Guide to the Human Genome
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Name: CABC1 Sequence: fasta or formatted (647aa) NCBI GI: 34147522
Description:

chaperone, ABC1 activity of bc1 complex like precursor

Referenced in:

Oxidative Phosphorylation
Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         69           3
 C cysteine            1.4          9           1
 D aspartate           4.6         30           2
 E glutamate           7.6         49           2
 F phenylalanine       6.2         40           2
 G glycine             7.3         47           2
 H histidine           3.2         21           1
 I isoleucine          4.3         28           2
 K lysine              5.1         33           2
 L leucine             9.6         62           2
 M methionine          3.1         20           2
 N asparagine          3.2         21           2
 P proline             5.4         35           3
 Q glutamine           4.9         32           2
 R arginine            6.3         41           2
 S serine              6.2         40           2
 T threonine           3.2         21           2
 V valine              5.1         33           1
 W tryptophan          0.3          2           1
 Y tyrosine            2.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chaperone, ABC1 activity of bc1 complex like precurs... 
ADCK4                 0.440   aarF domain containing kinase 4 isoform a 
ADCK4                 0.383   aarF domain containing kinase 4 isoform b 
ADCK1                 0.057   aarF domain containing kinase 1 isoform a 
ADCK5                 0.043   aarF domain containing kinase 5 
ADCK1                 0.039   aarF domain containing kinase 1 isoform b 
NUP214                0.009   nucleoporin 214kDa 
ORC1L                 0.008   origin recognition complex, subunit 1 
WBP2                  0.006   WW domain binding protein 2 
LAG3                  0.006   lymphocyte-activation protein 3 precursor 
KNDC1                 0.006   kinase non-catalytic C-lobe domain (KIND) containin...
PRR12                 0.006   proline rich 12 
CDC7                  0.006   cell division cycle 7 
CDC7                  0.006   cell division cycle 7 
CDC7                  0.006   cell division cycle 7 
KIAA1217              0.006   sickle tail isoform 3 
KIAA1217              0.006   sickle tail isoform 2 
KIAA1217              0.006   sickle tail isoform 1 
ALPK3                 0.006   alpha-kinase 3 
TNRC18                0.006   trinucleotide repeat containing 18 
SPOCD1                0.006   SPOC domain containing 1 
LOC730060             0.005   PREDICTED: hypothetical protein 
LOC730060             0.005   PREDICTED: hypothetical protein 
LOC730060             0.005   PREDICTED: hypothetical protein 
COL16A1               0.005   alpha 1 type XVI collagen precursor 
MKI67                 0.004   antigen identified by monoclonal antibody Ki-67 iso...
MKI67                 0.004   antigen identified by monoclonal antibody Ki-67 iso...
VEGFA                 0.004   vascular endothelial growth factor A isoform f precu...
VEGFA                 0.004   vascular endothelial growth factor A isoform e precu...
VEGFA                 0.004   vascular endothelial growth factor A isoform d precu...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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