Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 34878709
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34878709 paired box protein 2 isoform c [Homo sapiens]
(396 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34878709 paired box protein 2 isoform c [Homo sapiens] 805 0.0
gi|34878716 paired box protein 2 isoform d [Homo sapiens] 693 0.0
gi|34878701 paired box protein 2 isoform b [Homo sapiens] 693 0.0
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 680 0.0
gi|34878703 paired box protein 2 isoform e [Homo sapiens] 680 0.0
gi|9951920 paired box 5 [Homo sapiens] 457 e-129
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 433 e-121
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 390 e-108
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] 379 e-105
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] 355 3e-98
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] 353 1e-97
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 239 2e-63
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 239 2e-63
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 230 2e-60
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 225 6e-59
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 220 2e-57
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 220 2e-57
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 220 2e-57
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 220 2e-57
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 220 2e-57
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 218 8e-57
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 213 2e-55
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 213 2e-55
gi|197276661 paired box 1 [Homo sapiens] 203 3e-52
gi|7242167 paired box 9 [Homo sapiens] 199 3e-51
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] 194 1e-49
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] 194 1e-49
gi|170784824 paired box 4 [Homo sapiens] 172 5e-43
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 42 7e-04
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 42 7e-04
>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
Length = 396
Score = 805 bits (2079), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
Sbjct: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
Sbjct: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 240
Query: 241 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 300
LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
Sbjct: 241 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 300
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRKLAE 360
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRKLAE
Sbjct: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRKLAE 360
Query: 361 VPPCVQPTGASSPATRTATPSTRPTTRLGDSATPPY 396
VPPCVQPTGASSPATRTATPSTRPTTRLGDSATPPY
Sbjct: 361 VPPCVQPTGASSPATRTATPSTRPTTRLGDSATPPY 396
>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
Length = 408
Score = 693 bits (1789), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
Sbjct: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
Sbjct: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 240
Query: 241 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 300
LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
Sbjct: 241 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 300
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP 340
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP
Sbjct: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP 340
>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
Length = 393
Score = 693 bits (1789), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
Sbjct: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
Query: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 240
PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA
Sbjct: 181 PVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEA 240
Query: 241 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 300
LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ
Sbjct: 241 LDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQ 300
Query: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP 340
TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP
Sbjct: 301 TYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVP 340
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 680 bits (1755), Expect = 0.0
Identities = 340/363 (93%), Positives = 340/363 (93%), Gaps = 23/363 (6%)
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
Sbjct: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
Query: 181 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 217
PVGSYSINGILGIPRSNGEKRKRDE DVSEGSVPNGDS
Sbjct: 181 PVGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 240
Query: 218 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 277
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 241 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 300
Query: 278 DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 337
DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG
Sbjct: 301 DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 360
Query: 338 MVP 340
MVP
Sbjct: 361 MVP 363
>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
Length = 431
Score = 680 bits (1755), Expect = 0.0
Identities = 340/363 (93%), Positives = 340/363 (93%), Gaps = 23/363 (6%)
Query: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
Sbjct: 1 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV 60
Query: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
Sbjct: 61 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA 120
Query: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND
Sbjct: 121 EGICDNDTVPSVSSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASND 180
Query: 181 PVGSYSINGILGIPRSNGEKRKRDE-----------------------DVSEGSVPNGDS 217
PVGSYSINGILGIPRSNGEKRKRDE DVSEGSVPNGDS
Sbjct: 181 PVGSYSINGILGIPRSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDS 240
Query: 218 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 277
QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL
Sbjct: 241 QSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGL 300
Query: 278 DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 337
DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG
Sbjct: 301 DEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAG 360
Query: 338 MVP 340
MVP
Sbjct: 361 MVP 363
>gi|9951920 paired box 5 [Homo sapiens]
Length = 391
Score = 457 bits (1176), Expect = e-129
Identities = 237/329 (72%), Positives = 263/329 (79%), Gaps = 11/329 (3%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSIKPGVIGGSKPKVATPKVV+KIAEYKRQNPTMFAWEIRDRLLAE +CDNDTVPSVSSI
Sbjct: 76 GSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSI 135
Query: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVG-SYSINGILGI- 193
NRIIRTKVQQP V A H+IV + + VSS S D G SYSI+GILGI
Sbjct: 136 NRIIRTKVQQP-------PNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILGIT 188
Query: 194 -PRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPD 252
P ++ KRKRDE + E VPNG S G D LRK +R D FTQQQLE LDRVFER Y D
Sbjct: 189 SPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQQQLEVLDRVFERQHYSD 248
Query: 253 VFQASEHIKSEQGNEYS-LPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMA 311
+F +E IK EQ EYS + +L GLD++K++L++ T ++GS+V G Q+YP+VTGRD+A
Sbjct: 249 IFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPGPQSYPIVTGRDLA 308
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLAGMVP 340
STTLPGYPPHVPP GQGSY TL GMVP
Sbjct: 309 STTLPGYPPHVPPAGQGSYSAPTLTGMVP 337
>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
Length = 387
Score = 433 bits (1114), Expect = e-121
Identities = 229/384 (59%), Positives = 272/384 (70%), Gaps = 22/384 (5%)
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
Query: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
Query: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246
ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE
Sbjct: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
Query: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306
R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV
Sbjct: 242 RQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299
Query: 307 GRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMV------------------PEAAVGPSS 348
GR+M TLPGYPPH+P +GQGSY +S +AGMV EA P+S
Sbjct: 300 GREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNS 359
Query: 349 SLMSKPGRKLAEVPPCVQPTGASS 372
SL+S P + P PT A++
Sbjct: 360 SLLSSPYYYSSTSRPSAPPTTATA 383
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 390 bits (1002), Expect = e-108
Identities = 221/397 (55%), Positives = 262/397 (65%), Gaps = 13/397 (3%)
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
Query: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
Query: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246
ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE
Sbjct: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
Query: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306
R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV
Sbjct: 242 RQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299
Query: 307 GRD--MASTTLPGYPPH-----VPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRKLA 359
+ S + PG P +PP S + G P + S P + A
Sbjct: 300 APPFWICSKSAPGSRPSMPFPMLPPCTGSSRARPSSQGERWWGPRCPDTHPTSPPADRAA 359
Query: 360 EVPPCVQP--TGASSPATRTATPSTRPTTRLGDSATP 394
P Q ++ A ATP T PT R G S TP
Sbjct: 360 MPPLPSQAWWQEVNTLAMPMATPPTPPTARPGASPTP 396
>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
Length = 450
Score = 379 bits (973), Expect = e-105
Identities = 225/447 (50%), Positives = 269/447 (60%), Gaps = 85/447 (19%)
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
Query: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
Query: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246
ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE
Sbjct: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
