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Search of human proteins with 34878753
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34878753 F-box protein 44 isoform 2 [Homo sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34878749 F-box protein 44 isoform 2 [Homo sapiens] 471 e-133
gi|34878753 F-box protein 44 isoform 2 [Homo sapiens] 471 e-133
gi|34878735 F-box protein 44 isoform 1 [Homo sapiens] 264 4e-71
gi|62388868 F-box protein 44 isoform 1 [Homo sapiens] 264 4e-71
gi|8922188 F-box only protein 6 [Homo sapiens] 209 2e-54
gi|15812198 F-box only protein 2 [Homo sapiens] 108 4e-24
gi|22325388 F-box protein FBG4 isoform 1 [Homo sapiens] 67 2e-11
gi|18643385 F-box protein FBG4 isoform 2 [Homo sapiens] 67 2e-11
gi|30520327 F-box protein 27 [Homo sapiens] 66 2e-11
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 39 0.003
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 39 0.003
gi|8923179 F-box and leucine-rich repeat protein 12 [Homo sapiens] 39 0.005
gi|83035136 F-box protein 31 [Homo sapiens] 37 0.018
gi|27312027 F-box only protein 16 [Homo sapiens] 36 0.023
gi|217416343 fibrosin-like 1 [Homo sapiens] 35 0.068
gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [H... 34 0.089
gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [H... 34 0.089
gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens] 34 0.12
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 33 0.26
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 33 0.26
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 33 0.26
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 32 0.44
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 32 0.44
gi|124248558 F-box and WD-40 domain protein 9 [Homo sapiens] 32 0.44
gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [H... 31 0.75
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 31 0.75
gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [H... 31 0.75
gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [H... 30 1.3
gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [H... 30 1.3
>gi|34878749 F-box protein 44 isoform 2 [Homo sapiens]
Length = 224
Score = 471 bits (1211), Expect = e-133
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
Query: 121 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL 180
QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
Sbjct: 121 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL 180
Query: 181 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP 224
HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
Sbjct: 181 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP 224
>gi|34878753 F-box protein 44 isoform 2 [Homo sapiens]
Length = 224
Score = 471 bits (1211), Expect = e-133
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
Query: 121 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL 180
QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
Sbjct: 121 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL 180
Query: 181 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP 224
HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
Sbjct: 181 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP 224
>gi|34878735 F-box protein 44 isoform 1 [Homo sapiens]
Length = 255
Score = 264 bits (675), Expect = 4e-71
Identities = 122/123 (99%), Positives = 123/123 (100%)
Query: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
Query: 121 QVR 123
QV+
Sbjct: 121 QVK 123
>gi|62388868 F-box protein 44 isoform 1 [Homo sapiens]
Length = 255
Score = 264 bits (675), Expect = 4e-71
Identities = 122/123 (99%), Positives = 123/123 (100%)
Query: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
Sbjct: 1 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
Query: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
Sbjct: 61 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
Query: 121 QVR 123
QV+
