Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 34303939
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34303939 exonuclease 3'-5' domain containing 1 [Homo
sapiens]
(514 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34303939 exonuclease 3'-5' domain containing 1 [Homo sapiens] 1026 0.0
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 38 0.019
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 37 0.033
gi|4505917 exosome component 10 isoform 2 [Homo sapiens] 34 0.28
gi|50301240 exosome component 10 isoform 1 [Homo sapiens] 34 0.28
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 33 0.48
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 33 0.48
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 33 0.48
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 33 0.48
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 33 0.48
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 33 0.48
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 33 0.48
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 33 0.48
gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens] 33 0.48
gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo ... 33 0.62
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 33 0.62
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 33 0.81
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 33 0.81
gi|156104908 myosin heavy chain 6 [Homo sapiens] 33 0.81
gi|114431248 hypothetical protein LOC205717 [Homo sapiens] 32 1.1
gi|118498356 kinectin 1 isoform a [Homo sapiens] 32 1.1
gi|118498368 kinectin 1 isoform c [Homo sapiens] 32 1.1
gi|33620775 kinectin 1 isoform a [Homo sapiens] 32 1.1
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 32 1.4
gi|58197556 hypothetical protein LOC200205 [Homo sapiens] 32 1.4
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 32 1.8
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 32 1.8
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 32 1.8
gi|163792198 latrophilin 3 precursor [Homo sapiens] 32 1.8
gi|171460914 dynamin 1-like isoform 1 [Homo sapiens] 31 2.4
>gi|34303939 exonuclease 3'-5' domain containing 1 [Homo sapiens]
Length = 514
Score = 1026 bits (2653), Expect = 0.0
Identities = 514/514 (100%), Positives = 514/514 (100%)
Query: 1 MEDSEFLAYVELLDEVEQGSVRAKASSVSLHAERTWMEKMKVEDLNVCEPASPAPEAPAT 60
MEDSEFLAYVELLDEVEQGSVRAKASSVSLHAERTWMEKMKVEDLNVCEPASPAPEAPAT
Sbjct: 1 MEDSEFLAYVELLDEVEQGSVRAKASSVSLHAERTWMEKMKVEDLNVCEPASPAPEAPAT 60
Query: 61 SLLNDLKYSPSEEEEVTYTVINQFQQKFGAAILHIKKQNVLSVAAEGANVCRHGKLCWLQ 120
SLLNDLKYSPSEEEEVTYTVINQFQQKFGAAILHIKKQNVLSVAAEGANVCRHGKLCWLQ
Sbjct: 61 SLLNDLKYSPSEEEEVTYTVINQFQQKFGAAILHIKKQNVLSVAAEGANVCRHGKLCWLQ 120
Query: 121 VATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFD 180
VATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFD
Sbjct: 121 VATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFD 180
Query: 181 TQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPEVWFIRP 240
TQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPEVWFIRP
Sbjct: 181 TQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPEVWFIRP 240
Query: 241 VSPSLLKILALEATYLLPLRLALLDEMMSDLTTLVDGYLNTYREGSADRLGGTEPTCMEL 300
VSPSLLKILALEATYLLPLRLALLDEMMSDLTTLVDGYLNTYREGSADRLGGTEPTCMEL
