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Search of human proteins with 38016914
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38016914 SAM domain- and HD domain-containing protein 1
[Homo sapiens]
(626 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38016914 SAM domain- and HD domain-containing protein 1 [Homo... 1289 0.0
gi|126032345 sterile alpha motif domain containing 3 isoform b [... 37 0.071
gi|126032305 sterile alpha motif domain containing 3 isoform a [... 37 0.071
gi|219842266 usherin isoform B [Homo sapiens] 36 0.093
gi|219842259 usherin isoform A [Homo sapiens] 36 0.093
gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 34 0.35
gi|224451082 cytospin A [Homo sapiens] 33 1.0
gi|224451080 cytospin A [Homo sapiens] 33 1.0
gi|41393057 connector enhancer of kinase suppressor of Ras 2 [Ho... 33 1.0
gi|156119597 sterile alpha motif domain containing 12 isoform a ... 33 1.0
gi|156119595 sterile alpha motif domain containing 12 isoform b ... 33 1.0
gi|208022703 modulator of retrovirus infection [Homo sapiens] 32 1.8
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 31 3.9
gi|21389545 sterile alpha motif domain containing 8 [Homo sapiens] 31 3.9
gi|41872631 fatty acid synthase [Homo sapiens] 30 5.1
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 30 6.7
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 6.7
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 6.7
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 6.7
gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens] 30 8.7
gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo sapi... 30 8.7
gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo sapi... 30 8.7
gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo sapi... 30 8.7
gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo sapi... 30 8.7
gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo sapi... 30 8.7
gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo sapi... 30 8.7
gi|71999153 hypothetical protein LOC23334 [Homo sapiens] 30 8.7
gi|82880648 MLK-related kinase isoform 1 [Homo sapiens] 30 8.7
>gi|38016914 SAM domain- and HD domain-containing protein 1 [Homo
sapiens]
Length = 626
Score = 1289 bits (3336), Expect = 0.0
Identities = 626/626 (100%), Positives = 626/626 (100%)
Query: 1 MQRADSEQPSKRPRCDDSPRTPSNTPSAEADWSPGLELHPDYKTWGPEQVCSFLRRGGFE 60
MQRADSEQPSKRPRCDDSPRTPSNTPSAEADWSPGLELHPDYKTWGPEQVCSFLRRGGFE
Sbjct: 1 MQRADSEQPSKRPRCDDSPRTPSNTPSAEADWSPGLELHPDYKTWGPEQVCSFLRRGGFE 60
Query: 61 EPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQIHVDTMKVIND 120
EPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQIHVDTMKVIND
Sbjct: 61 EPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQIHVDTMKVIND 120
Query: 121 PIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVH 180
PIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVH
Sbjct: 121 PIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVH 180
Query: 181 ALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMM 240
ALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMM
Sbjct: 181 ALGEKQPELQISERDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMM 240
Query: 241 FEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKGRPENKSFLYEI 300
FEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKGRPENKSFLYEI
Sbjct: 241 FEHLINSNGIKPVMEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKGRPENKSFLYEI 300