Sbjct: 121 QVK 123
>gi|8922188 F-box only protein 6 [Homo sapiens]
Length = 293
Score = 209 bits (532), Expect = 2e-54
Identities = 96/122 (78%), Positives = 105/122 (86%)
Query: 2 AVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITEDW 61
A+ +INELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDL+TLWKRKCLREGFIT+DW
Sbjct: 9 ALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLREGFITKDW 68
Query: 62 DQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPNDQ 121
DQPVADWKIFYFLRSLHRNLL NPCAEE W +D NGGD WKVE L +FP+ +
Sbjct: 69 DQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAHGTDFPDPK 128
Query: 122 VR 123
V+
Sbjct: 129 VK 130
>gi|15812198 F-box only protein 2 [Homo sapiens]
Length = 296
Score = 108 bits (270), Expect = 4e-24
Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 2 AVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITEDW 61
A ++ELPE +LL + +PA +L+ CRLVC W++L+D LW KC +EG + E
Sbjct: 43 AAAYLDELPEPLLLRVLAALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGG 102
Query: 62 DQPVAD-WKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND 120
+ D W+ FYFL RNLL NPC EE E W +GGD W+VE+L D EF +D
Sbjct: 103 VEEERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWCDVEHGGDGWRVEELPGDSGVEFTHD 162
Query: 121 Q 121
+
Sbjct: 163 E 163
>gi|22325388 F-box protein FBG4 isoform 1 [Homo sapiens]
Length = 287
Score = 66.6 bits (161), Expect = 2e-11
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
Query: 6 INELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLW------------------ 47
++ LP +L+++ +HVP R L+ CR VC WRD++D T+W
Sbjct: 27 LDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWLLQLARDRSAEGRALYAV 86
Query: 48 KRKCLREGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVE 107
++CL E++ P+ + RNL+ N C E+GF W ++ +GG+ W +E
Sbjct: 87 AQRCLPSNEDKEEF--PLCALARYCLRAPFGRNLIFNSCGEQGFRGWEVE-HGGNGWAIE 143
>gi|18643385 F-box protein FBG4 isoform 2 [Homo sapiens]
Length = 278
Score = 66.6 bits (161), Expect = 2e-11
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
Query: 6 INELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLW------------------ 47
++ LP +L+++ +HVP R L+ CR VC WRD++D T+W
Sbjct: 18 LDALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPTVWLLQLARDRSAEGRALYAV 77
Query: 48 KRKCLREGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVE 107
++CL E++ P+ + RNL+ N C E+GF W ++ +GG+ W +E
Sbjct: 78 AQRCLPSNEDKEEF--PLCALARYCLRAPFGRNLIFNSCGEQGFRGWEVE-HGGNGWAIE 134
>gi|30520327 F-box protein 27 [Homo sapiens]
Length = 283
Score = 66.2 bits (160), Expect = 2e-11
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 5 NINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREG--------F 56
++++LP +LL + +HVP R LL CR VC WR L+D LW R+
Sbjct: 25 DLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALVDGQALWLLILARDHGATGRALLH 84
Query: 57 ITEDWDQPVADWK-----IFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVED 108
+ P + + F R + RNL+ NPC +EG W + +GGD W VE+
Sbjct: 85 LARSCQSPARNARPCPLGRFCARRPIGRNLIRNPCGQEGLRKWMVQ-HGGDGWVVEE 140
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
sapiens]
Length = 1094
Score = 39.3 bits (90), Expect = 0.003
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 2 AVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLID--LVTLWKR 49
A+ +I LP +L +F +P L N LVC LWR++I L WK+
Sbjct: 259 ALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKK 308
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
Length = 1043
Score = 39.3 bits (90), Expect = 0.003
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 2 AVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLID--LVTLWKR 49
A+ +I LP +L +F +P L N LVC LWR++I L WK+
Sbjct: 208 ALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIPWKK 257
>gi|8923179 F-box and leucine-rich repeat protein 12 [Homo
sapiens]
Length = 326
Score = 38.5 bits (88), Expect = 0.005