Sbjct: 241 VSPSLLKILALEATYLLPLRLALLDEMMSDLTTLVDGYLNTYREGSADRLGGTEPTCMEL 300
Query: 301 PEELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQPKKLVTETAGKEEKVKGFLFGKNF 360
PEELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQPKKLVTETAGKEEKVKGFLFGKNF
Sbjct: 301 PEELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQPKKLVTETAGKEEKVKGFLFGKNF 360
Query: 361 RIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHLPPTEEGETSEDSSNKLICTKSKGSE 420
RIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHLPPTEEGETSEDSSNKLICTKSKGSE
Sbjct: 361 RIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHLPPTEEGETSEDSSNKLICTKSKGSE 420
Query: 421 DQRITQKEHFMTPKHEFQASLSLKEETEQLLMVENKEDLKCTKQAVSMSSFPQETRVSPS 480
DQRITQKEHFMTPKHEFQASLSLKEETEQLLMVENKEDLKCTKQAVSMSSFPQETRVSPS
Sbjct: 421 DQRITQKEHFMTPKHEFQASLSLKEETEQLLMVENKEDLKCTKQAVSMSSFPQETRVSPS 480
Query: 481 DTFYPIRKTVVSTLPPCPALEKIDSWISPFLNLP 514
DTFYPIRKTVVSTLPPCPALEKIDSWISPFLNLP
Sbjct: 481 DTFYPIRKTVVSTLPPCPALEKIDSWISPFLNLP 514
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 38.1 bits (87), Expect = 0.019
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 34/149 (22%)
Query: 377 VNLLKEESLNKQATNPQHLP--PTEEGETSEDSSNKLI---CTKSKGSE-----DQRITQ 426
V+ L+EE N + + + +P TE GE ED NK C SK E Q I++
Sbjct: 1009 VSRLEEELANLKDESKKEIPLSETERGEVEEDKENKEYSEKCVTSKCQEIEIYLKQTISE 1068
Query: 427 K-----------EHFMTPKHEFQA-----SLSLKEETEQ--LLMVENKEDLKCTKQAVSM 468
K E + + +FQA + +L+++T Q LL E E+ QA+
Sbjct: 1069 KEVELQHIRKDLEEKLAAEEQFQALVKQMNQTLQDKTNQIDLLQAEISEN-----QAIIQ 1123
Query: 469 SSFPQETRVSPSDTFYPIRKTVVSTLPPC 497
T S D+ +++TVV + PPC
Sbjct: 1124 KLITSNTDASDGDSVALVKETVVIS-PPC 1151
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 37.4 bits (85), Expect = 0.033
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 20/206 (9%)
Query: 284 EGSADRLGGTEPTCMELPEELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQP-----K 338
+ AD L E C +L + +QL+ K+ E+A E +NA+ + L+ K
Sbjct: 895 QSEADSLADAEERCEQLIKNKIQLEAKIKEVTERAEEEEEINAELTAKKRKLEDECSELK 954
Query: 339 KLVTE---TAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHL 395
K + + T K EK K+ +K + T ++ G + + S K+A H
Sbjct: 955 KDIDDLELTLAKVEK------EKHATENKVKNLT-EEMAGLDETIAKLSKEKKALQETHQ 1007
Query: 396 PPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEFQASL---SLKEETEQLLM 452
++ + ED N I TK+K +Q++ E + + + + L K E + L
Sbjct: 1008 QTLDDLQAEEDKVN--ILTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLA 1065
Query: 453 VENKEDLKCTKQAVSMSSFPQETRVS 478
E+ D++ KQ + +E +S
Sbjct: 1066 QESTMDMENDKQQLDEKLEKKEFEIS 1091
>gi|4505917 exosome component 10 isoform 2 [Homo sapiens]
Length = 860
Score = 34.3 bits (77), Expect = 0.28
Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 45/222 (20%)
Query: 44 DLNVCEPASPAPEAPATSLLNDLKYSP-------SEEEEVTYTVINQFQQKFGAAILHIK 96
+LN PA + P L ++ +P E E+ ++N Q+F + H
Sbjct: 261 ELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNC--QEFAVDLEHHS 318
Query: 97 KQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKV 156
++ L G C +Q++T ++ D L S + L L D I+KV
Sbjct: 319 YRSFL------------GLTCLMQISTRTEDFIIDTLELRSDMYI--LNESLTDPAIVKV 364
Query: 157 IHDCRWLSDCLSHQYGILLNNVFDT-QVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
H + L +G+ + N+FDT Q A +L + +L + + K Q+A
Sbjct: 365 FHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSN--KQYQLA 422
