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Search of human proteins with 12548785
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12548785 gamma-aminobutyric acid (GABA) A receptor, beta 2
isoform 1 [Homo sapiens]
(512 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12548785 gamma-aminobutyric acid (GABA) A receptor, beta 2 is... 1036 0.0
gi|4503865 gamma-aminobutyric acid (GABA) A receptor, beta 2 iso... 937 0.0
gi|4503867 gamma-aminobutyric acid (GABA) A receptor, beta 3 iso... 754 0.0
gi|194097327 gamma-aminobutyric acid (GABA) A receptor, beta 1 p... 750 0.0
gi|12548788 gamma-aminobutyric acid (GABA) A receptor, beta 3 is... 734 0.0
gi|8924258 gamma-aminobutyric acid (GABA) receptor, theta precur... 370 e-102
gi|34734071 gamma-aminobutyric acid (GABA) A receptor, delta pre... 330 2e-90
gi|194097386 gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom... 302 4e-82
gi|7657106 gamma-aminobutyric acid (GABA) A receptor, pi [Homo s... 299 4e-81
gi|153266866 gamma-aminobutyric acid (GABA) receptor, rho 2 prec... 295 5e-80
gi|157743288 gamma-aminobutyric acid (GABA) receptor, rho 3 [Hom... 292 6e-79
gi|110347441 glycine receptor, alpha 3 isoform a [Homo sapiens] 285 5e-77
gi|38788135 gamma-aminobutyric acid A receptor, gamma 2 isoform ... 282 6e-76
gi|38788155 gamma-aminobutyric acid A receptor, gamma 2 isoform ... 282 6e-76
gi|169646723 glycine receptor, alpha 2 isoform A [Homo sapiens] 282 6e-76
gi|4504021 glycine receptor, alpha 2 isoform A [Homo sapiens] 282 6e-76
gi|169646728 glycine receptor, alpha 2 isoform B [Homo sapiens] 281 8e-76
gi|110347433 glycine receptor, alpha 3 isoform b [Homo sapiens] 281 1e-75
gi|225903367 glycine receptor, alpha 1 isoform 1 precursor [Homo... 280 2e-75
gi|119372310 glycine receptor, alpha 1 isoform 2 precursor [Homo... 280 2e-75
gi|218156328 glycine receptor, alpha 4 precursor [Homo sapiens] 280 2e-75
gi|31742490 gamma-aminobutyric acid A receptor, gamma 1 precurso... 270 3e-72
gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precurso... 270 3e-72
gi|110347416 gamma-aminobutyric acid (GABA) A receptor, gamma 3 ... 268 9e-72
gi|167000817 gamma-aminobutyric acid A receptor, alpha 2 [Homo s... 262 5e-70
gi|167000751 gamma-aminobutyric acid A receptor, alpha 2 precurs... 262 5e-70
gi|189083762 gamma-aminobutyric acid A receptor, gamma 2 isoform... 260 2e-69
gi|189083734 gamma-aminobutyric acid (GABA) A receptor, alpha 1 ... 259 3e-69
gi|189083732 gamma-aminobutyric acid (GABA) A receptor, alpha 1 ... 259 3e-69
gi|189083730 gamma-aminobutyric acid (GABA) A receptor, alpha 1 ... 259 3e-69
>gi|12548785 gamma-aminobutyric acid (GABA) A receptor, beta 2
isoform 1 [Homo sapiens]
Length = 512
Score = 1036 bits (2680), Expect = 0.0
Identities = 512/512 (100%), Positives = 512/512 (100%)
Query: 1 MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV 60
MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV
Sbjct: 1 MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV 60
Query: 61 AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT 120
AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT
Sbjct: 61 AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT 120
Query: 121 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES 180
YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES
Sbjct: 121 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES 180
Query: 181 YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR 240
YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR
Sbjct: 181 YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR 240
Query: 241 NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP 300
NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
Sbjct: 241 NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP 300
Query: 301 YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKI 360
YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKI
Sbjct: 301 YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKI 360
Query: 361 FYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEA 420
FYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEA
Sbjct: 361 FYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEA 420
Query: 421 VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPD 480
VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPD
Sbjct: 421 VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPD 480
Query: 481 LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
Sbjct: 481 LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
>gi|4503865 gamma-aminobutyric acid (GABA) A receptor, beta 2
isoform 2 [Homo sapiens]
Length = 474
Score = 937 bits (2421), Expect = 0.0
Identities = 474/512 (92%), Positives = 474/512 (92%), Gaps = 38/512 (7%)
Query: 1 MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV 60
MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV
Sbjct: 1 MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV 60
Query: 61 AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT 120
AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT
Sbjct: 61 AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT 120
Query: 121 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES 180
YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES
Sbjct: 121 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES 180
Query: 181 YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR 240
YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR
Sbjct: 181 YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR 240
Query: 241 NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP 300
NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
Sbjct: 241 NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP 300
Query: 301 YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKI 360
YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK
Sbjct: 301 YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK- 359
Query: 361 FYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEA 420
MDPHENILLSTLEIKNEMATSEA
Sbjct: 360 -------------------------------------MDPHENILLSTLEIKNEMATSEA 382
Query: 421 VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPD 480
VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPD
Sbjct: 383 VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPD 442
Query: 481 LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
Sbjct: 443 LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN 474
>gi|4503867 gamma-aminobutyric acid (GABA) A receptor, beta 3
isoform 1 precursor [Homo sapiens]