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 8 ELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWK 48
ELP+++LLE+F+++P R + R VC W+ L+D LW+
Sbjct: 6 ELPDSVLLEIFSYLPVRDRIRISR-VCHRWKRLVDDRWLWR 45
>gi|83035136 F-box protein 31 [Homo sapiens]
Length = 539
Score = 36.6 bits (83), Expect = 0.018
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 8 ELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED 60
ELP +L+E+F +P L + VC+ +R ++ T+W+R+C E + E+
Sbjct: 69 ELPPELLVEIFASLPGTDLP-SLAQVCTKFRRILHTDTIWRRRCREEYGVCEN 120
>gi|27312027 F-box only protein 16 [Homo sapiens]
Length = 292
Score = 36.2 bits (82), Expect = 0.023
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 8 ELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD 67
+LP + L +F+ + R L C VC W++L +L LW KCLR + P
Sbjct: 91 KLPRVLSLYIFSFLDPRSLC-RCAQVCWHWKNLAELDQLWMLKCLRFNWYINFSPTPFEQ 149
Query: 68 --WKIFY--FLRSLH 78
WK Y ++ LH
Sbjct: 150 GIWKKHYIQMVKELH 164
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 34.7 bits (78), Expect = 0.068
Identities = 37/124 (29%), Positives = 48/124 (38%), Gaps = 35/124 (28%)
Query: 122 VRSQARLRVQV-----PAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPA 176
+RSQA+ ++ P P +S LP P DH +L+
Sbjct: 367 LRSQAQHQLHAAMFAAPPTLPPPPALPASSLVLPGHPADH-------------ELLRQEL 413
Query: 177 RRPLHLVSARRRGHSL-LGRLVRPEGHQQQHHHRA---------------PAALTPPEPP 220
+ SA R G SL G L+R E HQ QH H+ PA L PP PP
Sbjct: 414 NTRFLVQSAERPGASLGPGALLRAEFHQHQHTHQHTHQHTHQHQHTFAPFPAGL-PPTPP 472
Query: 221 SAEP 224
+A P
Sbjct: 473 AAPP 476
>gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [Homo
sapiens]
Length = 532
Score = 34.3 bits (77), Expect = 0.089
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 8 ELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD 67
+LP + + +F ++ ++L C V W+ + + LW R C +EG + + +
Sbjct: 52 QLPYELAINIFQYLDRKELG-RCAQVSKTWKVIAEDEVLWYRLCQQEGHLPDSSISDYSC 110
Query: 68 WKIFY 72
WK+ +
Sbjct: 111 WKLIF 115
>gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [Homo
sapiens]
Length = 598
Score = 34.3 bits (77), Expect = 0.089
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 8 ELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD 67
+LP + + +F ++ ++L C V W+ + + LW R C +EG + + +
Sbjct: 118 QLPYELAINIFQYLDRKELG-RCAQVSKTWKVIAEDEVLWYRLCQQEGHLPDSSISDYSC 176
Query: 68 WKIFY 72
WK+ +
Sbjct: 177 WKLIF 181
>gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens]
Length = 454
Score = 33.9 bits (76), Expect = 0.12
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 25 QLLLNCRLVCSLWRDLIDLVT-LWKRKCLREGFITEDWDQPVADWKIFYFLRSLHRNLLH 83
Q LL C LV W +I T +W+ C G+ +D Q WK Y L L
Sbjct: 75 QTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLE 134
Query: 84 NPCAEEGFEFWSL 96
+ E FE SL
Sbjct: 135 D---HEAFETSSL 144
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 32.7 bits (73), Expect = 0.26
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 122 VRSQARLRVQVPAV-------RSAPVVRARASGDLPARPGDHPAEERCQVEGG------- 167
V ++ R R P V R A V R G A+ G R QVEG
Sbjct: 605 VGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPH 664
Query: 168 LPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP 224
+P +L ++P+ L+ +L ++ HQ HH R PP P P
Sbjct: 665 VPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAP 721
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 32.7 bits (73), Expect = 0.26
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 122 VRSQARLRVQVPAV-------RSAPVVRARASGDLPARPGDHPAEERCQVEGG------- 167
V ++ R R P V R A V R G A+ G R QVEG
Sbjct: 559 VGARGRRRAHKPVVVGERLRGRGARVGTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPH 618
Query: 168 LPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP 224
+P +L ++P+ L+ +L ++ HQ HH R PP P P
Sbjct: 619 VPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAP 675
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 32.7 bits (73), Expect = 0.26
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 122 VRSQARLRVQVPAV-------RSAPVVRARASGDLPARPGDHPAEERCQVEGG------- 167