Query: 301 VSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLY 360
VSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLY
Sbjct: 301 VSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGNLY 360
Query: 361 DMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYT 420
DMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYT
Sbjct: 361 DMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYT 420
Query: 421 KLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEV 480
KLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEV
Sbjct: 421 KLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPKEV 480
Query: 481 ASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPIDHVSFYCKTAPNRAIRITKNQVSQL 540
ASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPIDHVSFYCKTAPNRAIRITKNQVSQL
Sbjct: 481 ASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKNPIDHVSFYCKTAPNRAIRITKNQVSQL 540
Query: 541 LPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLITPQKKEWND 600
LPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLITPQKKEWND
Sbjct: 541 LPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLITPQKKEWND 600
Query: 601 STSVQNPTRLREASKSRVQLFKDDPM 626
STSVQNPTRLREASKSRVQLFKDDPM
Sbjct: 601 STSVQNPTRLREASKSRVQLFKDDPM 626
>gi|126032345 sterile alpha motif domain containing 3 isoform b
[Homo sapiens]
Length = 221
Score = 36.6 bits (83), Expect = 0.071
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 43 KTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLS 102
+TW EQVCS+L E L+ +E E++GA L L++ + L V +G + L+
Sbjct: 2 ETWSVEQVCSWLVEKNLGE--LVHRFQEEEVSGAALLALNDRMVQQL-VKKIGHQAVLMD 58
Query: 103 YIQRLVQ 109
I++ Q
Sbjct: 59 LIKKYKQ 65
>gi|126032305 sterile alpha motif domain containing 3 isoform a
[Homo sapiens]
Length = 520
Score = 36.6 bits (83), Expect = 0.071
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 43 KTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLS 102
+TW EQVCS+L E L+ +E E++GA L L++ + L V +G + L+
Sbjct: 2 ETWSVEQVCSWLVEKNLGE--LVHRFQEEEVSGAALLALNDRMVQQL-VKKIGHQAVLMD 58
Query: 103 YIQRLVQ 109
I++ Q
Sbjct: 59 LIKKYKQ 65
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 36.2 bits (82), Expect = 0.093
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 300 IVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKR 333
I K N +D + W YFAR+C G++NN D ++
Sbjct: 399 IQRKKENSLDWEDWQYFARNCGAFGMKNNGDLEK 432
>gi|219842259 usherin isoform A [Homo sapiens]
Length = 1546
Score = 36.2 bits (82), Expect = 0.093
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 300 IVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKR 333
I K N +D + W YFAR+C G++NN D ++
Sbjct: 399 IQRKKENSLDWEDWQYFARNCGAFGMKNNGDLEK 432
>gi|58082089 hypothetical protein LOC161394 [Homo sapiens]
Length = 674
Score = 34.3 bits (77), Expect = 0.35
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 35 GLELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSL 94
G EL ++ W PE+V ++ + GF P + N I+G L ++ S +G+++
Sbjct: 535 GTELQFEHLNWDPEEVAEWISQLGF--PQYKECFITNFISGRKLIHVNCSNLPQMGITNF 592
Query: 95 GERKKLLSYIQRLVQIHVDTMK 116
+ K + + Q L++I K
Sbjct: 593 EDMKAISRHTQELLEIEEPLFK 614
>gi|224451082 cytospin A [Homo sapiens]
Length = 1117
Score = 32.7 bits (73), Expect = 1.0
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 26/168 (15%)
Query: 361 DMFHTRNSLHR------------RAYQHKVGNIIDTM-ITDAFLKADDYIEITGAGGKKY 407
D+ HTRN +R RA+Q + I+ + +T L++D + T K