Length = 473
Score = 754 bits (1947), Expect = 0.0
Identities = 379/513 (73%), Positives = 420/513 (81%), Gaps = 41/513 (7%)
Query: 1 MWRVRKRGYFGIWSFPLIIAAVC-AQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPP 59
MW + FGI+S P+++A VC AQSVNDP NMS VKETVD+LLKGYDIRLRPDFGGPP
Sbjct: 1 MWGLAGGRLFGIFSAPVLVAVVCCAQSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGPP 60
Query: 60 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPD 119
V VGMNIDIASIDMVSEVNMDYTLTMYFQQ WRDKRL+Y+ IPLNLTLDNRVADQLWVPD
Sbjct: 61 VCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPLNLTLDNRVADQLWVPD 120
Query: 120 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE 179
TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
Sbjct: 121 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE 180
Query: 180 SYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLK 239
SYGYTTDDIEFYWRG D AVTGV +IELPQFSIV+++L+++ VVF+TG+YPRLSLSF+LK
Sbjct: 181 SYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLK 240
Query: 240 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI 299
RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI
Sbjct: 241 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI 300
Query: 300 PYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK 359
PYVKAIDMYLMGCFVFVF+ALLEYA VNYIFFGRGPQRQKK AEK A A N++ + + N+
Sbjct: 301 PYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSKSESNR 360
Query: 360 IFYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSE 419
+ D H NILL++LE+ NEM +E
Sbjct: 361 V--------------------------------------DAHGNILLTSLEVHNEM--NE 380
Query: 420 AVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIP 479
G+GD R++ +++D S IQYRK +PR GR +R + KK+ LRRR+SQLKI IP
Sbjct: 381 VSGGIGDTRNSAISFDNSGIQYRKQSMPREGHGRFLGDRSLPHKKTHLRRRSSQLKIKIP 440
Query: 480 DLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
DLTDVNAIDRWSRI FP FS FN+VYWLYYVN
Sbjct: 441 DLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYVN 473
>gi|194097327 gamma-aminobutyric acid (GABA) A receptor, beta 1
precursor [Homo sapiens]
Length = 474
Score = 750 bits (1937), Expect = 0.0
Identities = 376/513 (73%), Positives = 422/513 (82%), Gaps = 40/513 (7%)
Query: 1 MWRVRKRGYFGIWSFPLIIAAVC-AQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPP 59
MW V+ R G+ SFP++I VC A S N+PSNMS VKETVDRLLKGYDIRLRPDFGGPP
Sbjct: 1 MWTVQNRESLGLLSFPVMITMVCCAHSTNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPP 60
Query: 60 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPD 119
V VGM ID+ASIDMVSEVNMDYTLTMYFQQ+W+DKRLSY+ IPLNLTLDNRVADQLWVPD
Sbjct: 61 VDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDKRLSYSGIPLNLTLDNRVADQLWVPD 120
Query: 120 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE 179
TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
Sbjct: 121 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE 180
Query: 180 SYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLK 239
SYGYTTDDIEFYW G + AVTGV KIELPQFSIVDYK+++KKV F+TG+YPRLSLSF+LK
Sbjct: 181 SYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVDYKMVSKKVEFTTGAYPRLSLSFRLK 240
Query: 240 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI 299
RNIGYFILQTYMPS LITILSWVSFWINYDASAARVALGITTVLTMTTI+THLRETLPKI
Sbjct: 241 RNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKI 300
Query: 300 PYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK 359
PYVKAID+YLMGCFVFVF+ALLEYA VNYIFFG+GP QKK A K + NEK +L++NK
Sbjct: 301 PYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGP--QKKGASKQDQSANEKNKLEMNK 358
Query: 360 IFYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSE 419
+ +D H NILLSTLEI+NE + SE
Sbjct: 359 V------------------------------------QVDAHGNILLSTLEIRNETSGSE 382
Query: 420 AVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIP 479
+ + DP++TM +YD++SIQYRK R ++GR AL+RH K R+RRRASQLK+ IP
Sbjct: 383 VLTSVSDPKATMYSYDSASIQYRKPLSSREAYGR-ALDRHGVPSKGRIRRRASQLKVKIP 441
Query: 480 DLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
DLTDVN+ID+WSR+FFP+ FS FN+VYWLYYV+
Sbjct: 442 DLTDVNSIDKWSRMFFPITFSLFNVVYWLYYVH 474
>gi|12548788 gamma-aminobutyric acid (GABA) A receptor, beta 3
isoform 2 precursor [Homo sapiens]
Length = 473
Score = 734 bits (1895), Expect = 0.0
Identities = 367/488 (75%), Positives = 404/488 (82%), Gaps = 40/488 (8%)
Query: 25 QSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLT 84
+SVNDP NMS VKETVD+LLKGYDIRLRPDFGGPPV VGMNIDIASIDMVSEVNMDYTLT
Sbjct: 26 RSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLT 85
Query: 85 MYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHP 144
MYFQQ WRDKRL+Y+ IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHP
Sbjct: 86 MYFQQYWRDKRLAYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHP 145
Query: 145 DGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTK 204
DGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRG D AVTGV +
Sbjct: 146 DGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVER 205
Query: 205 IELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSF 264
IELPQFSIV+++L+++ VVF+TG+YPRLSLSF+LKRNIGYFILQTYMPSILITILSWVSF
Sbjct: 206 IELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSF 265
Query: 265 WINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYA 324
WINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVF+ALLEYA
Sbjct: 266 WINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYA 325
Query: 325 LVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKIFYKDIKQNGTQYRSLWDPTGNLSP 384
VNYIFFGRGPQRQKK AEK A A N++ + + N++
Sbjct: 326 FVNYIFFGRGPQRQKKLAEKTAKAKNDRSKSESNRV------------------------ 361
Query: 385 TRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKA 444
D H NILL++LE+ NEM +E G+GD R++ +++D S IQYRK
Sbjct: 362 --------------DAHGNILLTSLEVHNEM--NEVSGGIGDTRNSAISFDNSGIQYRKQ 405
Query: 445 GLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNI 504
+PR GR +R + KK+ LRRR+SQLKI IPDLTDVNAIDRWSRI FP FS FN+
Sbjct: 406 SMPREGHGRFLGDRSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNL 465
Query: 505 VYWLYYVN 512
VYWLYYVN
Sbjct: 466 VYWLYYVN 473
>gi|8924258 gamma-aminobutyric acid (GABA) receptor, theta precursor
[Homo sapiens]
Length = 632
Score = 370 bits (950), Expect = e-102
Identities = 162/310 (52%), Positives = 239/310 (77%)
Query: 31 SNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQA 90
+N ++V++ +DR+L YD+RLRP+FGG PV V ++I + SI+ +SE+NMDYT+TM+F Q
Sbjct: 54 ANEAVVQKILDRVLSRYDVRLRPNFGGAPVPVRISIYVTSIEQISEMNMDYTITMFFHQT 113
Query: 91 WRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLY 150
W+D RL+Y LNLTLD R+ ++LWVPD YFLN K +FVH VTV+NR+ +LHPDGTV Y