Query: 216 PKYLSFLEKRQKLIQENPEVWFIRPVSPSLLKILALEATYLL 257
W IRP+ +L + YLL
Sbjct: 423 D-------------------WRIRPLPEEMLSYARDDTHYLL 445
>gi|50301240 exosome component 10 isoform 1 [Homo sapiens]
Length = 885
Score = 34.3 bits (77), Expect = 0.28
Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 45/222 (20%)
Query: 44 DLNVCEPASPAPEAPATSLLNDLKYSP-------SEEEEVTYTVINQFQQKFGAAILHIK 96
+LN PA + P L ++ +P E E+ ++N Q+F + H
Sbjct: 261 ELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVELNEKLLNC--QEFAVDLEHHS 318
Query: 97 KQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKV 156
++ L G C +Q++T ++ D L S + L L D I+KV
Sbjct: 319 YRSFL------------GLTCLMQISTRTEDFIIDTLELRSDMYI--LNESLTDPAIVKV 364
Query: 157 IHDCRWLSDCLSHQYGILLNNVFDT-QVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
H + L +G+ + N+FDT Q A +L + +L + + K Q+A
Sbjct: 365 FHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSN--KQYQLA 422
Query: 216 PKYLSFLEKRQKLIQENPEVWFIRPVSPSLLKILALEATYLL 257
W IRP+ +L + YLL
Sbjct: 423 D-------------------WRIRPLPEEMLSYARDDTHYLL 445
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 33.5 bits (75), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 406 DSSNKLICTKSKGSEDQRITQKEHFMTPKHEF-QASLSLKEETEQLLMVENKEDLKCTKQ 464
++ N ICT +GS + +T +E +T K E Q + E TEQL + + +
Sbjct: 1608 ENENTGICTNKRGSSNPLLTTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRP 1667
Query: 465 AVSMSSFPQETR 476
S S+ P +R
Sbjct: 1668 HFSFSTLPTVSR 1679
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 33.5 bits (75), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 406 DSSNKLICTKSKGSEDQRITQKEHFMTPKHEF-QASLSLKEETEQLLMVENKEDLKCTKQ 464
++ N ICT +GS + +T +E +T K E Q + E TEQL + + +
Sbjct: 1585 ENENTGICTNKRGSSNPLLTTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRP 1644
Query: 465 AVSMSSFPQETR 476
S S+ P +R
Sbjct: 1645 HFSFSTLPTVSR 1656
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 33.5 bits (75), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 406 DSSNKLICTKSKGSEDQRITQKEHFMTPKHEF-QASLSLKEETEQLLMVENKEDLKCTKQ 464
++ N ICT +GS + +T +E +T K E Q + E TEQL + + +
Sbjct: 1588 ENENTGICTNKRGSSNPLLTTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRP 1647
Query: 465 AVSMSSFPQETR 476
S S+ P +R
Sbjct: 1648 HFSFSTLPTVSR 1659
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 33.5 bits (75), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 406 DSSNKLICTKSKGSEDQRITQKEHFMTPKHEF-QASLSLKEETEQLLMVENKEDLKCTKQ 464
++ N ICT +GS + +T +E +T K E Q + E TEQL + + +
Sbjct: 1568 ENENTGICTNKRGSSNPLLTTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRP 1627
Query: 465 AVSMSSFPQETR 476
S S+ P +R
Sbjct: 1628 HFSFSTLPTVSR 1639
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 33.5 bits (75), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 406 DSSNKLICTKSKGSEDQRITQKEHFMTPKHEF-QASLSLKEETEQLLMVENKEDLKCTKQ 464
++ N ICT +GS + +T +E +T K E Q + E TEQL + + +
Sbjct: 1605 ENENTGICTNKRGSSNPLLTTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRP 1664
Query: 465 AVSMSSFPQETR 476
S S+ P +R
Sbjct: 1665 HFSFSTLPTVSR 1676
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 33.5 bits (75), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 406 DSSNKLICTKSKGSEDQRITQKEHFMTPKHEF-QASLSLKEETEQLLMVENKEDLKCTKQ 464