Sbjct: 629 DLAHTRNDANRLQDAIAKVEDEYRAFQEEAKKQIEDLNMTLEKLRSDLDEKETERSDMKE 688
Query: 408 RISTAIDDMEAY--TKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQ 465
I D++E + KL DN+ + L +T KL+D + +++ E + L + + E
Sbjct: 689 TIFELEDEVEQHRAVKLHDNLIISDLENTVKKLQDQKHDMER-EIKTLHRRLREESAEW- 746
Query: 466 IKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKN 513
R+ L V A D+K +A++ I D+ + QEKN
Sbjct: 747 ----RQFQADLQTAVVIAN-----DIKSEAQEEIGDLKRRLHEAQEKN 785
>gi|224451080 cytospin A [Homo sapiens]
Length = 1117
Score = 32.7 bits (73), Expect = 1.0
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 26/168 (15%)
Query: 361 DMFHTRNSLHR------------RAYQHKVGNIIDTM-ITDAFLKADDYIEITGAGGKKY 407
D+ HTRN +R RA+Q + I+ + +T L++D + T K
Sbjct: 629 DLAHTRNDANRLQDAIAKVEDEYRAFQEEAKKQIEDLNMTLEKLRSDLDEKETERSDMKE 688
Query: 408 RISTAIDDMEAY--TKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQ 465
I D++E + KL DN+ + L +T KL+D + +++ E + L + + E
Sbjct: 689 TIFELEDEVEQHRAVKLHDNLIISDLENTVKKLQDQKHDMER-EIKTLHRRLREESAEW- 746
Query: 466 IKIKREDYESLPKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEKN 513
R+ L V A D+K +A++ I D+ + QEKN
Sbjct: 747 ----RQFQADLQTAVVIAN-----DIKSEAQEEIGDLKRRLHEAQEKN 785
>gi|41393057 connector enhancer of kinase suppressor of Ras 2 [Homo
sapiens]
Length = 1034
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 45 WGPEQVCSFLRRGGFEEPV--LLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLS 102
W P QV +++ G ++ + +KN +I+G L + E+LGVS +G ++ +L
Sbjct: 11 WSPSQVVDWMK--GLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILE 68
Query: 103 YIQRLVQIH 111
+ L ++
Sbjct: 69 AVDLLCALN 77
>gi|156119597 sterile alpha motif domain containing 12 isoform a
[Homo sapiens]
Length = 161
Score = 32.7 bits (73), Expect = 1.0
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 17 DSPRTPSNTPS-AEADWSPGLELHPDYKTWGPEQVCSFLRRGGFEE-PVLLKNIRENEIT 74
D TP + AE S ++L W + VC +L++ + + ++ ++++IT
Sbjct: 48 DQKGTPKRLQAEAETAKSATVKLSKPVALWTQQDVCKWLKKHCPNQYQIYSESFKQHDIT 107
Query: 75 GALLPCLDESRFENLGVSSLGERKKLLSYIQRL 107
G L L + + E +G++ R+ +L + +L
Sbjct: 108 GRALLRLTDKKLERMGIAQENLRQHILQQVLQL 140
>gi|156119595 sterile alpha motif domain containing 12 isoform b
[Homo sapiens]
Length = 201
Score = 32.7 bits (73), Expect = 1.0
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 17 DSPRTPSNTPS-AEADWSPGLELHPDYKTWGPEQVCSFLRRGGFEE-PVLLKNIRENEIT 74
D TP + AE S ++L W + VC +L++ + + ++ ++++IT
Sbjct: 48 DQKGTPKRLQAEAETAKSATVKLSKPVALWTQQDVCKWLKKHCPNQYQIYSESFKQHDIT 107
Query: 75 GALLPCLDESRFENLGVSSLGERKKLLSYIQRL 107
G L L + + E +G++ R+ +L + +L
Sbjct: 108 GRALLRLTDKKLERMGIAQENLRQHILQQVLQL 140
>gi|208022703 modulator of retrovirus infection [Homo sapiens]
Length = 157
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 4 ADSEQPSKRPRCDDSPRTPSNTPSAEAD-----WSPGLELHPDYKTWGPEQVCSFLRRGG 58
A ++ P P C SP T S + S E D +PGL P + G CS
Sbjct: 85 AGADNPEHSPPCSVSPHTSSGSSSEEEDSGKQALAPGLS--PSQRPGGSSSACSRSPEEE 142
Query: 59 FEEPVLLKNIRE 70
EE V LK +RE
Sbjct: 143 EEEDV-LKYVRE 153
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens]
Length = 1747
Score = 30.8 bits (68), Expect = 3.9
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 21 TPSNTPSAEADWSPGLELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRE----NEITGA 76
+PS PS + PG P Q+ S G + E + L R+ +EI GA
Sbjct: 1654 SPSPLPSPASGPGPGAPGPRRPFQQKPLQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGA 1713
Query: 77 LLPCLDESRFENLGVSSLGERKKLLSYIQRL 107
LP L + F LGV+ +G R + +++L