Query: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVV- 305
R YP+ + + H K EQG Y LP L LD+ K++L+ S P LG N+S QTYPVV
Sbjct: 242 RQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLSTHQTYPVVA 299
Query: 306 -----------TGRDMASTTLP----------------GYPPH----------------- 321
T +S++ P G PP
Sbjct: 300 DPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQA 359
Query: 322 --------------VPP----TGQGSYPTSTLAGMV------------------PEAAVG 345
PP +GQGSY +S +AGMV EA
Sbjct: 360 LLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRF 419
Query: 346 PSSSLMSKPGRKLAEVPPCVQPTGASS 372
P+SSL+S P + P PT A++
Sbjct: 420 PNSSLLSSPYYYSSTSRPSAPPTTATA 446
>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
Length = 321
Score = 355 bits (912), Expect = 3e-98
Identities = 188/327 (57%), Positives = 225/327 (68%), Gaps = 13/327 (3%)
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
Query: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
Query: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246
ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE
Sbjct: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
Query: 247 RPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVT 306
R YP+ + + H K EQG + P P + P L S
Sbjct: 242 RQHYPEAYASPSHTKGEQGERWWGPR-CPDTHPTSPPADRAAMPPLPSQ---------AW 291
Query: 307 GRDMASTTLPGYPPHVPPTGQ-GSYPT 332
+++ + +P P PPT + G+ PT
Sbjct: 292 WQEVNTLAMPMATPPTPPTARPGASPT 318
>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
Length = 287
Score = 353 bits (907), Expect = 1e-97
Identities = 178/270 (65%), Positives = 208/270 (77%), Gaps = 3/270 (1%)
Query: 9 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 68
P +++ GHGG+NQLGG FVNGRPLP+VVRQRIV+LAHQGVRPCDISRQLRVSHGCVSKI
Sbjct: 2 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 61
Query: 69 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
LGRYYETGSI+PGVIGGSKPKVATPKVV+KI +YKRQNPTMFAWEIRDRLLAEG+CDNDT
Sbjct: 62 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
Query: 129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
VPSVSSINRIIRTKVQQPF+ P T +PGHT++PS+A P S +D +GS YS
Sbjct: 122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
Query: 187 INGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFE 246
ING+LGI + +KRK D+ + + DSQS RKHLR D F+Q LE L+ FE
Sbjct: 182 INGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPFE 241
Query: 247 RPSYPDVFQASEHIKSEQG-NEYSLPALTP 275
R YP+ + + H K EQ N ++P TP
Sbjct: 242 RQHYPEAYASPSHTKGEQEVNTLAMPMATP 271
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 239 bits (611), Expect = 2e-63
Identities = 165/401 (41%), Positives = 211/401 (52%), Gaps = 42/401 (10%)
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
Query: 133 SSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HTIVPSTASPPVSSAS 178
SSINR++R + DG G+ T PG T VP P
Sbjct: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVP--GQPTQDGCQ 178
Query: 179 NDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQ 237
G + N I SNGE D D ++Q + RK R T FTQ+Q
Sbjct: 179 QQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLKRKLQRNRTSFTQEQ 221
Query: 238 LEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVS 297
+EAL++ FER YPDVF A E + + + LP + +L +
Sbjct: 222 IEALEKEFERTHYPDVF-ARERLAA----KIDLPEARIQVWFSNRRAKWRREEKLRNQRR 276
Query: 298 GTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRK 357
P + +T P P T S+ + ++ G A S+L P
Sbjct: 277 QASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFT 336
Query: 358 LAEVPPCVQPTGASSPATRTATPSTRPTT--RLGDSATPPY 396
+A P +QP S ++ + T P+ R D+ TPP+
Sbjct: 337 MANNLP-MQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPH 376
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 239 bits (611), Expect = 2e-63
Identities = 165/401 (41%), Positives = 211/401 (52%), Gaps = 42/401 (10%)
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+VS+GCVSKILGRY
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRY 60
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
YETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRLL+EG+C ND +PSV
Sbjct: 61 YETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 120
Query: 133 SSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HTIVPSTASPPVSSAS 178
SSINR++R + DG G+ T PG T VP P
Sbjct: 121 SSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVP--GQPTQDGCQ 178
Query: 179 NDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADT-FTQQQ 237
G + N I SNGE D D ++Q + RK R T FTQ+Q
Sbjct: 179 QQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLKRKLQRNRTSFTQEQ 221
Query: 238 LEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVS 297
+EAL++ FER YPDVF A E + + + LP + +L +
Sbjct: 222 IEALEKEFERTHYPDVF-ARERLAA----KIDLPEARIQVWFSNRRAKWRREEKLRNQRR 276
Query: 298 GTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPGRK 357
P + +T P P T S+ + ++ G A S+L P
Sbjct: 277 QASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFT 336
Query: 358 LAEVPPCVQPTGASSPATRTATPSTRPTT--RLGDSATPPY 396
+A P +QP S ++ + T P+ R D+ TPP+
Sbjct: 337 MANNLP-MQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPH 376
