNPGPPRA-----AGPGGGSLASSS 156
P GG G GG GG P PGPP A GPGGG S
Sbjct: 15 PPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGS 54
Score = 33.1 bits (74), Expect = 0.68
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAG----PGGG 150
P G GD GGGG G PG A G PGGG
Sbjct: 34 PPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGG 65
Score = 30.8 bits (68), Expect = 3.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 125 GGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVA 158
GGG GGG GG GP + G GG + + A
Sbjct: 42 GGGPGGGGPGGGSAGGPSQPPGGGGPGIRKDAFA 75
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 40.8 bits (94), Expect = 0.003
Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 37/226 (16%)
Query: 85 GVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRA 144
G++ +G G ++ GL R LA+V GR E+ + +G G G P+
Sbjct: 145 GLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRAEDLQ----AGAGPRGAAEAQAPQL 200
Query: 145 AGPGGGSLASSSVAKSHSFFSLLKKN---GRSENGKGEPVDASKAGGKQKRGLRG----- 196
G G LA+ ++ + + ++ GR+ +G G P +Q+R G
Sbjct: 201 LGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHG-GLPAPQHAVAVEQQRVHVGQQRLC 259
Query: 197 -----------LFSGMRWHRKDKRAKAEAAE----GRAPGGGLILPGSLTASLECVKEET 241
+ +G+R R+ +R A AA A G L PG+L
Sbjct: 260 PLGAQPHAAGVVATGLR--RRHRRPPAAAARRPLLAAARRGALPAPGALIGP-------A 310
Query: 242 PRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKP 287
PRA R + P PAGCG E G D +P G+P
Sbjct: 311 PRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRP 356
>gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 39/187 (20%)
Query: 275 PSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYL-------QEFWDMLSQT 327
P C+K +P PGKP L V++ QG + D + L Q+ + L +
Sbjct: 29 PQCEKLLPAPGKPGLR-----VISRQG----KVGWIDYDSSLLLHTITSPQDSFLGLRRG 79
Query: 328 EEQGPEPQEGAAKVA-------AALETKVVPE--TPKDTRCVEAAKDASSVKRRRLNRIP 378
E P Q A + A+ +P+ T D + +A D + RL+ P
Sbjct: 80 ENDPPTDQSLCAAASRAQHLSPTAVTAATLPKRKTEGDVKGDKAKVDTPQRRSTRLSAKP 139
Query: 379 IEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSGDALYD 438
P P+ +PK ++ E VP +G + +GK+ P + GDA+ D
Sbjct: 140 APPKPEPKPKKAPAKKGEKVPKGKKG------------KADAGKEGNYPAE--KGDAITD 185
Query: 439 LYADPDG 445
+ +G
Sbjct: 186 QAREAEG 192
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 40.8 bits (94), Expect = 0.003
Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 37/226 (16%)
Query: 85 GVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRA 144
G++ +G G ++ GL R LA+V GR E+ + +G G G P+
Sbjct: 145 GLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRAEDLQ----AGAGPRGAAEAQAPQL 200
Query: 145 AGPGGGSLASSSVAKSHSFFSLLKKN---GRSENGKGEPVDASKAGGKQKRGLRG----- 196
G G LA+ ++ + + ++ GR+ +G G P +Q+R G
Sbjct: 201 LGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHG-GLPAPQHAVAVEQQRVHVGQQRLC 259
Query: 197 -----------LFSGMRWHRKDKRAKAEAAE----GRAPGGGLILPGSLTASLECVKEET 241
+ +G+R R+ +R A AA A G L PG+L
Sbjct: 260 PLGAQPHAAGVVATGLR--RRHRRPPAAAARRPLLAAARRGALPAPGALIGP-------A 310
Query: 242 PRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKP 287
PRA R + P PAGCG E G D +P G+P
Sbjct: 311 PRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRP 356
>gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo
sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 39/187 (20%)
Query: 275 PSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYL-------QEFWDMLSQT 327
P C+K +P PGKP L V++ QG + D + L Q+ + L +
Sbjct: 29 PQCEKLLPAPGKPGLR-----VISRQG----KVGWIDYDSSLLLHTITSPQDSFLGLRRG 79
Query: 328 EEQGPEPQEGAAKVA-------AALETKVVPE--TPKDTRCVEAAKDASSVKRRRLNRIP 378
E P Q A + A+ +P+ T D + +A D + RL+ P
Sbjct: 80 ENDPPTDQSLCAAASRAQHLSPTAVTAATLPKRKTEGDVKGDKAKVDTPQRRSTRLSAKP 139
Query: 379 IEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSGDALYD 438
P P+ +PK ++ E VP +G + +GK+ P + GDA+ D
Sbjct: 140 APPKPEPKPKKAPAKKGEKVPKGKKG------------KADAGKEGNYPAE--KGDAITD 185
Query: 439 LYADPDG 445
+ +G
Sbjct: 186 QAREAEG 192
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 40.8 bits (94), Expect = 0.003
Identities = 57/226 (25%), Positives = 87/226 (38%), Gaps = 37/226 (16%)
Query: 85 GVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPGPPRA 144
G++ +G G ++ GL R LA+V GR E+ + +G G G P+
Sbjct: 145 GLQLRGQGWAAQHVGLGRGGAGQALAQVERGAVGRAEDLQ----AGAGPRGAAEAQAPQL 200