Sbjct: 1714 HLPALTKDDFVELGVTRVGHRMNIERALRQL 1744
>gi|21389545 sterile alpha motif domain containing 8 [Homo sapiens]
Length = 326
Score = 30.8 bits (68), Expect = 3.9
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 43 KTWGPEQVCSFLRRGGFEEPV-LLKNIRENEITGALLPCLDES--RFENLGVSSLGERKK 99
+ W + V +L+ GF E V +L N ++ + G L L E R L + LG+ K+
Sbjct: 10 RRWTTKHVAVWLKDEGFFEYVDILCN--KHRLDGITLLTLTEYDLRSPPLEIKVLGDIKR 67
Query: 100 LLSYIQRLVQIHVDTMK 116
L+ +++L +IH+D ++
Sbjct: 68 LMLSVRKLQKIHIDVLE 84
>gi|41872631 fatty acid synthase [Homo sapiens]
Length = 2511
Score = 30.4 bits (67), Expect = 5.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 263 EDICFIKEQIVGPLESPVEDSLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHH 322
E ICF +Q + V ++L P KG E + +++ G+D + + AR ++
Sbjct: 2366 EAICFFVQQFTDMEHNRVLEALLPLKGLEERVAAAVDLIIKSHQGLDRQELSFAARSFYY 2425
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 30.0 bits (66), Expect = 6.7
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 417 EAYTKLTDNIFLEILYSTDPKLKDAREILKQIEY-RNLFKYVGETQPTGQIKIKREDYES 475
EA+ + +++L PK+K A + + + Y + K +G P K ++ Y++
Sbjct: 3264 EAFPASVSHSLMDVLQIKSPKVKKALKAINSLGYLTSNTKGIGLLFPRQAEKEEKYTYKA 3323
Query: 476 LPKEVASAKPKVL-LDVKLKAEDF-IVDVINMDY----GMQEKNPIDHVSFYCKTAPNRA 529
LPK + +K + + ++ E +D+ + DY + +D + Y + + R
Sbjct: 3324 LPKPASHSKTDLFQFNASMQQEKLDAMDIPHYDYLTSQTREAVKQMDVIVGYTQNSKKRQ 3383
Query: 530 IRITKNQVSQLLP---EKFAEQL 549
+ Q Q LP E F E +
Sbjct: 3384 DLLKTGQKWQYLPISYENFWEHI 3406
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 30.0 bits (66), Expect = 6.7
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 417 EAYTKLTDNIFLEILYSTDPKLKDAREILKQIEY-RNLFKYVGETQPTGQIKIKREDYES 475
EA+ + +++L PK+K A + + + Y + K +G P K ++ Y++
Sbjct: 3193 EAFPASVSHSLMDVLQIKSPKVKKALKAINSLGYLTSNTKGIGLLFPRQAEKEEKYTYKA 3252
Query: 476 LPKEVASAKPKVL-LDVKLKAEDF-IVDVINMDY----GMQEKNPIDHVSFYCKTAPNRA 529
LPK + +K + + ++ E +D+ + DY + +D + Y + + R
Sbjct: 3253 LPKPASHSKTDLFQFNASMQQEKLDAMDIPHYDYLTSQTREAVKQMDVIVGYTQNSKKRQ 3312
Query: 530 IRITKNQVSQLLP---EKFAEQL 549
+ Q Q LP E F E +
Sbjct: 3313 DLLKTGQKWQYLPISYENFWEHI 3335
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 30.0 bits (66), Expect = 6.7
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 417 EAYTKLTDNIFLEILYSTDPKLKDAREILKQIEY-RNLFKYVGETQPTGQIKIKREDYES 475
EA+ + +++L PK+K A + + + Y + K +G P K ++ Y++
Sbjct: 3193 EAFPASVSHSLMDVLQIKSPKVKKALKAINSLGYLTSNTKGIGLLFPRQAEKEEKYTYKA 3252
Query: 476 LPKEVASAKPKVL-LDVKLKAEDF-IVDVINMDY----GMQEKNPIDHVSFYCKTAPNRA 529
LPK + +K + + ++ E +D+ + DY + +D + Y + + R
Sbjct: 3253 LPKPASHSKTDLFQFNASMQQEKLDAMDIPHYDYLTSQTREAVKQMDVIVGYTQNSKKRQ 3312
Query: 530 IRITKNQVSQLLP---EKFAEQL 549
+ Q Q LP E F E +
Sbjct: 3313 DLLKTGQKWQYLPISYENFWEHI 3335
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 30.0 bits (66), Expect = 6.7
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 417 EAYTKLTDNIFLEILYSTDPKLKDAREILKQIEY-RNLFKYVGETQPTGQIKIKREDYES 475
EA+ + +++L PK+K A + + + Y + K +G P K ++ Y++
Sbjct: 3193 EAFPASVSHSLMDVLQIKSPKVKKALKAINSLGYLTSNTKGIGLLFPRQAEKEEKYTYKA 3252
Query: 476 LPKEVASAKPKVL-LDVKLKAEDF-IVDVINMDY----GMQEKNPIDHVSFYCKTAPNRA 529
LPK + +K + + ++ E +D+ + DY + +D + Y + + R
Sbjct: 3253 LPKPASHSKTDLFQFNASMQQEKLDAMDIPHYDYLTSQTREAVKQMDVIVGYTQNSKKRQ 3312
Query: 530 IRITKNQVSQLLP---EKFAEQL 549
+ Q Q LP E F E +
Sbjct: 3313 DLLKTGQKWQYLPISYENFWEHI 3335
>gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens]