++ N ICT +GS + +T +E +T K E Q + E TEQL + + +
Sbjct: 1539 ENENTGICTNKRGSSNPLLTTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRP 1598
Query: 465 AVSMSSFPQETR 476
S S+ P +R
Sbjct: 1599 HFSFSTLPTVSR 1610
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 33.5 bits (75), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 406 DSSNKLICTKSKGSEDQRITQKEHFMTPKHEF-QASLSLKEETEQLLMVENKEDLKCTKQ 464
++ N ICT +GS + +T +E +T K E Q + E TEQL + + +
Sbjct: 1610 ENENTGICTNKRGSSNPLLTTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRP 1669
Query: 465 AVSMSSFPQETR 476
S S+ P +R
Sbjct: 1670 HFSFSTLPTVSR 1681
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
Length = 1962
Score = 33.5 bits (75), Expect = 0.48
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 406 DSSNKLICTKSKGSEDQRITQKEHFMTPKHEF-QASLSLKEETEQLLMVENKEDLKCTKQ 464
++ N ICT +GS + +T +E +T K E Q + E TEQL + + +
Sbjct: 1615 ENENTGICTNKRGSSNPLLTTEEANLTEKEEIRQGETLMIEGTEQLKSLSSDSSFCFPRP 1674
Query: 465 AVSMSSFPQETR 476
S S+ P +R
Sbjct: 1675 HFSFSTLPTVSR 1686
>gi|24307963 zinc finger, DHHC-type containing 1 [Homo sapiens]
Length = 485
Score = 33.5 bits (75), Expect = 0.48
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 158 HDCRWLSDCLSHQ-YGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAP 216
H C+WL++C+ + Y + L++V + +L + T ++ + ++ +H +V
Sbjct: 162 HHCKWLNNCVGERNYRLFLHSVASALLGVLLLVLVATYVFVEFFVNPMRLRTNRHFEV-- 219
Query: 217 KYLSFLEKRQKLIQENPEVWFI----RPVSPSLLKILALEATYLL--PLRLALLDEMMSD 270
++ + +VWF+ PV ILAL A +L L ALL ++
Sbjct: 220 ------------LKNHTDVWFVFLPAAPVETQAPAILALAALLILLGLLSTALLGHLLCF 267
Query: 271 LTTLVDGYLNTY 282
L+ L TY
Sbjct: 268 HIYLMWHKLTTY 279
>gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo
sapiens]
Length = 4621
Score = 33.1 bits (74), Expect = 0.62
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 303 ELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQPKKLVTETAGKEEKVKGFLFGKNFRI 362
EL QL++ ++ R+ A+R + Q LL T+ +P K + +E+ +G ++ +
Sbjct: 105 ELTQLREKLREGRD-ASRSLNEHLQALL--TLDEPDKSQGQDL-QEQLAEGCRLAQHL-V 159
Query: 363 DKAPSFTSQDFHGDVNLLKEESLNKQATNPQHLPPTEEGETSEDSSNK--LICTKSKGSE 420
K +D DV + + E + K + P+ + TEE + EDS + + C+ S G
Sbjct: 160 QKLSPENDEDEDEDVQVEEAEKVQKSSA-PREVQKTEESKVPEDSLEECAITCSNSHGPC 218
Query: 421 DQRITQKEHFMT-PKHEFQASLSLKEET 447
D K +T + E ++L + E+
Sbjct: 219 DSNQPHKNIKITFEEDEVNSTLVVDRES 246
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 33.1 bits (74), Expect = 0.62
Identities = 47/206 (22%), Positives = 87/206 (42%), Gaps = 20/206 (9%)
Query: 284 EGSADRLGGTEPTCMELPEELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQP-----K 338
+ AD L E C +L + +QL+ K+ E+A E +NA+ + L+ K
Sbjct: 896 QAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELK 955
Query: 339 KLVTE---TAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHL 395
K + + T K EK K+ +K + T ++ G + + + K+A H
Sbjct: 956 KDIDDLELTLAKVEK------EKHATENKVKNLT-EEMAGLDETIAKLTKEKKALQEAHQ 1008
Query: 396 PPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEFQASL---SLKEETEQLLM 452
++ + ED N L TK+K +Q++ E + + + + L K E + L
Sbjct: 1009 QTLDDLQAEEDKVNTL--TKAKIKLEQQVDDLEGSLEQEKKIRMDLERAKRKLEGDLKLA 1066
Query: 453 VENKEDLKCTKQAVSMSSFPQETRVS 478
E+ D++ KQ + +E +S
Sbjct: 1067 QESTMDIENDKQQLDEKLKKKEFEMS 1092