Sbjct: 114 WKDSRLAYYETTLNLTLDYRMHEKLWVPDCYFLNSKDAFVHDVTVENRVFQLHPDGTVRY 173
Query: 151 GLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQF 210
G+R+TTTAAC +DL ++P+D+Q C L +ESYGYT +DI +W + NA+ ++ +PQF
Sbjct: 174 GIRLTTTAACSLDLHKFPMDKQACNLVVESYGYTVEDIILFWDDNGNAIHMTEELHIPQF 233
Query: 211 SIVDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDA 270
+ + + +K+V F TGSY RL L F+++R + +++Q Y P++L TI SW+SFW+NYD+
Sbjct: 234 TFLGRTITSKEVYFYTGSYIRLILKFQVQREVNSYLVQVYWPTVLTTITSWISFWMNYDS 293
Query: 271 SAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIF 330
SAARV +G+T++L +TTI++HLR+ LP I +KAID+Y++ C FVF++LLEY +NY+F
Sbjct: 294 SAARVTIGLTSMLILTTIDSHLRDKLPNISCIKAIDIYILVCLFFVFLSLLEYVYINYLF 353
Query: 331 FGRGPQRQKK 340
+ RGP+RQ +
Sbjct: 354 YSRGPRRQPR 363
Score = 43.5 bits (101), Expect = 5e-04
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 484 VNAIDRWSRIFFPVVFSFFNIVYWLYYV 511
V +D+WSR FP+ F FNIVYW+Y++
Sbjct: 604 VPKVDKWSRFLFPLAFGLFNIVYWVYHM 631
>gi|34734071 gamma-aminobutyric acid (GABA) A receptor, delta
precursor [Homo sapiens]
Length = 452
Score = 330 bits (846), Expect = 2e-90
Identities = 179/411 (43%), Positives = 257/411 (62%), Gaps = 21/411 (5%)
Query: 40 VDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
+D L+ GY RP GGPPV V + +++ASID +SE NM+YT+T++ Q+WRD RLSYN
Sbjct: 44 LDGLIAGYARNFRPGIGGPPVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLSYN 103
Query: 100 VIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAA 159
L LD+R D+LW+PDT+ +N K ++ H VTV+N++IRL PDG +LY +RIT+T A
Sbjct: 104 HTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVA 163
Query: 160 CMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLIT 219
C MDL +YP+DEQ C L++ESYGY+++DI +YW + G+ K++L QF+I Y+ T
Sbjct: 164 CDMDLAKYPMDEQECMLDLESYGYSSEDIVYYWSESQEHIHGLDKLQLAQFTITSYRFTT 223
Query: 220 KKVVF-STGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALG 278
+ + F S G +PRLSL F L+RN G +I+Q+YMPS+L+ +SWVSFWI+ A ARV+LG
Sbjct: 224 ELMNFKSAGQFPRLSLHFHLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLG 283
Query: 279 ITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQ 338
ITTVLTMTT+ R +LP+ +KA+D+Y C+VFVF AL+EYA + F +++
Sbjct: 284 ITTVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALVEYA---FAHFNADYRKK 340
Query: 339 KKAAEKAASANNEKMRLDV-NKIFYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYT 397
+KA K + E +DV N I + G T L+ +RR +L
Sbjct: 341 QKAKVKVSRPRAE---MDVRNAIVLFSLSAAGV--------TQELAISRRQRRVPGNL-- 387
Query: 398 MDPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQ-YRKAGLP 447
M + ++ + T E K E A G G R+ + DA +I Y +A P
Sbjct: 388 MGSYRSVGVETGETKKEGAARSG--GQGGIRARLRPIDADTIDIYARAVFP 436
>gi|194097386 gamma-aminobutyric acid (GABA) receptor, rho 1 [Homo
sapiens]
Length = 479
Score = 302 bits (774), Expect = 4e-82
Identities = 142/295 (48%), Positives = 210/295 (71%), Gaps = 2/295 (0%)
Query: 47 YDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY-NVIPLNL 105
+D +RP FGGP + VG+++ + S+D +SEV+MD+T+T+Y + W+D+RLS+ + L++
Sbjct: 84 HDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLSFPSTNNLSM 143
Query: 106 TLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLR 165
T D R+ ++WVPD +F++ K+SF+H T N M+R+ PDG VLY LR+T TA C MD
Sbjct: 144 TFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVLYSLRVTVTAMCNMDFS 203
Query: 166 RYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVF- 224
R+PLD Q C+LEIESY YT DD+ YW+ ++++ +I L QF I ++ TK +
Sbjct: 204 RFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLSQFLIQEFHTTTKLAFYS 263
Query: 225 STGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLT 284
STG Y RL ++F L+R+I +F+LQTY P+ L+ +LSWVSFWI+ A ARV LGITTVLT
Sbjct: 264 STGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLT 323
Query: 285 MTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQK 339
M+TI T + ++P++ Y+KA+D+YL FVFVF+++LEYA VNY+ + + QK
Sbjct: 324 MSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQERKEQK 378
Score = 42.7 bits (99), Expect = 8e-04
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 406 LSTLEIKNEMATSEAV---MGLGDPRSTMLA--YDASSIQYRKAGLPRHSF--GRNALER 458
L+T++ + E E + GL PR+ ML Y + +P + R ++
Sbjct: 368 LTTVQERKEQKLREKLPCTSGLPPPRTAMLDGNYSDGEVNDLDNYMPENGEKPDRMMVQL 427
Query: 459 HVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYW 507
+A ++S +R+ SQ + D +AID++SRI FP + FN++YW
Sbjct: 428 TLASERSSPQRK-SQRSSYVSMRIDTHAIDKYSRIIFPAAYILFNLIYW 475
>gi|7657106 gamma-aminobutyric acid (GABA) A receptor, pi [Homo
sapiens]
Length = 440
Score = 299 bits (766), Expect = 4e-81
Identities = 148/289 (51%), Positives = 202/289 (69%), Gaps = 2/289 (0%)
Query: 41 DRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNV 100
+ L GY+ LRP+FGG PV + + +DIASI +SE NMDYT T+Y +Q W D+RL +
Sbjct: 42 ENLTAGYNKFLRPNFGGEPVQIALTLDIASISSISESNMDYTATIYLRQRWMDQRLVFEG 101
Query: 101 IPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAAC 160
+ TLD R+ + LWVPDTY + KKSF+H VTV NR+IRL +GTVLY LRITTT AC
Sbjct: 102 NK-SFTLDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSNGTVLYALRITTTVAC 160
Query: 161 MMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITK 220
MDL +YP+D Q C L++ES+GY +D+EF W +++V G+ + L Q++I Y +
Sbjct: 161 NMDLSKYPMDTQTCKLQLESWGYDGNDVEFTWLRGNDSVRGLEHLRLAQYTIERYFTLVT 220
Query: 221 KVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGIT 280
+ TG+Y RL L F+L+RN+ YFIL+TY+PS + +LSWVSFWI+ D+ AR +G+T
Sbjct: 221 RSQQETGNYTRLVLQFELRRNVLYFILETYVPSTFLVVLSWVSFWISLDSVPARTCIGVT 280
Query: 281 TVLTMTTINTHLRETLPKIP-YVKAIDMYLMGCFVFVFMALLEYALVNY 328
TVL+MTT+ R +LP ++KAID+YL CF FVF ALLEYA+ +Y
Sbjct: 281 TVLSMTTLMIGSRTSLPNTNCFIKAIDVYLGICFSFVFGALLEYAVAHY 329
Score = 35.0 bits (79), Expect = 0.16
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYYV 511
+D +S++ FP++F N+ YW YY+
Sbjct: 414 VDHYSKLLFPLIFMLANVFYWAYYM 438
>gi|153266866 gamma-aminobutyric acid (GABA) receptor, rho 2
precursor [Homo sapiens]
Length = 490
Score = 295 bits (756), Expect = 5e-80
Identities = 140/300 (46%), Positives = 210/300 (70%), Gaps = 3/300 (1%)
Query: 47 YDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIP-LNL 105
+D +RP FGGP + VG+++ + S+D +SEV+MD+T+T+Y + W+D+RL+++ ++
Sbjct: 89 HDFSMRPAFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWKDERLAFSSASNKSM 148
Query: 106 TLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLR 165
T D R+ ++WVPD +F++ K+SF H T N M+R+ PDG VLY +RIT TA C MD
Sbjct: 149 TFDGRLVKKIWVPDVFFVHSKRSFTHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFS 208
Query: 166 RYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFS 225
+PLD Q C+LE+ESY YT +D+ YW+ D ++ KI L QF I + ++ +S
