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Search of human proteins with 34304333
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34304333 ring finger protein 7 isoform 3 [Homo sapiens]
(90 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34304333 ring finger protein 7 isoform 3 [Homo sapiens] 193 3e-50
gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens] 124 2e-29
gi|7657508 ring-box 1 [Homo sapiens] 57 2e-09
gi|50409750 APC11 anaphase promoting complex subunit 11 isoform ... 32 0.082
gi|50409789 APC11 anaphase promoting complex subunit 11 isoform ... 32 0.082
gi|50409781 APC11 anaphase promoting complex subunit 11 isoform ... 32 0.082
gi|50409804 APC11 anaphase promoting complex subunit 11 isoform ... 32 0.082
gi|50409796 APC11 anaphase promoting complex subunit 11 isoform ... 32 0.082
gi|50409810 APC11 anaphase promoting complex subunit 11 isoform ... 32 0.082
gi|18777675 APC11 anaphase promoting complex subunit 11 isoform ... 32 0.082
gi|4557040 oncostatin M receptor [Homo sapiens] 27 2.6
gi|28559074 spermine oxidase isoform 1 [Homo sapiens] 27 2.6
gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III ... 27 3.4
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 26 7.7
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 26 7.7
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 26 7.7
gi|145701030 transmembrane protease, serine 4 isoform 3 [Homo sa... 26 7.7
gi|15451940 transmembrane protease, serine 4 isoform 1 [Homo sap... 26 7.7
gi|11386181 H2.0-like homeobox [Homo sapiens] 25 10.0
gi|110611176 glutamate receptor, metabotropic 6 precursor [Homo ... 25 10.0
>gi|34304333 ring finger protein 7 isoform 3 [Homo sapiens]
Length = 90
Score = 193 bits (490), Expect = 3e-50
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVL 60
MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVL
Sbjct: 1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVL 60
Query: 61 DVKLKTNKRTVLWSGENVIIPSTTAACPCG 90
DVKLKTNKRTVLWSGENVIIPSTTAACPCG
Sbjct: 61 DVKLKTNKRTVLWSGENVIIPSTTAACPCG 90
>gi|7657522 ring finger protein 7 isoform 1 [Homo sapiens]
Length = 113
Score = 124 bits (310), Expect = 2e-29
Identities = 59/65 (90%), Positives = 61/65 (93%), Gaps = 2/65 (3%)
Query: 1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVL 60
MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQ V+
Sbjct: 1 MADVEDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQ--VM 58
Query: 61 DVKLK 65
D L+
Sbjct: 59 DACLR 63
>gi|7657508 ring-box 1 [Homo sapiens]
Length = 108
Score = 57.4 bits (137), Expect = 2e-09
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 20 SGSKSG-GDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVLDVKLKTNK 68
SG+ SG G K F +KKWNAVA+W+WD+ D CAICR + L ++ + N+
Sbjct: 11 SGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60
>gi|50409750 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 0.082
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 32 LKKWNAVAMWSWDVECDTCAICRV 55
+K WN VA W W + C ICR+
Sbjct: 5 IKCWNGVATWLWVANDENCGICRM 28
>gi|50409789 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 0.082
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 32 LKKWNAVAMWSWDVECDTCAICRV 55
+K WN VA W W + C ICR+
Sbjct: 5 IKCWNGVATWLWVANDENCGICRM 28
>gi|50409781 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 0.082
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 32 LKKWNAVAMWSWDVECDTCAICRV 55
+K WN VA W W + C ICR+
Sbjct: 5 IKCWNGVATWLWVANDENCGICRM 28
>gi|50409804 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 0.082
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 32 LKKWNAVAMWSWDVECDTCAICRV 55
+K WN VA W W + C ICR+
Sbjct: 5 IKCWNGVATWLWVANDENCGICRM 28