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 32.7 bits (73), Expect = 0.81
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 11 ELLDEVEQGSVRAKASSVSLHAERTWMEKMKVEDLNVCEPASPAPEAPATSLLNDLKYS- 69
ELL+++E+ + K+ V ++ + ME+++ ++L +PE A+ L+D + S
Sbjct: 1307 ELLEKLEKLFLNGKSVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSE 1366
Query: 70 ---------PSEEEEVTYTVINQFQQ 86
E E T ++N F Q
Sbjct: 1367 KSFFSRDQKQDNETEKTSVMVNSFSQ 1392
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 32.7 bits (73), Expect = 0.81
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 11 ELLDEVEQGSVRAKASSVSLHAERTWMEKMKVEDLNVCEPASPAPEAPATSLLNDLKYS- 69
ELL+++E+ + K+ V ++ + ME+++ ++L +PE A+ L+D + S
Sbjct: 1307 ELLEKLEKLFLNGKSVGVEMNTQNELMERIEEDNLTYQHLLPESPEPSASHALSDYETSE 1366
Query: 70 ---------PSEEEEVTYTVINQFQQ 86
E E T ++N F Q
Sbjct: 1367 KSFFSRDQKQDNETEKTSVMVNSFSQ 1392
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 32.7 bits (73), Expect = 0.81
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 260 RLALLDEMMSDLTTLVDGYLNTYREGSADRLGGTEPTCMELPEELLQLKDFQKQRREKAA 319
R L ++M+S L D L E D L E C +L + +QL+ K+ E+
Sbjct: 872 RKELEEKMVSLLQEKNDLQLQVQAE--QDNLNDAEERCDQLIKNKIQLEAKVKEMNERLE 929
Query: 320 REYRVNAQGLLIRTVLQP-----KKLVTE---TAGKEEKVKGFLFGKNFRIDKAPSFTSQ 371
E +NA+ + L+ KK + + T K EK K+ +K + T +
Sbjct: 930 DEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEK------EKHATENKVKNLT-E 982
Query: 372 DFHGDVNLLKEESLNKQATNPQHLPPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFM 431
+ G ++ + + K+A H ++ + ED N L +KSK +Q++ E +
Sbjct: 983 EMAGLDEIIAKLTKEKKALQEAHQQALDDLQVEEDKVNSL--SKSKVKLEQQVDDLEGSL 1040
Query: 432 TPKHEFQASLSLKEETEQLLMVENKEDLKCTKQAV 466
+ E + + L+ +L + DLK T++++
Sbjct: 1041 --EQEKKVRMDLERAKRKL-----EGDLKLTQESI 1068
>gi|114431248 hypothetical protein LOC205717 [Homo sapiens]
Length = 2245
Score = 32.3 bits (72), Expect = 1.1
Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 38/235 (16%)
Query: 283 REGSADRLGGTEPTCMELPEELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQPKKLVT 342
+ A L G P ++P+E + A N+QG + T+ +P + +
Sbjct: 1163 KPSEASLLEGDPPFKSQIPKE--------SGTGQAEATPNEFNSQGSIEATMERPLEKPS 1214
Query: 343 ETAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHLPPTEEGE 402
+ G +K + PS TS + NL+ + S++ + L PT E
Sbjct: 1215 CSLG----IKTSNASLQDSTSQPPSITSLSVN---NLIHQSSISHPLASCAGLSPTSEQT 1267
Query: 403 TSEDSSNKLICTKSKG------------SEDQRITQ---------KEHFMTPKHEFQASL 441
T + N + + S G S++Q T +E + P HE +
Sbjct: 1268 TVPATVNLTVSSSSYGSQPPGPSLMTEYSQEQLNTMTSTIPNSQIQEPLLKPSHESRKDS 1327
Query: 442 SLKEETEQLLMVENKEDLKCTKQAVSMSSFPQETRVSPSDTFYPIRKTVVSTLPP 496
+ + + LL+ K C + + S +R DT + +VS +PP
Sbjct: 1328 AKRAVQDDLLLSSAKRQKHCQPAPLRLESMSLMSRT--PDTISDQTQMMVSQIPP 1380
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.3 bits (72), Expect = 1.1
Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 14/178 (7%)
Query: 325 NAQGLLIRTVLQPKKLVTETAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEES 384
N Q V + KK++ E GK + V+ L + ++ T QD ++ LKEE
Sbjct: 787 NDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEK-TVQDLKQEIKALKEEI 845
Query: 385 LNKQATNPQHLPPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEFQASLSLK 444
N Q Q L T + ++ N L KG E+Q T K E + L+
Sbjct: 846 GNVQLEKAQQLSITSK---VQELQNLL-----KGKEEQMNTMK----AVLEEKEKDLANT 893