Sbjct: 209 HFPLDSQTCSLELESYAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQKFHTTSRLAFYS 268
Query: 226 -TGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLT 284
TG Y RL ++F L+R+I +F+LQTY P+ L+ +LSWVSFWI+ A ARV+LGITTVLT
Sbjct: 269 STGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLT 328
Query: 285 MTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEK 344
MTTI T + ++P++ YVKA+D+YL FVFVF+++LEYA VNY+ + ++++K EK
Sbjct: 329 MTTIITGVNASMPRVSYVKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQ-ERKERKLREK 387
Score = 38.1 bits (87), Expect = 0.019
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 408 TLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRL 467
T+ + + SEA G PRS +L + R+ + H G + E + A+KK L
Sbjct: 399 TMMLDGSYSESEANSLAGYPRSHILTEEE-----RQDKIVVH-LGLSG-EANAARKKGLL 451
Query: 468 RRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYW 507
+ + + +AID++SR+ FP + FFN++YW
Sbjct: 452 KGQTG-----FRIFQNTHAIDKYSRLIFPASYIFFNLIYW 486
>gi|157743288 gamma-aminobutyric acid (GABA) receptor, rho 3 [Homo
sapiens]
Length = 467
Score = 292 bits (747), Expect = 6e-79
Identities = 135/284 (47%), Positives = 203/284 (71%), Gaps = 2/284 (0%)
Query: 48 DIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSY-NVIPLNLT 106
D +RP FGG PV VG+++ + SID +SE NMD+T+T Y + W+D+RLS+ + ++T
Sbjct: 71 DFAMRPGFGGSPVPVGIDVHVESIDSISETNMDFTMTFYLRHYWKDERLSFPSTANKSMT 130
Query: 107 LDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRR 166
D+R+ ++WVPD +F++ K+SF+H T++N M+R+HPDG VL LRIT +A C MD R
Sbjct: 131 FDHRLTRKIWVPDIFFVHSKRSFIHDTTMENIMLRVHPDGNVLLSLRITVSAMCFMDFSR 190
Query: 167 YPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVF-S 225
+PLD QNC+LE+ESY Y DD+ YW+ + ++ + L QF I D+ + + S
Sbjct: 191 FPLDTQNCSLELESYAYNEDDLMLYWKHGNKSLNTEEHMSLSQFFIEDFSASSGLAFYSS 250
Query: 226 TGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTM 285
TG Y RL ++F L+R++ +F+LQTY P+IL+ +LSWVSFWI+ A ARV+LGITTVLTM
Sbjct: 251 TGWYNRLFINFVLRRHVFFFVLQTYFPAILMVMLSWVSFWIDRRAVPARVSLGITTVLTM 310
Query: 286 TTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYI 329
+TI T + ++P++ Y+KA+D+YL +FVF++++EYA VNY+
Sbjct: 311 STIITAVSASMPQVSYLKAVDVYLWVSSLFVFLSVIEYAAVNYL 354
Score = 37.0 bits (84), Expect = 0.043
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 481 LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 511
L + + ID +SRI FP+V+ FN+ YW YV
Sbjct: 437 LENNHVIDTYSRILFPIVYILFNLFYWGVYV 467
>gi|110347441 glycine receptor, alpha 3 isoform a [Homo sapiens]
Length = 464
Score = 285 bits (730), Expect = 5e-77
Identities = 176/511 (34%), Positives = 258/511 (50%), Gaps = 83/511 (16%)
Query: 10 FGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLK------GYDIRLRPDFGGPPVAVG 63
F W L+++ V + + + S D L K GYD R+RP+F GPPV V
Sbjct: 14 FYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVT 73
Query: 64 MNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYF 122
NI I S ++E MDY + ++ +Q W D RL+Y+ P + L LD + D +W PD +F
Sbjct: 74 CNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFF 133
Query: 123 LNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYG 182
N+K + H VT N+++R+ +G VLY +R+T T +C MDL+ +P+D Q C +++ES+G
Sbjct: 134 ANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFG 193
Query: 183 YTTDDIEFYWRGDDNAVTGVTKIELPQFSIV---DYKLITKKVVFSTGSYPRLSLSFKLK 239
YT +D+ F W+ D+ V + LPQF + D + TK ++TG + + + F L+
Sbjct: 194 YTMNDLIFEWQ-DEAPVQVAEGLTLPQFLLKEEKDLRYCTKH--YNTGKFTCIEVRFHLE 250
Query: 240 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI 299
R +GY+++Q Y+PS+LI ILSWVSFWIN DA+ ARVALGITTVLTMTT ++ R +LPK+
Sbjct: 251 RQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKV 310
Query: 300 PYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK 359
YVKAID+++ C +FVF ALLEYA VN++ RQ K + K +
Sbjct: 311 SYVKAIDIWMAVCLLFVFSALLEYAAVNFV------SRQHKELLRFRRKRKNKTEAFALE 364
Query: 360 IFYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSE 419
FY+ ++ R + + F+ Y M P L+ K+ M
Sbjct: 365 KFYR---------------FSDMDDEVRESRFSFTAYGMGP-------CLQAKDGMTPK- 401
Query: 420 AVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIP 479
P + S + RK + R
Sbjct: 402 ------GPNHPVQVMPKSPDEMRKVFIDR------------------------------- 424
Query: 480 DLTDVNAIDRWSRIFFPVVFSFFNIVYWLYY 510
ID SR FP+ F FNI YW+ Y
Sbjct: 425 ----AKKIDTISRACFPLAFLIFNIFYWVIY 451
>gi|38788135 gamma-aminobutyric acid A receptor, gamma 2 isoform 2
precursor [Homo sapiens]
Length = 467
Score = 282 bits (721), Expect = 6e-76
Identities = 134/305 (43%), Positives = 196/305 (64%)
Query: 40 VDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
++ LL+GYD +LRPD G P + ++ + SI V+ +NM+YT+ ++F Q W D+RL +N
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 129
Query: 100 VIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAA 159
L L++ + ++W+PDT+F N KK+ H +T NRM+R+ DG VLY LR+T A
Sbjct: 130 STIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE 189
Query: 160 CMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLIT 219
C + L +P+DE +C LE SYGY ++I + W+ V L QFS V + T
Sbjct: 190 CQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGLRNTT 249
Query: 220 KKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGI 279
+ V ++G Y +S+ F L R +GYF +QTY+P LI +LSWVSFWIN DA AR +LGI
Sbjct: 250 EVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGI 309
Query: 280 TTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQK 339
TTVLTMTT++T R++LPK+ YV A+D+++ CF+FVF AL+EY ++Y R P + K
Sbjct: 310 TTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDK 369
Query: 340 KAAEK 344
+K
Sbjct: 370 DKKKK 374
Score = 37.4 bits (85), Expect = 0.033
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYYV 511
+D ++RIFFP F FN+VYW+ Y+
Sbjct: 441 MDSYARIFFPTAFCLFNLVYWVSYL 465
>gi|38788155 gamma-aminobutyric acid A receptor, gamma 2 isoform 1
precursor [Homo sapiens]
Length = 475
Score = 282 bits (721), Expect = 6e-76
Identities = 134/305 (43%), Positives = 196/305 (64%)
Query: 40 VDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
++ LL+GYD +LRPD G P + ++ + SI V+ +NM+YT+ ++F Q W D+RL +N
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 129
Query: 100 VIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAA 159
L L++ + ++W+PDT+F N KK+ H +T NRM+R+ DG VLY LR+T A
Sbjct: 130 STIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE 189
Query: 160 CMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLIT 219
C + L +P+DE +C LE SYGY ++I + W+ V L QFS V + T
Sbjct: 190 CQLQLHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGLRNTT 249
Query: 220 KKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGI 279