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 230 bits (586), Expect = 2e-60
Identities = 165/415 (39%), Positives = 211/415 (50%), Gaps = 56/415 (13%)
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR------------- 59
M H GVNQLGGVFVNGRPLPD RQ+IVELAH G RPCDISR L+
Sbjct: 1 MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQ 60
Query: 60 -VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRL 118
VS+GCVSKILGRYYETGSI+P IGGSKP+VATP+VV KIA+YKR+ P++FAWEIRDRL
Sbjct: 61 NVSNGCVSKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRL 120
Query: 119 LAEGICDNDTVPSVSSINRIIRTKVQQPFHPTPDG-----------AGTGVTAPG---HT 164
L+EG+C ND +PSVSSINR++R + DG G+ T PG T
Sbjct: 121 LSEGVCTNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGT 180
Query: 165 IVPSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSL 224
VP P G + N I SNGE D D ++Q +
Sbjct: 181 SVP--GQPTQDGCQQQEGGGENTNSI----SSNGE----DSD---------EAQMRLQLK 221
Query: 225 RKHLRADT-FTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSS 283
RK R T FTQ+Q+EAL++ FER YPDVF A E + + + LP +
Sbjct: 222 RKLQRNRTSFTQEQIEALEKEFERTHYPDVF-ARERLAA----KIDLPEARIQVWFSNRR 276
Query: 284 LSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAA 343
+L + P + +T P P T S+ + ++ G A
Sbjct: 277 AKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTAL 336
Query: 344 VGPSSSLMSKPGRKLAEVPPCVQPTGASSPATRTATPSTRPTT--RLGDSATPPY 396
S+L P +A P +QP S ++ + T P+ R D+ TPP+
Sbjct: 337 TNTYSALPPMPSFTMANNLP-MQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPH 390
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 225 bits (573), Expect = 6e-59
Identities = 156/392 (39%), Positives = 208/392 (53%), Gaps = 65/392 (16%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135
GSI+PG IGGSKPKV TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSSI
Sbjct: 94 GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
Query: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPR 195
+RI+R+K + D + ++ +SI+GIL R
Sbjct: 154 SRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-ER 194
Query: 196 SNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDVF 254
++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD++
Sbjct: 195 ASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIY 246
Query: 255 QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTT 314
E + + E + S+ A + G+N + MA
Sbjct: 247 TREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFNH 287
Query: 315 LPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV--Q 366
L P PPT + PT L+ +P+A PSS++ + +PP Q
Sbjct: 288 L--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVHQ 340
Query: 367 PTGASSPATRTA--TPSTR-PTTRLGDSATPP 395
T S+P + +A PSTR + DS PP
Sbjct: 341 STIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 372
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 220 bits (561), Expect = 2e-57
Identities = 156/393 (39%), Positives = 208/393 (52%), Gaps = 66/393 (16%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD+
Sbjct: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
Query: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMAST 313
+ E + + E + S+ A + G+N + MA
Sbjct: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFN 287
Query: 314 TLPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV-- 365
L P PPT + PT L+ +P+A PSS++ + +PP
Sbjct: 288 HL--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVH 340
Query: 366 QPTGASSPATRTA--TPSTR-PTTRLGDSATPP 395
Q T S+P + +A PSTR + DS PP
Sbjct: 341 QSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 373
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 220 bits (561), Expect = 2e-57
Identities = 156/393 (39%), Positives = 208/393 (52%), Gaps = 66/393 (16%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD+
Sbjct: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
Query: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMAST 313
+ E + + E + S+ A + G+N + MA
Sbjct: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFN 287
Query: 314 TLPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV-- 365
L P PPT + PT L+ +P+A PSS++ + +PP
Sbjct: 288 HL--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVH 340
Query: 366 QPTGASSPATRTA--TPSTR-PTTRLGDSATPP 395
Q T S+P + +A PSTR + DS PP
Sbjct: 341 QSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 373
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 220 bits (561), Expect = 2e-57
Identities = 156/393 (39%), Positives = 208/393 (52%), Gaps = 66/393 (16%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD+
Sbjct: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
Query: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMAST 313
+ E + + E + S+ A + G+N + MA
Sbjct: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFN 287
Query: 314 TLPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV-- 365
L P PPT + PT L+ +P+A PSS++ + +PP
Sbjct: 288 HL--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVH 340
Query: 366 QPTGASSPATRTA--TPSTR-PTTRLGDSATPP 395
Q T S+P + +A PSTR + DS PP