Query: 445 EETEQLLMVENKEDLKCTKQAVSMSSFPQETRVSPSDTFYPIRKTVVSTLPPCPALEK 502
+ Q L EN E LK Q V+ + + + S + + K + L A+ K
Sbjct: 894 GKWLQDLQEEN-ESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLK 950
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 32.3 bits (72), Expect = 1.1
Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 14/178 (7%)
Query: 325 NAQGLLIRTVLQPKKLVTETAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEES 384
N Q V + KK++ E GK + V+ L + ++ T QD ++ LKEE
Sbjct: 787 NDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEK-TVQDLKQEIKALKEEI 845
Query: 385 LNKQATNPQHLPPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEFQASLSLK 444
N Q Q L T + ++ N L KG E+Q T K E + L+
Sbjct: 846 GNVQLEKAQQLSITSK---VQELQNLL-----KGKEEQMNTMK----AVLEEKEKDLANT 893
Query: 445 EETEQLLMVENKEDLKCTKQAVSMSSFPQETRVSPSDTFYPIRKTVVSTLPPCPALEK 502
+ Q L EN E LK Q V+ + + + S + + K + L A+ K
Sbjct: 894 GKWLQDLQEEN-ESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLK 950
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.3 bits (72), Expect = 1.1
Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 14/178 (7%)
Query: 325 NAQGLLIRTVLQPKKLVTETAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEES 384
N Q V + KK++ E GK + V+ L + ++ T QD ++ LKEE
Sbjct: 787 NDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEK-TVQDLKQEIKALKEEI 845
Query: 385 LNKQATNPQHLPPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEFQASLSLK 444
N Q Q L T + ++ N L KG E+Q T K E + L+
Sbjct: 846 GNVQLEKAQQLSITSK---VQELQNLL-----KGKEEQMNTMK----AVLEEKEKDLANT 893
Query: 445 EETEQLLMVENKEDLKCTKQAVSMSSFPQETRVSPSDTFYPIRKTVVSTLPPCPALEK 502
+ Q L EN E LK Q V+ + + + S + + K + L A+ K
Sbjct: 894 GKWLQDLQEEN-ESLKAHVQEVAQHNLKEASSASQFEELEIVLKEKENELKRLEAMLK 950
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 32.0 bits (71), Expect = 1.4
Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 14/209 (6%)
Query: 260 RLALLDEMMSDLTTLVDGYLNTYREGSADRLGGTEPTCMELPEELLQLKDFQKQRREKAA 319
R L ++M+S L D L E D L E C +L + +QL+ K+ E+
Sbjct: 870 RKELEEKMVSLLQEKNDLQLQVQAE--QDNLADAEERCDQLIKNKIQLEAKVKEMNERLE 927
Query: 320 REYRVNAQGLLIRTVLQPK--KLVTETAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDV 377
E +NA+ + L+ + +L + E + K+ +K + T ++ G
Sbjct: 928 DEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLT-EEMAGLD 986
Query: 378 NLLKEESLNKQATNPQHLPPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEF 437
++ + + K+A H ++ + ED N L TK+K +Q++ E + + E
Sbjct: 987 EIIAKLTKEKKALQEAHQQALDDLQAEEDKVNTL--TKAKVKLEQQVDDLEGSL--EQEK 1042
Query: 438 QASLSLKEETEQLLMVENKEDLKCTKQAV 466
+ + L+ +L + DLK T++++
Sbjct: 1043 KVRMDLERAKRKL-----EGDLKLTQESI 1066
>gi|58197556 hypothetical protein LOC200205 [Homo sapiens]
Length = 356
Score = 32.0 bits (71), Expect = 1.4
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 187 LQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPE--VWFIRPVSPS 244
LQ E G+L C +++Q +L KHL + + +R+ ++ +PE VW + P SP
Sbjct: 115 LQEHSEVSGFLLECDSSVQGALQKHLAL------YRIRRKVTVEPHPELRVWAVLPSSPE 168
Query: 245 LLKILALE 252
+L+
Sbjct: 169 ACGAASLQ 176
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 398 TEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEFQASLSLKEETEQLLMVE--- 454
T EGE SE+SS+K+ E + + H TP ++ ++E E+ LM +
Sbjct: 3 TNEGEVSEESSSKV--------EQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKR 54