+ V ++G Y +S+ F L R +GYF +QTY+P LI +LSWVSFWIN DA AR +LGI
Sbjct: 250 EVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGI 309
Query: 280 TTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQK 339
TTVLTMTT++T R++LPK+ YV A+D+++ CF+FVF AL+EY ++Y R P + K
Sbjct: 310 TTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDK 369
Query: 340 KAAEK 344
+K
Sbjct: 370 DKKKK 374
Score = 37.4 bits (85), Expect = 0.033
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYYV 511
+D ++RIFFP F FN+VYW+ Y+
Sbjct: 449 MDSYARIFFPTAFCLFNLVYWVSYL 473
>gi|169646723 glycine receptor, alpha 2 isoform A [Homo sapiens]
Length = 452
Score = 282 bits (721), Expect = 6e-76
Identities = 148/329 (44%), Positives = 215/329 (65%), Gaps = 15/329 (4%)
Query: 24 AQSVNDPSNMSLVKETVDRLL---KGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMD 80
++S PS + +D+L+ GYD R+RP+F GPPV V NI I S V+E MD
Sbjct: 32 SRSGKQPSQTLSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMD 91
Query: 81 YTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRM 139
Y + ++ +Q W D RL+Y+ P + L LD + D +W PD +F N+K + H VT N++
Sbjct: 92 YRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKL 151
Query: 140 IRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAV 199
+R+ +G VLY +R+T T +C MDL+ +P+D Q CT+++ES+GYT +D+ F W D V
Sbjct: 152 LRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSD-GPV 210
Query: 200 TGVTKIELPQFSIVDYKLI---TKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILI 256
+ LPQF + + K + TK ++TG + + + F L+R +GY+++Q Y+PS+LI
Sbjct: 211 QVAEGLTLPQFILKEEKELGYCTKH--YNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLI 268
Query: 257 TILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFV 316
ILSWVSFWIN DA+ ARVALGITTVLTMTT ++ R +LPK+ YVKAID+++ C +FV
Sbjct: 269 VILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFV 328
Query: 317 FMALLEYALVNYIF-----FGRGPQRQKK 340
F ALLEYA VN++ F R +RQK+
Sbjct: 329 FAALLEYAAVNFVSRQHKEFLRLRRRQKR 357
Score = 31.6 bits (70), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYY 510
ID SR FP+ F FNI YW+ Y
Sbjct: 418 IDTISRAAFPLAFLIFNIFYWITY 441
>gi|4504021 glycine receptor, alpha 2 isoform A [Homo sapiens]
Length = 452
Score = 282 bits (721), Expect = 6e-76
Identities = 148/329 (44%), Positives = 215/329 (65%), Gaps = 15/329 (4%)
Query: 24 AQSVNDPSNMSLVKETVDRLL---KGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMD 80
++S PS + +D+L+ GYD R+RP+F GPPV V NI I S V+E MD
Sbjct: 32 SRSGKQPSQTLSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMD 91
Query: 81 YTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRM 139
Y + ++ +Q W D RL+Y+ P + L LD + D +W PD +F N+K + H VT N++
Sbjct: 92 YRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKL 151
Query: 140 IRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAV 199
+R+ +G VLY +R+T T +C MDL+ +P+D Q CT+++ES+GYT +D+ F W D V
Sbjct: 152 LRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSD-GPV 210
Query: 200 TGVTKIELPQFSIVDYKLI---TKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILI 256
+ LPQF + + K + TK ++TG + + + F L+R +GY+++Q Y+PS+LI
Sbjct: 211 QVAEGLTLPQFILKEEKELGYCTKH--YNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLI 268
Query: 257 TILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFV 316
ILSWVSFWIN DA+ ARVALGITTVLTMTT ++ R +LPK+ YVKAID+++ C +FV
Sbjct: 269 VILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFV 328
Query: 317 FMALLEYALVNYIF-----FGRGPQRQKK 340
F ALLEYA VN++ F R +RQK+
Sbjct: 329 FAALLEYAAVNFVSRQHKEFLRLRRRQKR 357
Score = 31.6 bits (70), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYY 510
ID SR FP+ F FNI YW+ Y
Sbjct: 418 IDTISRAAFPLAFLIFNIFYWITY 441
>gi|169646728 glycine receptor, alpha 2 isoform B [Homo sapiens]
Length = 452
Score = 281 bits (720), Expect = 8e-76
Identities = 147/329 (44%), Positives = 215/329 (65%), Gaps = 15/329 (4%)
Query: 24 AQSVNDPSNMSLVKETVDRLL---KGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMD 80
++S PS + +D+L+ GYD R+RP+F GPPV V NI I S ++E MD
Sbjct: 32 SRSGKQPSQTLSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMD 91
Query: 81 YTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRM 139
Y + ++ +Q W D RL+Y+ P + L LD + D +W PD +F N+K + H VT N++
Sbjct: 92 YRVNIFLRQQWNDSRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKL 151
Query: 140 IRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAV 199
+R+ +G VLY +R+T T +C MDL+ +P+D Q CT+++ES+GYT +D+ F W D V
Sbjct: 152 LRISKNGKVLYSIRLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSD-GPV 210
Query: 200 TGVTKIELPQFSIVDYKLI---TKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILI 256
+ LPQF + + K + TK ++TG + + + F L+R +GY+++Q Y+PS+LI
Sbjct: 211 QVAEGLTLPQFILKEEKELGYCTKH--YNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLI 268
Query: 257 TILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFV 316
ILSWVSFWIN DA+ ARVALGITTVLTMTT ++ R +LPK+ YVKAID+++ C +FV
Sbjct: 269 VILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFV 328
Query: 317 FMALLEYALVNYIF-----FGRGPQRQKK 340
F ALLEYA VN++ F R +RQK+
Sbjct: 329 FAALLEYAAVNFVSRQHKEFLRLRRRQKR 357
Score = 31.6 bits (70), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYY 510
ID SR FP+ F FNI YW+ Y
Sbjct: 418 IDTISRAAFPLAFLIFNIFYWITY 441
>gi|110347433 glycine receptor, alpha 3 isoform b [Homo sapiens]
Length = 449
Score = 281 bits (718), Expect = 1e-75
Identities = 144/330 (43%), Positives = 211/330 (63%), Gaps = 13/330 (3%)
Query: 10 FGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLK------GYDIRLRPDFGGPPVAVG 63
F W L+++ V + + + S D L K GYD R+RP+F GPPV V
Sbjct: 14 FYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVT 73
Query: 64 MNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYF 122
NI I S ++E MDY + ++ +Q W D RL+Y+ P + L LD + D +W PD +F
Sbjct: 74 CNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFF 133
Query: 123 LNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYG 182
N+K + H VT N+++R+ +G VLY +R+T T +C MDL+ +P+D Q C +++ES+G
Sbjct: 134 ANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFG 193
Query: 183 YTTDDIEFYWRGDDNAVTGVTKIELPQFSIV---DYKLITKKVVFSTGSYPRLSLSFKLK 239
YT +D+ F W+ D+ V + LPQF + D + TK ++TG + + + F L+
Sbjct: 194 YTMNDLIFEWQ-DEAPVQVAEGLTLPQFLLKEEKDLRYCTKH--YNTGKFTCIEVRFHLE 250
Query: 240 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI 299
R +GY+++Q Y+PS+LI ILSWVSFWIN DA+ ARVALGITTVLTMTT ++ R +LPK+
Sbjct: 251 RQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKV 310
Query: 300 PYVKAIDMYLMGCFVFVFMALLEYALVNYI 329
YVKAID+++ C +FVF ALLEYA VN++
Sbjct: 311 SYVKAIDIWMAVCLLFVFSALLEYAAVNFV 340