Sbjct: 341 QSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 373
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 220 bits (561), Expect = 2e-57
Identities = 156/393 (39%), Positives = 208/393 (52%), Gaps = 66/393 (16%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD+
Sbjct: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
Query: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMAST 313
+ E + + E + S+ A + G+N + MA
Sbjct: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFN 287
Query: 314 TLPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV-- 365
L P PPT + PT L+ +P+A PSS++ + +PP
Sbjct: 288 HL--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVH 340
Query: 366 QPTGASSPATRTA--TPSTR-PTTRLGDSATPP 395
Q T S+P + +A PSTR + DS PP
Sbjct: 341 QSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 373
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 220 bits (561), Expect = 2e-57
Identities = 156/393 (39%), Positives = 208/393 (52%), Gaps = 66/393 (16%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
R++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD+
Sbjct: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
Query: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMAST 313
+ E + + E + S+ A + G+N + MA
Sbjct: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFN 287
Query: 314 TLPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV-- 365
L P PPT + PT L+ +P+A PSS++ + +PP
Sbjct: 288 HL--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVH 340
Query: 366 QPTGASSPATRTA--TPSTR-PTTRLGDSATPP 395
Q T S+P + +A PSTR + DS PP
Sbjct: 341 QSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 373
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 218 bits (555), Expect = 8e-57
Identities = 136/323 (42%), Positives = 178/323 (55%), Gaps = 44/323 (13%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSS 153
Query: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
I+R++R K + + +SI+GILG
Sbjct: 154 ISRVLRIKFGKK--------------------EEEDEADKKEDDGEKKAKHSIDGILG-- 191
Query: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
G + DV +S+ + RK R+ TFT +QLE L++ FER YPD+
Sbjct: 192 -DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDI 242
Query: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMAST 313
+ E + + E + S+ A + G+N + + G T
Sbjct: 243 YTREELAQRTKLTEARVQVWF-------SNRRARWRKQAGANQLAAFNHLLPGG--FPPT 293
Query: 314 TLPGYPPHVPPTGQGSYPTSTLA 336
+P PP+ P +YPT+T++
Sbjct: 294 GMPTLPPYQLP--DSTYPTTTIS 314
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 213 bits (542), Expect = 2e-55
Identities = 136/325 (41%), Positives = 178/325 (54%), Gaps = 46/325 (14%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS--V 132
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPS V
Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 153
Query: 133 SSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILG 192
SSI+R++R K + + +SI+GILG
Sbjct: 154 SSISRVLRIKFGKK--------------------EEEDEADKKEDDGEKKAKHSIDGILG 193
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYP 251
G + DV +S+ + RK R+ TFT +QLE L++ FER YP
Sbjct: 194 ---DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP 242
Query: 252 DVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMA 311
D++ E + + E + S+ A + G+N + + G
Sbjct: 243 DIYTREELAQRTKLTEARVQVWF-------SNRRARWRKQAGANQLAAFNHLLPGG--FP 293
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLA 336
T +P PP+ P +YPT+T++
Sbjct: 294 PTGMPTLPPYQLP--DSTYPTTTIS 316
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 213 bits (542), Expect = 2e-55
Identities = 136/325 (41%), Positives = 178/325 (54%), Gaps = 46/325 (14%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS--V 132
GSI+PG IGGSKP+ VATP V KI EYKR+NP MF+WEIRDRLL +G CD TVPS V
Sbjct: 94 GSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLV 153
Query: 133 SSINRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILG 192
SSI+R++R K + + +SI+GILG
Sbjct: 154 SSISRVLRIKFGKK--------------------EEEDEADKKEDDGEKKAKHSIDGILG 193
Query: 193 IPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYP 251
G + DV +S+ + RK R+ TFT +QLE L++ FER YP
Sbjct: 194 ---DKGNRLDEGSDV--------ESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYP 242
Query: 252 DVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMA 311
D++ E + + E + S+ A + G+N + + G
Sbjct: 243 DIYTREELAQRTKLTEARVQVWF-------SNRRARWRKQAGANQLAAFNHLLPGG--FP 293
Query: 312 STTLPGYPPHVPPTGQGSYPTSTLA 336
T +P PP+ P +YPT+T++
Sbjct: 294 PTGMPTLPPYQLP--DSTYPTTTIS 316
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 203 bits (516), Expect = 3e-52
Identities = 155/401 (38%), Positives = 196/401 (48%), Gaps = 57/401 (14%)
Query: 12 AMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 71
AM +G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL R
Sbjct: 94 AMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILAR 153
Query: 72 YYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 131
Y ETGSI PG IGGSKP+V TP VV I +YK+ +P +FAWEIRDRLLA+G+CD VPS