>gi|50409796 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 0.082
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 32 LKKWNAVAMWSWDVECDTCAICRV 55
+K WN VA W W + C ICR+
Sbjct: 5 IKCWNGVATWLWVANDENCGICRM 28
>gi|50409810 APC11 anaphase promoting complex subunit 11 isoform 1
[Homo sapiens]
Length = 196
Score = 32.3 bits (72), Expect = 0.082
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 32 LKKWNAVAMWSWDVECDTCAICRV 55
+K WN VA W W + C ICR+
Sbjct: 5 IKCWNGVATWLWVANDENCGICRM 28
>gi|18777675 APC11 anaphase promoting complex subunit 11 isoform 2
[Homo sapiens]
Length = 84
Score = 32.3 bits (72), Expect = 0.082
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 32 LKKWNAVAMWSWDVECDTCAICRV 55
+K WN VA W W + C ICR+
Sbjct: 5 IKCWNGVATWLWVANDENCGICRM 28
>gi|4557040 oncostatin M receptor [Homo sapiens]
Length = 979
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 34 KWNAVAMWSWD----VECDTCAICRVQMPVLDVKLKTNKRTVLWSG-ENVIIPSTT 84
KWN V WSW+ +EC T + R++ V D K WS E V + +T
Sbjct: 90 KWNQVLHWSWESELPLECATHFV-RIKSLVDDAKFPEPNFWSNWSSWEEVSVQDST 144
>gi|28559074 spermine oxidase isoform 1 [Homo sapiens]
Length = 555
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 16 HSGSSGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQMPVLDVKLKTNKR 69
H+ +G G + +W+ WS VEC+ C + ++ V L KR
Sbjct: 286 HNHDTGEGGQGGEEPRGGRWDEDEQWSVVVECEDCELIPADHVIVTVSLGVLKR 339
>gi|121583483 phosphatidylinositol-3-phosphate 5-kinase type III
isoform 2 [Homo sapiens]
Length = 2098
Score = 26.9 bits (58), Expect = 3.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 12 ALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVEC 47
A ++ SG SGSK+ GD+ L +AV WS V+C
Sbjct: 1176 ASSTSSGQSGSKNEGDEERGLILSDAV--WSTKVDC 1209
>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4470
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 52 ICRVQMPVLDVKLKTNKRTVLWSGENV 78
+ + ++ +DVKL + + T+ W+GE V
Sbjct: 747 LIKSELEAIDVKLLSAETTLFWNGEGV 773
>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 52 ICRVQMPVLDVKLKTNKRTVLWSGENV 78
+ + ++ +DVKL + + T+ W+GE V
Sbjct: 738 LIKSELEAIDVKLLSAETTLFWNGEGV 764
>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 52 ICRVQMPVLDVKLKTNKRTVLWSGENV 78
+ + ++ +DVKL + + T+ W+GE V
Sbjct: 738 LIKSELEAIDVKLLSAETTLFWNGEGV 764
>gi|145701030 transmembrane protease, serine 4 isoform 3 [Homo
sapiens]
Length = 432
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 5 EDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVEC 47
E G +TC SGG M+ +W+ V + SW C
Sbjct: 372 EGGVDTCQ---------GDSGGPLMYQSDQWHVVGIVSWGYGC 405
>gi|15451940 transmembrane protease, serine 4 isoform 1 [Homo
sapiens]
Length = 437
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 5 EDGEETCALASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVEC 47
E G +TC SGG M+ +W+ V + SW C
Sbjct: 377 EGGVDTCQ---------GDSGGPLMYQSDQWHVVGIVSWGYGC 410
>gi|11386181 H2.0-like homeobox [Homo sapiens]
Length = 488
Score = 25.4 bits (54), Expect = 10.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 14 ASHSGSSGSKSGGDKMFSLKKWNAVAMWSWDVEC 47
AS +GS GS GG FS ++++ S C
Sbjct: 418 ASSAGSGGSSGGGGNSFSFSSASSLSSSSTSAGC 451
>gi|110611176 glutamate receptor, metabotropic 6 precursor [Homo
sapiens]
Length = 877
Score = 25.4 bits (54), Expect = 10.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 64 LKTNKRTVLWSGENVIIPSTTAACPCG 90
L+ + + WSG+ +PS+ + PCG
Sbjct: 497 LRLDVEALQWSGDPHEVPSSLCSLPCG 523
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.128 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,855,816
Number of Sequences: 37866
Number of extensions: 141297
Number of successful extensions: 313
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 20
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.