Query: 455 NKEDLKCTKQAVSMSSFPQETRV 477
KED K K+ + Q+T+V
Sbjct: 55 KKEDKK--KKEATQKVTEQKTKV 75
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 31.6 bits (70), Expect = 1.8
Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 29/207 (14%)
Query: 284 EGSADRLGGTEPTCMELPEELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQP-----K 338
+ A+ L E C +L + +QL+ K+ E+A E +NA+ + L+ K
Sbjct: 898 QAEAEGLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELK 957
Query: 339 KLVTE---TAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHL 395
K + + T K EK K+ +K + T ++ G + + + K+A H
Sbjct: 958 KDIDDLELTLAKVEK------EKHATENKVKNLT-EEMAGLDETIAKLTKEKKALQEAHQ 1010
Query: 396 PPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEFQASL---------SLKEE 446
++ + ED N L TK+K +Q++ E + + + + L LK
Sbjct: 1011 QTLDDLQAEEDKVNTL--TKAKIKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLA 1068
Query: 447 TEQLLMVENKE---DLKCTKQAVSMSS 470
E ++ +EN++ D K K+ +S+
Sbjct: 1069 QESIMDIENEKQQLDEKLKKKEFEISN 1095
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 31.6 bits (70), Expect = 1.8
Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 29/207 (14%)
Query: 284 EGSADRLGGTEPTCMELPEELLQLKDFQKQRREKAAREYRVNAQGLLIRTVLQP-----K 338
+ A+ L E C +L + +QL+ K+ E+A E +NA+ + L+ K
Sbjct: 898 QAEAEGLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELK 957
Query: 339 KLVTE---TAGKEEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHL 395
K + + T K EK K+ +K + T ++ G + + + K+A H
Sbjct: 958 KDIDDLELTLAKVEK------EKHATENKVKNLT-EEMAGLDETIAKLTKEKKALQEAHQ 1010
Query: 396 PPTEEGETSEDSSNKLICTKSKGSEDQRITQKEHFMTPKHEFQASL---------SLKEE 446
++ + ED N L TK+K +Q++ E + + + + L LK
Sbjct: 1011 QTLDDLQAEEDKVNTL--TKAKIKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLA 1068
Query: 447 TEQLLMVENKE---DLKCTKQAVSMSS 470
E ++ +EN++ D K K+ +S+
Sbjct: 1069 QESIMDIENEKQQLDEKLKKKEFEISN 1095
>gi|163792198 latrophilin 3 precursor [Homo sapiens]
Length = 1469
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 21/72 (29%)
Query: 174 LLNNVFDTQVADVL--------QFSMETGGYLPNCI-----------TTLQESLIKHL-- 212
LLNN DT V D L +S+ +G YL NC+ T L++ ++K L
Sbjct: 1206 LLNNARDTSVMDTLPLNGNHGNSYSIASGEYLSNCVQIIDRGYNHNETALEKKILKELTS 1265
Query: 213 QVAPKYLSFLEK 224
P YL+ E+
Sbjct: 1266 NYIPSYLNNHER 1277
>gi|171460914 dynamin 1-like isoform 1 [Homo sapiens]
Length = 736
Score = 31.2 bits (69), Expect = 2.4
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 243 PSLLKILALEATYLLPLRLALLDEMMSDLTTLVDGYLNTYREGSADRLGGTEPTCMELPE 302
P L + T LL RL + +EM+ +L + Y+NT AD G
Sbjct: 458 PKLHDAIVEVVTCLLRKRLPVTNEMVHNLVAIELAYINTKHPDFADACG----------- 506
Query: 303 ELLQLKDFQKQRREKAARE 321
L + ++QRR + ARE
Sbjct: 507 --LMNNNIEEQRRNRLARE 523
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,035,415
Number of Sequences: 37866
Number of extensions: 909824
Number of successful extensions: 3165
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 3141
Number of HSP's gapped (non-prelim): 85
length of query: 514
length of database: 18,247,518
effective HSP length: 107
effective length of query: 407
effective length of database: 14,195,856
effective search space: 5777713392
effective search space used: 5777713392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.