Sbjct: 154 YNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPS 213
Query: 132 VSSINRIIRTKVQQPFHPTPDGAG----TGVTAPGHTI----VPSTASPPVSSASNDPVG 183
VSSI+RI+R K+ P P A + T P + I PS SP + + P G
Sbjct: 214 VSSISRILRNKIGSLAQPGPYEASKQPPSQPTLPYNHIYQYPYPSPVSPTGAKMGSHP-G 272
Query: 184 SYSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQ--QLEAL 241
G + IPR S P+ S S + +R TF +Q L
Sbjct: 273 VPGTAGHVSIPR---------------SWPSAHSVSNILGIR------TFMEQTGALAGS 311
Query: 242 DRVFERPSYPD-------VFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGS 294
+ P D F A+ + N PAL ++K + SAST +G
Sbjct: 312 EGTAYSPKMEDWAGVNRTAFPATPAV-----NGLEKPALEA---DIKYTQSASTLSAVGG 363
Query: 295 NVSGTQTYPVVTGRDMASTTLPGY----PPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSL 350
+ YP + S GY PP P G P AG+ ++
Sbjct: 364 FLPAC-AYPASNQHGVYSAPGGGYLAPGPPWPPAQGPPLAPPG--AGVAVHGGELAAAMT 420
Query: 351 MSKPGRKLAEVPPCVQPTGASSPATRTATPSTRPTTRLGDS 391
P R+ + P +P +P+ +RP G S
Sbjct: 421 FKHPSREGSLPAPAARP---RTPSVAYTDCPSRPRPPRGSS 458
>gi|7242167 paired box 9 [Homo sapiens]
Length = 341
Score = 199 bits (507), Expect = 3e-51
Identities = 111/209 (53%), Positives = 131/209 (62%), Gaps = 33/209 (15%)
Query: 13 MHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 72
M P G VNQLGGVFVNGRPLP+ +R RIVELA G+RPCDISRQLRVSHGCVSKIL RY
Sbjct: 1 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 60
Query: 73 YETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSV 132
ETGSI PG IGGSKP+V TP VV I YK+++P +FAWEIRDRLLA+G+CD VPSV
Sbjct: 61 NETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSV 120
Query: 133 SSINRIIRTKV-----------QQPFHPTPD-----------------GAGTGVTAPGHT 164
SSI+RI+R K+ + PTP A T PG
Sbjct: 121 SSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVP 180
Query: 165 IVPSTASPPVSSASNDPVGSYSINGILGI 193
+P + + P + S S+S+ ILGI
Sbjct: 181 AIPGSVAMPRTWPS-----SHSVTDILGI 204
>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
Length = 206
Score = 194 bits (493), Expect = 1e-49
Identities = 93/128 (72%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 135 INRIIRTK 142
I+RI+R+K
Sbjct: 154 ISRILRSK 161
>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
Length = 215
Score = 194 bits (493), Expect = 1e-49
Identities = 93/128 (72%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Query: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
Query: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
Query: 135 INRIIRTK 142
I+RI+R+K
Sbjct: 154 ISRILRSK 161
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 172 bits (436), Expect = 5e-43
Identities = 128/361 (35%), Positives = 175/361 (48%), Gaps = 68/361 (18%)
Query: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
+NQLGG+FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG ++
Sbjct: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
Query: 80 PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRII 139
P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
Query: 140 RTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGE 199
R + P T + +P + P+ +P S S P G++ G
Sbjct: 121 RALQEDQGLPC-----TRLRSPA-VLAPAVLTP--HSGSETPRGTHPGTG---------- 162
Query: 200 KRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEH 259
H F+ Q EAL++ F+R YPD
Sbjct: 163 ---------------------------HRNRTIFSPSQAEALEKEFQRGQYPD-----SV 190
Query: 260 IKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYP 319
+ + SLP D V+ S N + + T+P
Sbjct: 191 ARGKLATATSLPE-----DTVRVWFS---NRRAKWRRQEKLKWEMQLPGASQGLTVPRVA 242
Query: 320 PHVPPTGQ--GSYPTSTLAGMVPEAAVGPSSSLM---SKPGRKLAEVPP--CVQPTGASS 372
P + Q GS PT+ L + P +GPS + + P R L++ PP C++P
Sbjct: 243 PGIISAQQSPGSVPTAALPALEP---LGPSCYQLCWATAPERCLSDTPPKACLKPCWGHL 299
Query: 373 P 373
P
Sbjct: 300 P 300
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 42.4 bits (98), Expect = 7e-04
Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 285 SASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGM----VP 340
SA G + + Q P +A T +P H PP G+ S AG P
Sbjct: 28 SARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATP 87
Query: 341 EAAVGPSSSLMSKPGRKLAEVPPCVQPTGASSPATRTATPSTRPTTRLGDSATP 394
E A PS + PG +A + P + P G RT P PT GD P
Sbjct: 88 EPARSPSIAEPG-PGIPVAAIKPVILPGGGGCTGARTENPPLSPTR--GDCRVP 138
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 42.4 bits (98), Expect = 7e-04
Identities = 34/114 (29%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 285 SASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGM----VP 340
SA G + + Q P +A T +P H PP G+ S AG P
Sbjct: 28 SARAGAGAGRSPAARQVAPPGGPSSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLATP 87
Query: 341 EAAVGPSSSLMSKPGRKLAEVPPCVQPTGASSPATRTATPSTRPTTRLGDSATP 394
E A PS + PG +A + P + P G RT P PT GD P
Sbjct: 88 EPARAPSIAEPG-PGIPVAAIKPVILPGGGGCTGARTENPPLSPTR--GDCRVP 138
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,273,181
Number of Sequences: 37866
Number of extensions: 967738
Number of successful extensions: 5125
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 4033
Number of HSP's gapped (non-prelim): 1147
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.