Query: 145 AGPGGGSLASSSVAKSHSFFSLLKKN---GRSENGKGEPVDASKAGGKQKRGLRG----- 196
G G LA+ ++ + + ++ GR+ +G G P +Q+R G
Sbjct: 201 LGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHG-GLPAPQHAVAVEQQRVHVGQQRLC 259
Query: 197 -----------LFSGMRWHRKDKRAKAEAAE----GRAPGGGLILPGSLTASLECVKEET 241
+ +G+R R+ +R A AA A G L PG+L
Sbjct: 260 PLGAQPHAAGVVATGLR--RRHRRPPAAAARRPLLAAARRGALPAPGALIGP-------A 310
Query: 242 PRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKP 287
PRA R + P PAGCG E G D +P G+P
Sbjct: 311 PRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALGRP 356
>gi|239741624 PREDICTED: hypothetical protein XP_002342251 [Homo
sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.003
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 39/187 (20%)
Query: 275 PSCDKHVPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYL-------QEFWDMLSQT 327
P C+K +P PGKP L V++ QG + D + L Q+ + L +
Sbjct: 29 PQCEKLLPAPGKPGLR-----VISRQG----KVGWIDYDSSLLLHTITSPQDSFLGLRRG 79
Query: 328 EEQGPEPQEGAAKVA-------AALETKVVPE--TPKDTRCVEAAKDASSVKRRRLNRIP 378
E P Q A + A+ +P+ T D + +A D + RL+ P
Sbjct: 80 ENDPPTDQSLCAAASRAQHLSPTAVTAATLPKRKTEGDVKGDKAKVDTPQRRSTRLSAKP 139
Query: 379 IEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSSGKKAGIPRDSYSGDALYD 438
P P+ +PK ++ E VP +G + +GK+ P + GDA+ D
Sbjct: 140 APPKPEPKPKKAPAKKGEKVPKGKKG------------KADAGKEGNYPAE--KGDAITD 185
Query: 439 LYADPDG 445
+ +G
Sbjct: 186 QAREAEG 192
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 40.4 bits (93), Expect = 0.004
Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 24/196 (12%)
Query: 123 PRGGGDSGGGGGGRPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVD 182
P GG SG G GPP G G +S++ +++ S +G+ +G G
Sbjct: 888 PGPGGPSGTSSSGSKASGPPNPPAQGDG----TSLSPNYTLESTSGNDGKPVSGGG---- 939
Query: 183 ASKAGGKQKRGLRGLFSGMRWHRKDKRAKAEAAEGRAPGGGLILPGSLTASLECVKEET- 241
+ G++KR + G + DK + A + G APG + PG AS V +
Sbjct: 940 -GRGRGRRKRDSGHVSPGTFF---DKYSAAPDS-GGAPG---VSPGQQQASGAAVGGSSA 991
Query: 242 --PRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKHVPGPGKPALSKKNPGVVAY 299
R A P E + +P G ++ DQ + G + G K S N G A
Sbjct: 992 GETRGAPTPHEKALTSPSWGKGAELLLGDQPDLIG-----SLDGGAKSDSSSPNVGEFAS 1046
Query: 300 QGGGEEMASPDEVDDT 315
A+ DEV +
Sbjct: 1047 DEVSTSYANEDEVSSS 1062
Score = 29.3 bits (64), Expect = 9.8
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 125 GGGDSGGGGGGRPNPGPP 142
GGG SGGGGGG P P
Sbjct: 772 GGGSSGGGGGGGAYPPQP 789
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 40.0 bits (92), Expect = 0.006
Identities = 52/169 (30%), Positives = 65/169 (38%), Gaps = 23/169 (13%)
Query: 76 SGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGG---- 131
SGG S G ++G S+G + DG SG + P GG SGG
Sbjct: 517 SGGNQCSGEGQGSRGGQGSNGQGSGGNQCSRDGQGTAGGHGSGGGQRPGGGHGSGGGQGP 576
Query: 132 ----GGGGRPNPGPPRAAGPGGGSLASSSVAKS---HSFFSLLKKNGRSE-----NGKGE 179
G GG N G + +G G GS KS S+F L ++ + +
Sbjct: 577 GDGHGSGGGKNSGGGKGSGSGKGSDGDGERGKSLKKRSYFGKLTQSKQQQMPPPPPPPPP 636
Query: 180 PVDASKAGGKQKRG--LRGLFSGMRWHRKD-KRAK----AEAAEGRAPG 221
P A GGK K G R F R K+ K AK AE EG A G
Sbjct: 637 PPPAGGTGGKGKSGGRFRLYFCVDRGATKECKEAKEVKDAEIPEGAARG 685
Score = 33.9 bits (76), Expect = 0.40
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 19/112 (16%)
Query: 118 GRKEEPRGGGDSGGGGGG---RPNPGPPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSE 174
G + P+G D G GG N G G GGG ++ + SHS G
Sbjct: 469 GEEGNPQGKEDQEGSGGDYMPMNNWGSGNGRGSGGGQGSNGQGSSSHS------SGGNQC 522
Query: 175 NGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRAKA---EAAEGRAPGGG 223
+G+G+ G + +G G SG +D + A + G+ PGGG
Sbjct: 523 SGEGQ-------GSRGGQGSNGQGSGGNQCSRDGQGTAGGHGSGGGQRPGGG 567
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,501,055
Number of Sequences: 37866
Number of extensions: 1828042
Number of successful extensions: 14684
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 644
Number of HSP's that attempted gapping in prelim test: 10120
Number of HSP's gapped (non-prelim): 3684
length of query: 552
length of database: 18,247,518
effective HSP length: 107
effective length of query: 445
effective length of database: 14,195,856
effective search space: 6317155920
effective search space used: 6317155920
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.