Score = 31.6 bits (70), Expect = 1.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYY 510
ID SR FP+ F FNI YW+ Y
Sbjct: 413 IDTISRACFPLAFLIFNIFYWVIY 436
>gi|225903367 glycine receptor, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 457
Score = 280 bits (717), Expect = 2e-75
Identities = 141/313 (45%), Positives = 204/313 (65%), Gaps = 7/313 (2%)
Query: 21 AVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMD 80
A A+S P + S + + GYD R+RP+F GPPV V NI I S ++E MD
Sbjct: 26 AEAARSAPKPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVSCNIFINSFGSIAETTMD 85
Query: 81 YTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRM 139
Y + ++ +Q W D RL+YN P + L LD + D +W PD +F N+K + H +T N++
Sbjct: 86 YRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKL 145
Query: 140 IRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAV 199
+R+ +G VLY +RIT T AC MDL+ +P+D Q C +++ES+GYT +D+ F W+ + AV
Sbjct: 146 LRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQ-EQGAV 204
Query: 200 TGVTKIELPQFSIV---DYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILI 256
+ LPQF + D + TK ++TG + + F L+R +GY+++Q Y+PS+LI
Sbjct: 205 QVADGLTLPQFILKEEKDLRYCTKH--YNTGKFTCIEARFHLERQMGYYLIQMYIPSLLI 262
Query: 257 TILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFV 316
ILSW+SFWIN DA+ ARV LGITTVLTMTT ++ R +LPK+ YVKAID+++ C +FV
Sbjct: 263 VILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFV 322
Query: 317 FMALLEYALVNYI 329
F ALLEYA VN++
Sbjct: 323 FSALLEYAAVNFV 335
Score = 33.5 bits (75), Expect = 0.47
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYY 510
ID+ SRI FP+ F FN+ YW+ Y
Sbjct: 423 IDKISRIGFPMAFLIFNMFYWIIY 446
>gi|119372310 glycine receptor, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 449
Score = 280 bits (717), Expect = 2e-75
Identities = 141/313 (45%), Positives = 204/313 (65%), Gaps = 7/313 (2%)
Query: 21 AVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMD 80
A A+S P + S + + GYD R+RP+F GPPV V NI I S ++E MD
Sbjct: 26 AEAARSAPKPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVSCNIFINSFGSIAETTMD 85
Query: 81 YTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRM 139
Y + ++ +Q W D RL+YN P + L LD + D +W PD +F N+K + H +T N++
Sbjct: 86 YRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKL 145
Query: 140 IRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAV 199
+R+ +G VLY +RIT T AC MDL+ +P+D Q C +++ES+GYT +D+ F W+ + AV
Sbjct: 146 LRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQ-EQGAV 204
Query: 200 TGVTKIELPQFSIV---DYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILI 256
+ LPQF + D + TK ++TG + + F L+R +GY+++Q Y+PS+LI
Sbjct: 205 QVADGLTLPQFILKEEKDLRYCTKH--YNTGKFTCIEARFHLERQMGYYLIQMYIPSLLI 262
Query: 257 TILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFV 316
ILSW+SFWIN DA+ ARV LGITTVLTMTT ++ R +LPK+ YVKAID+++ C +FV
Sbjct: 263 VILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFV 322
Query: 317 FMALLEYALVNYI 329
F ALLEYA VN++
Sbjct: 323 FSALLEYAAVNFV 335
Score = 33.5 bits (75), Expect = 0.47
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYY 510
ID+ SRI FP+ F FN+ YW+ Y
Sbjct: 415 IDKISRIGFPMAFLIFNMFYWIIY 438
>gi|218156328 glycine receptor, alpha 4 precursor [Homo sapiens]
Length = 417
Score = 280 bits (716), Expect = 2e-75
Identities = 145/331 (43%), Positives = 210/331 (63%), Gaps = 15/331 (4%)
Query: 12 IWSFP---LIIAAVCAQSVNDPSNMSLVKETVDRLLK------GYDIRLRPDFGGPPVAV 62
+W+ P L+ A+ + V + S D L K GYD R+RP+F GPPV V
Sbjct: 14 LWTLPGQVLLRVALAKEEVKSGTKGSQPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNV 73
Query: 63 GMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTY 121
NI I S +++ MDY + ++ +Q W D RLSY P + L LD + D +W PD +
Sbjct: 74 TCNIFINSFSSITKTTMDYRVNVFLRQQWNDPRLSYREYPDDSLDLDPSMLDSIWKPDLF 133
Query: 122 FLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESY 181
F N+K + H VT N+++R+ +G VLY +R+T +C+MDL+ +P+D Q CT+++ES+
Sbjct: 134 FANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCLMDLKNFPMDIQTCTMQLESF 193
Query: 182 GYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLI---TKKVVFSTGSYPRLSLSFKL 238
GYT D+ F W D AV + LPQF + D K + TK ++TG + + + F L
Sbjct: 194 GYTMKDLVFEWLEDAPAVQVAEGLTLPQFILRDEKDLGCCTKH--YNTGKFTCIEVKFHL 251
Query: 239 KRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPK 298
+R +GY+++Q Y+PS+LI ILSWVSFWIN DA+ ARV LGITTVLTMTT ++ R +LPK
Sbjct: 252 ERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPK 311
Query: 299 IPYVKAIDMYLMGCFVFVFMALLEYALVNYI 329
+ YVKAID+++ C +FVF ALLEYA +N++
Sbjct: 312 VSYVKAIDIWMAVCLLFVFAALLEYAAINFV 342
>gi|31742490 gamma-aminobutyric acid A receptor, gamma 1 precursor
[Homo sapiens]
Length = 465
Score = 270 bits (689), Expect = 3e-72
Identities = 131/314 (41%), Positives = 196/314 (62%), Gaps = 3/314 (0%)
Query: 36 VKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKR 95
+ + ++ LL+GYD +LRPD G P + ++ + SI V +NM+YT+ + F Q W D R
Sbjct: 64 ITQILNSLLQGYDNKLRPDIGVRPTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSR 123
Query: 96 LSYNVIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRIT 155
L +N L L++ + ++W+PDT+F N +KS H +T NR++R+ DG VLY LR+T
Sbjct: 124 LKFNSTMKVLMLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRIWNDGRVLYTLRLT 183
Query: 156 TTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDY 215
A C + L +P+DE +C LE SYGY ++IE+ W+ V L QF+ V
Sbjct: 184 INAECYLQLHNFPMDEHSCPLEFSSYGYPKNEIEYKWKKPSVEVADPKYWRLYQFAFVGL 243
Query: 216 KLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARV 275
+ T+ +G Y +++ F L R +GYF +QTY+P IL +LSWVSFWIN DA AR
Sbjct: 244 RNSTEITHTISGDYVIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVPART 303
Query: 276 ALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFF---G 332
+LGITTVLTMTT++T R++LPK+ YV A+D+++ CF+FVF AL+EY ++Y G
Sbjct: 304 SLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFTSNQKG 363
Query: 333 RGPQRQKKAAEKAA 346
+ + +K KA+
Sbjct: 364 KTATKDRKLKNKAS 377
Score = 40.0 bits (92), Expect = 0.005
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYYV 511
ID +SRIFFP F+ FN+VYW+ Y+
Sbjct: 439 IDSYSRIFFPTAFALFNLVYWVGYL 463
>gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precursor
[Homo sapiens]
Length = 554
Score = 270 bits (689), Expect = 3e-72
Identities = 169/511 (33%), Positives = 259/511 (50%), Gaps = 57/511 (11%)
Query: 40 VDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
+D LL GYD RLRP FGGP V +I + S VS+V M+YT+ ++F+Q W DKRL Y+
Sbjct: 52 LDSLLDGYDNRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWIDKRLKYD 111
Query: 100 VIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAA 159
