Guide to the Human Genome
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Name: C1orf69 Sequence: fasta or formatted (356aa) NCBI GI: 58197556
Description:

hypothetical protein LOC200205

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         45           3
 C cysteine            1.7          6           1
 D aspartate           3.4         12           1
 E glutamate           3.9         14           1
 F phenylalanine       2.5          9           1
 G glycine            11.0         39           2
 H histidine           2.8         10           2
 I isoleucine          2.5          9           1
 K lysine              2.2          8           1
 L leucine            12.9         46           2
 M methionine          1.1          4           1
 N asparagine          1.4          5           1
 P proline             8.4         30           2
 Q glutamine           3.4         12           1
 R arginine            8.7         31           2
 S serine              5.3         19           2
 T threonine           5.1         18           1
 V valine              6.5         23           1
 W tryptophan          2.5          9           2
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC200205 
PVRL4                 0.018   poliovirus receptor-related 4 
SRCAP                 0.016   Snf2-related CBP activator protein 
ADAMTS13              0.013   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.013   ADAM metallopeptidase with thrombospondin type 1 mot...
EXD1                  0.010   exonuclease 3'-5' domain containing 1 
LOC729627             0.010   hypothetical protein LOC729627 
FLJ46210              0.010   hypothetical protein LOC389152 
LOC100132713          0.009   PREDICTED: similar to hCG1654128 
LOC100132713          0.009   PREDICTED: similar to hCG1654128 
LOC100287121          0.009   PREDICTED: hypothetical protein 
LOC100132713          0.009   PREDICTED: similar to hCG1654128 
LOC100287121          0.009   PREDICTED: hypothetical protein XP_002342511 
ATP13A2               0.009   ATPase type 13A2 isoform 3 
COL17A1               0.009   alpha 1 type XVII collagen 
LOC100292934          0.009   PREDICTED: hypothetical protein 
FNDC1                 0.009   fibronectin type III domain containing 1 
NDOR1                 0.009   NADPH dependent diflavin oxidoreductase 1 isoform c...
NDOR1                 0.009   NADPH dependent diflavin oxidoreductase 1 isoform a...
NDOR1                 0.009   NADPH dependent diflavin oxidoreductase 1 isoform b [...
LOC389151             0.007   hypothetical protein LOC389151 
BBC3                  0.007   BCL2 binding component 3 isoform 4 
SNX16                 0.007   sorting nexin 16 isoform a 
SNX16                 0.007   sorting nexin 16 isoform a 
KIR3DL2               0.007   killer cell immunoglobulin-like receptor, three dom...
LOC100133915          0.007   PREDICTED: hypothetical protein 
BHLHE41               0.007   basic helix-loop-helix domain containing, class B, 3...
USP31                 0.006   ubiquitin specific peptidase 31 
LOC100291868          0.006   PREDICTED: hypothetical protein XP_002345322 
LOC100290196          0.006   PREDICTED: hypothetical protein XP_002347647 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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