Length = 673
Score = 29.6 bits (65), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 10 SKRPRCDDS-PRTPSNTPSAEADWSPGLELHPDYKTWG 46
++ PRC S P +P N P +W+PG+ PD T G
Sbjct: 428 AREPRCPKSLPPSPFNAPLV-VEWAPGVTPKPDRVTLG 464
>gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo
sapiens]
Length = 576
Score = 29.6 bits (65), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 10 SKRPRCDDS-PRTPSNTPSAEADWSPGLELHPDYKTWG 46
++ PRC S P +P N P +W+PG+ PD T G
Sbjct: 331 AREPRCPKSLPPSPFNAPLV-VEWAPGVTPKPDRVTLG 367
>gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo
sapiens]
Length = 484
Score = 29.6 bits (65), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 10 SKRPRCDDS-PRTPSNTPSAEADWSPGLELHPDYKTWG 46
++ PRC S P +P N P +W+PG+ PD T G
Sbjct: 239 AREPRCPKSLPPSPFNAPLV-VEWAPGVTPKPDRVTLG 275
>gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo
sapiens]
Length = 639
Score = 29.6 bits (65), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 10 SKRPRCDDS-PRTPSNTPSAEADWSPGLELHPDYKTWG 46
++ PRC S P +P N P +W+PG+ PD T G
Sbjct: 394 AREPRCPKSLPPSPFNAPLV-VEWAPGVTPKPDRVTLG 430
>gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo
sapiens]
Length = 604
Score = 29.6 bits (65), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 10 SKRPRCDDS-PRTPSNTPSAEADWSPGLELHPDYKTWG 46
++ PRC S P +P N P +W+PG+ PD T G
Sbjct: 359 AREPRCPKSLPPSPFNAPLV-VEWAPGVTPKPDRVTLG 395
>gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo
sapiens]
Length = 581
Score = 29.6 bits (65), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 10 SKRPRCDDS-PRTPSNTPSAEADWSPGLELHPDYKTWG 46
++ PRC S P +P N P +W+PG+ PD T G
Sbjct: 336 AREPRCPKSLPPSPFNAPLV-VEWAPGVTPKPDRVTLG 372
>gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo
sapiens]
Length = 659
Score = 29.6 bits (65), Expect = 8.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 10 SKRPRCDDS-PRTPSNTPSAEADWSPGLELHPDYKTWG 46
++ PRC S P +P N P +W+PG+ PD T G
Sbjct: 414 AREPRCPKSLPPSPFNAPLV-VEWAPGVTPKPDRVTLG 450
>gi|71999153 hypothetical protein LOC23334 [Homo sapiens]
Length = 2533
Score = 29.6 bits (65), Expect = 8.7
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 512 KNPIDHVSFYCKTAP------NRAIRITKNQVSQLLPEKFAEQLIRVYCKKVDRKSLYAA 565
++P+D VS A +R I++ + V Q PE ++L+RV C+++D +L
Sbjct: 1236 RSPLDMVSSRSSDAARPVGQVDRHIQLLVHGVGQAGPE-ITDELVRVLCRRLDEATLDVI 1294
Query: 566 RQYFVQWC----ADRNFTKP 581
V+ C AD F +P
Sbjct: 1295 TVMLVRNCKLTPADVEFIQP 1314
>gi|82880648 MLK-related kinase isoform 1 [Homo sapiens]
Length = 800
Score = 29.6 bits (65), Expect = 8.7
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 23 SNTPSAEADWSPGLELHPDYKTWGPEQVCSFLRRG--GFEEPVLLKNIRENEITGALLPC 80
SNTP + + G D W V +R+G E V +EN ITG L
Sbjct: 326 SNTPLLPS-FEIGAWTEDDVYCW----VQQLVRKGDSSAEMSVYASLFKENNITGKRLLL 380
Query: 81 LDESRFENLGVSSLGERKKLLSYIQRLVQIHVD 113
L+E +++G+ S G S I++L +++
Sbjct: 381 LEEEDLKDMGIVSKGHIIHFKSAIEKLTHDYIN 413
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,169,889
Number of Sequences: 37866
Number of extensions: 1208349
Number of successful extensions: 2557
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2545
Number of HSP's gapped (non-prelim): 35
length of query: 626
length of database: 18,247,518
effective HSP length: 108
effective length of query: 518
effective length of database: 14,157,990
effective search space: 7333838820
effective search space used: 7333838820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.