L L+N + ++W PDT+F N KKS H +T N++ R+ +GT+LY +R+T +A
Sbjct: 112 GPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNKLFRIMRNGTILYTMRLTISAE 171
Query: 160 CMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTK--IELPQFSIVDYKL 217
C M L +P+D C L+ SY Y ++ + W V K L Q+ ++ +
Sbjct: 172 CPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVPKESSSLVQYDLIGQTV 231
Query: 218 ITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVAL 277
++ + TG Y +++ F L+R +GYF++QTY+P I+ ILS VSFWIN ++ AR
Sbjct: 232 SSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVF 291
Query: 278 GITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQR 337
GITTVLTMTT++ R +LPK+ Y A+D ++ CF FVF AL+E+A VNY +
Sbjct: 292 GITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYF----TNIQ 347
Query: 338 QKKAAEKAASANNEKMRLDVNKIFYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYT 397
+KA K + E V + + + T NL+ +RT S
Sbjct: 348 MEKAKRKTSKPPQEVPAAPVQREKHPEAPLQNT--------NANLNMRKRTNALVHS--- 396
Query: 398 MDPHENILLSTLEIKNEMATSEAVM---GLGDPRSTMLAY-------------------- 434
E+ + + E+ N + S V+ G PRS + +
Sbjct: 397 ----ESDVGNRTEVGNHSSKSSTVVQESSKGTPRSYLASSPNPFSRANAAETISAARALP 452
Query: 435 DASSIQYRKAGLPRHSFGRNALERHV-AQKKSRLRRRASQLKIT------------IPDL 481
AS R +PR + +A RHV + R++ + + T P
Sbjct: 453 SASPTSIRTGYMPRKASVGSASTRHVFGSRLQRIKTTVNTIGATGKLSATPPPSAPPPSG 512
Query: 482 TDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
+ + ID+++RI FPV F FN+VYW+ Y++
Sbjct: 513 SGTSKIDKYARILFPVTFGAFNMVYWVVYLS 543
>gi|110347416 gamma-aminobutyric acid (GABA) A receptor, gamma 3
[Homo sapiens]
Length = 467
Score = 268 bits (685), Expect = 9e-72
Identities = 128/301 (42%), Positives = 190/301 (63%)
Query: 40 VDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
+++LL+ YD +LRPD G P + ++I + SI VS +NM+Y + ++F Q W D RL +N
Sbjct: 51 LNKLLREYDKKLRPDIGIKPTVIDVDIYVNSIGPVSSINMEYQIDIFFAQTWTDSRLRFN 110
Query: 100 VIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAA 159
LTL++ + +W+PDT F N K + H +T N+++R+ DG +LY LR+T A
Sbjct: 111 STMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAE 170
Query: 160 CMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLIT 219
C + L +P+DE +C L SYGY +++ + WR + L QF + + T
Sbjct: 171 CQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTT 230
Query: 220 KKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGI 279
+ V S G Y +++ F+L R +GYF +QTY+P IL +LSWVSFWI DA+ AR ALGI
Sbjct: 231 EIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGI 290
Query: 280 TTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQK 339
TTVLTMTT++T R++LP++ YV A+D+++ CF+FVF AL+EYA +NY R P K
Sbjct: 291 TTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYSSCRKPTTTK 350
Query: 340 K 340
K
Sbjct: 351 K 351
Score = 38.9 bits (89), Expect = 0.011
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 483 DVNAIDRWSRIFFPVVFSFFNIVYWLYYV 511
D+ +D +SR+FFP F FN+VYW+ Y+
Sbjct: 437 DILELDSYSRVFFPTSFLLFNLVYWVGYL 465
>gi|167000817 gamma-aminobutyric acid A receptor, alpha 2 [Homo
sapiens]
Length = 451
Score = 262 bits (670), Expect = 5e-70
Identities = 132/328 (40%), Positives = 199/328 (60%), Gaps = 6/328 (1%)
Query: 10 FGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIA 69
F +W P + Q +N+++ +DRLL GYD RLRP G V NI +
Sbjct: 17 FLVWD-PARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPGLGDSITEVFTNIYVT 75
Query: 70 SIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYFLNDKKS 128
S VS+ +M+YT+ ++F+Q W+D+RL + P+N L L+N +A ++W PDT+F N KKS
Sbjct: 76 SFGPVSDTDMEYTIDVFFRQKWKDERLKFKG-PMNILRLNNLMASKIWTPDTFFHNGKKS 134
Query: 129 FVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDI 188
H +T+ N+++R+ DGT+LY +R+T A C M L +P+D +C L+ SY YTT ++
Sbjct: 135 VAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEV 194
Query: 189 EFYW--RGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFI 246
+ W D+ L Q+ ++ + + + STG Y ++ F LKR IGYF+
Sbjct: 195 TYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFV 254
Query: 247 LQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAID 306
+QTY+P I+ ILS VSFW+N ++ AR G+TTVLTMTT++ R +LPK+ Y A+D
Sbjct: 255 IQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMD 314
Query: 307 MYLMGCFVFVFMALLEYALVNYIFFGRG 334
++ C+ FVF AL+E+A VNY F RG
Sbjct: 315 WFIAVCYAFVFSALIEFATVNY-FTKRG 341
Score = 42.7 bits (99), Expect = 8e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 484 VNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
V+ IDR SRI FPV+F FN+VYW Y+N
Sbjct: 414 VSKIDRMSRIVFPVLFGTFNLVYWATYLN 442
>gi|167000751 gamma-aminobutyric acid A receptor, alpha 2 precursor
[Homo sapiens]
Length = 451
Score = 262 bits (670), Expect = 5e-70
Identities = 132/328 (40%), Positives = 199/328 (60%), Gaps = 6/328 (1%)
Query: 10 FGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIA 69
F +W P + Q +N+++ +DRLL GYD RLRP G V NI +
Sbjct: 17 FLVWD-PARLVLANIQEDEAKNNITIFTRILDRLLDGYDNRLRPGLGDSITEVFTNIYVT 75
Query: 70 SIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLN-LTLDNRVADQLWVPDTYFLNDKKS 128
S VS+ +M+YT+ ++F+Q W+D+RL + P+N L L+N +A ++W PDT+F N KKS
Sbjct: 76 SFGPVSDTDMEYTIDVFFRQKWKDERLKFKG-PMNILRLNNLMASKIWTPDTFFHNGKKS 134
Query: 129 FVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDI 188
H +T+ N+++R+ DGT+LY +R+T A C M L +P+D +C L+ SY YTT ++
Sbjct: 135 VAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSCPLKFGSYAYTTSEV 194
Query: 189 EFYW--RGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFI 246
+ W D+ L Q+ ++ + + + STG Y ++ F LKR IGYF+
Sbjct: 195 TYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFHLKRKIGYFV 254
Query: 247 LQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAID 306
+QTY+P I+ ILS VSFW+N ++ AR G+TTVLTMTT++ R +LPK+ Y A+D
Sbjct: 255 IQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMD 314
Query: 307 MYLMGCFVFVFMALLEYALVNYIFFGRG 334
++ C+ FVF AL+E+A VNY F RG
Sbjct: 315 WFIAVCYAFVFSALIEFATVNY-FTKRG 341
Score = 42.7 bits (99), Expect = 8e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 484 VNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
V+ IDR SRI FPV+F FN+VYW Y+N
Sbjct: 414 VSKIDRMSRIVFPVLFGTFNLVYWATYLN 442
>gi|189083762 gamma-aminobutyric acid A receptor, gamma 2 isoform 3
precursor [Homo sapiens]
Length = 515
Score = 260 bits (665), Expect = 2e-69
Identities = 133/345 (38%), Positives = 196/345 (56%), Gaps = 40/345 (11%)
Query: 40 VDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYN 99
++ LL+GYD +LRPD G P + ++ + SI V+ +NM+YT+ ++F Q W D+RL +N
Sbjct: 70 LNNLLEGYDNKLRPDIGVKPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFN 129
Query: 100 VIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAA 159