V ++ R R P V R A V R G A+ G R QVEG
Sbjct: 559 VGARGRRRAHKPVVVGERLRGRGARVRTWRRGGGRVAQRGQLAHVLRRQVEGAAAGLTPH 618
Query: 168 LPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP 224
+P +L ++P+ L+ +L ++ HQ HH R PP P P
Sbjct: 619 VPPVLGAAPQQPVALIRPDGHAAPVLAGVLEGVLHQHLHHRRREPEPGPPSPARTAP 675
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 32.7 bits (73), Expect = 0.26
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 105 KVEDL---SRDQRKEFPND---QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPA 158
KVE+L D+R+ P QV S + ++ P V +PV A+ +G L A P + A
Sbjct: 518 KVEELRWQEVDERQTMPRPYTFQVSSGGK-QILFPKVNLSPVTPAKDTG-LTAAPQEPKA 575
Query: 159 EERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPE------GHQQQHHHRAPA 212
+ V+ LP L +P L + A+ G ++ ++ G +++ H APA
Sbjct: 576 PKASPVQHALPSSLSVPHTAIL-VTGAQLCGPAVNLSQIKDTACKSLLGLEEKKHAEAPA 634
Query: 213 ALTPPEPP 220
PP P
Sbjct: 635 GENPPRGP 642
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 32.0 bits (71), Expect = 0.44
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 105 KVEDLSRDQRKEFPNDQVRSQARLR-VQVPAVRSAPVVRARASGD--------------- 148
K +++RDQ + FP +V+SQ LR V R PV +
Sbjct: 510 KTREVNRDQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPP 569
Query: 149 LPARPGDHP 157
LP+RPG P
Sbjct: 570 LPSRPGFPP 578
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 32.0 bits (71), Expect = 0.44
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 105 KVEDLSRDQRKEFPNDQVRSQARLR-VQVPAVRSAPVVRARASGD--------------- 148
K +++RDQ + FP +V+SQ LR V R PV +
Sbjct: 552 KTREVNRDQGRSFPPKEVKSQTELRKTPVSEARKTPVTQTPTQASNSQFIPIHHPGAFPP 611
Query: 149 LPARPGDHP 157
LP+RPG P
Sbjct: 612 LPSRPGFPP 620
>gi|124248558 F-box and WD-40 domain protein 9 [Homo sapiens]
Length = 458
Score = 32.0 bits (71), Expect = 0.44
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 LPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLR 53
LP +LLE+ +++ AR +L VC RDL+ W+ + LR
Sbjct: 82 LPPELLLEICSYLDARLVLHVLSRVCHALRDLVSDHVTWRLRALR 126
>gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [Homo
sapiens]
Length = 589
Score = 31.2 bits (69), Expect = 0.75
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 6 INELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREG 55
I+ LP+ + L + + + + LL + C WR L + LW+ KC EG
Sbjct: 163 ISLLPKELALYVLSFLEPKDLLQAAQ-TCRYWRILAEDNLLWREKCKEEG 211
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 31.2 bits (69), Expect = 0.75
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 6 INELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREG 55
I+ LP+ + L + + + + LL + C WR L + LW+ KC EG
Sbjct: 281 ISLLPKELALYVLSFLEPKDLLQAAQ-TCRYWRILAEDNLLWREKCKEEG 329
>gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [Homo
sapiens]
Length = 627
Score = 31.2 bits (69), Expect = 0.75
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 6 INELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREG 55
I+ LP+ + L + + + + LL + C WR L + LW+ KC EG
Sbjct: 201 ISLLPKELALYVLSFLEPKDLLQAAQ-TCRYWRILAEDNLLWREKCKEEG 249
>gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
sapiens]
Length = 242
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
Query: 114 RKEF 117
F
Sbjct: 162 YSVF 165
>gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
sapiens]
Length = 242
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 54 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ 113
EGF+ D D + ++ H NLL + A++ F L V G E KVE+L D+
Sbjct: 102 EGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDR 161
Query: 114 RKEF 117
F
Sbjct: 162 YSVF 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,501,717
Number of Sequences: 37866
Number of extensions: 518525
Number of successful extensions: 2148
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2090
Number of HSP's gapped (non-prelim): 93
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.