L L++ + ++W+PDT+F N KK+ H +T NRM+R+ DG VLY LR+T A
Sbjct: 130 STIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAE 189
Query: 160 CMMDLRRYPLDEQNCTLEIESY-------------------------------------- 181
C + L +P+DE +C LE S+
Sbjct: 190 CQLQLHNFPMDEHSCPLEFSSWSRSIAQAGMCSGVISAHYSLRFWGSTDPPTLASRVAGI 249
Query: 182 --GYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLK 239
GY ++I + W+ V L QFS V + T+ V ++G Y +S+ F L
Sbjct: 250 SDGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLS 309
Query: 240 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI 299
R +GYF +QTY+P LI +LSWVSFWIN DA AR +LGITTVLTMTT++T R++LPK+
Sbjct: 310 RRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKV 369
Query: 300 PYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEK 344
YV A+D+++ CF+FVF AL+EY ++Y R P + K +K
Sbjct: 370 SYVTAMDLFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDKDKKKK 414
Score = 37.4 bits (85), Expect = 0.033
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 487 IDRWSRIFFPVVFSFFNIVYWLYYV 511
+D ++RIFFP F FN+VYW+ Y+
Sbjct: 489 MDSYARIFFPTAFCLFNLVYWVSYL 513
>gi|189083734 gamma-aminobutyric acid (GABA) A receptor, alpha 1
precursor [Homo sapiens]
Length = 456
Score = 259 bits (663), Expect = 3e-69
Identities = 135/357 (37%), Positives = 209/357 (58%), Gaps = 19/357 (5%)
Query: 12 IWSFPLIIAAVCAQSVNDPS-------NMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGM 64
+W++ L+++ + +S PS N ++ +DRLL GYD RLRP G V
Sbjct: 11 LWAWILLLSTLTGRSYGQPSLQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKT 70
Query: 65 NIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLN 124
+I + S VS+ +M+YT+ ++F+Q+W+D+RL + L L+N +A ++W PDT+F N
Sbjct: 71 DIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHN 130
Query: 125 DKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYT 184
KKS H +T+ N+++R+ DGT+LY +R+T A C M L +P+D C L+ SY YT
Sbjct: 131 GKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYT 190
Query: 185 TDDIEFYWRGDD--NAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKRNI 242
++ + W + + V L Q+ ++ + + V STG Y ++ F LKR I
Sbjct: 191 RAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKI 250
Query: 243 GYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYV 302
GYF++QTY+P I+ ILS VSFW+N ++ AR G+TTVLTMTT++ R +LPK+ Y
Sbjct: 251 GYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYA 310
Query: 303 KAIDMYLMGCFVFVFMALLEYALVNYIFFGRG---------PQRQKKAAEKAASANN 350
A+D ++ C+ FVF AL+E+A VNY F RG P++ KK + NN
Sbjct: 311 TAMDWFIAVCYAFVFSALIEFATVNY-FTKRGYAWDGKSVVPEKPKKVKDPLIKKNN 366
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 484 VNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
V+ IDR SRI FP++F FN+VYW Y+N
Sbjct: 416 VSKIDRLSRIAFPLLFGIFNLVYWATYLN 444
>gi|189083732 gamma-aminobutyric acid (GABA) A receptor, alpha 1
precursor [Homo sapiens]
Length = 456
Score = 259 bits (663), Expect = 3e-69
Identities = 135/357 (37%), Positives = 209/357 (58%), Gaps = 19/357 (5%)
Query: 12 IWSFPLIIAAVCAQSVNDPS-------NMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGM 64
+W++ L+++ + +S PS N ++ +DRLL GYD RLRP G V
Sbjct: 11 LWAWILLLSTLTGRSYGQPSLQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKT 70
Query: 65 NIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLN 124
+I + S VS+ +M+YT+ ++F+Q+W+D+RL + L L+N +A ++W PDT+F N
Sbjct: 71 DIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHN 130
Query: 125 DKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYT 184
KKS H +T+ N+++R+ DGT+LY +R+T A C M L +P+D C L+ SY YT
Sbjct: 131 GKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYT 190
Query: 185 TDDIEFYWRGDD--NAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKRNI 242
++ + W + + V L Q+ ++ + + V STG Y ++ F LKR I
Sbjct: 191 RAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKI 250
Query: 243 GYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYV 302
GYF++QTY+P I+ ILS VSFW+N ++ AR G+TTVLTMTT++ R +LPK+ Y
Sbjct: 251 GYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYA 310
Query: 303 KAIDMYLMGCFVFVFMALLEYALVNYIFFGRG---------PQRQKKAAEKAASANN 350
A+D ++ C+ FVF AL+E+A VNY F RG P++ KK + NN
Sbjct: 311 TAMDWFIAVCYAFVFSALIEFATVNY-FTKRGYAWDGKSVVPEKPKKVKDPLIKKNN 366
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 484 VNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
V+ IDR SRI FP++F FN+VYW Y+N
Sbjct: 416 VSKIDRLSRIAFPLLFGIFNLVYWATYLN 444
>gi|189083730 gamma-aminobutyric acid (GABA) A receptor, alpha 1
precursor [Homo sapiens]
Length = 456
Score = 259 bits (663), Expect = 3e-69
Identities = 135/357 (37%), Positives = 209/357 (58%), Gaps = 19/357 (5%)
Query: 12 IWSFPLIIAAVCAQSVNDPS-------NMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGM 64
+W++ L+++ + +S PS N ++ +DRLL GYD RLRP G V
Sbjct: 11 LWAWILLLSTLTGRSYGQPSLQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKT 70
Query: 65 NIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDTYFLN 124
+I + S VS+ +M+YT+ ++F+Q+W+D+RL + L L+N +A ++W PDT+F N
Sbjct: 71 DIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHN 130
Query: 125 DKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYT 184
KKS H +T+ N+++R+ DGT+LY +R+T A C M L +P+D C L+ SY YT
Sbjct: 131 GKKSVAHNMTMPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYT 190
Query: 185 TDDIEFYWRGDD--NAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKRNI 242
++ + W + + V L Q+ ++ + + V STG Y ++ F LKR I
Sbjct: 191 RAEVVYEWTREPARSVVVAEDGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKI 250
Query: 243 GYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYV 302
GYF++QTY+P I+ ILS VSFW+N ++ AR G+TTVLTMTT++ R +LPK+ Y
Sbjct: 251 GYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYA 310
Query: 303 KAIDMYLMGCFVFVFMALLEYALVNYIFFGRG---------PQRQKKAAEKAASANN 350
A+D ++ C+ FVF AL+E+A VNY F RG P++ KK + NN
Sbjct: 311 TAMDWFIAVCYAFVFSALIEFATVNY-FTKRGYAWDGKSVVPEKPKKVKDPLIKKNN 366
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 484 VNAIDRWSRIFFPVVFSFFNIVYWLYYVN 512
V+ IDR SRI FP++F FN+VYW Y+N
Sbjct: 416 VSKIDRLSRIAFPLLFGIFNLVYWATYLN 444
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,496,582
Number of Sequences: 37866
Number of extensions: 686155
Number of successful extensions: 2106
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1925
Number of HSP's gapped (non-prelim): 112
length of query: 512
length of database: 18,247,518
effective HSP length: 107
effective length of query: 405
effective length of database: 14,195,856
effective search space: 5749321680
effective search space used: 5749321680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.