Guide to the Human Genome
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Name: SFTPB Sequence: fasta or formatted (381aa) NCBI GI: 33943099
Description:

surfactant, pulmonary-associated protein B

Referenced in:

Lung

Other entries for this name:
alt mRNA [381aa] surfactant, pulmonary-associated protein B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         27           2
 C cysteine            6.6         25           1
 D aspartate           5.2         20           2
 E glutamate           5.0         19           1
 F phenylalanine       1.8          7           1
 G glycine             5.8         22           2
 H histidine           2.6         10           1
 I isoleucine          3.4         13           1
 K lysine              2.9         11           1
 L leucine            15.2         58           5
 M methionine          3.1         12           1
 N asparagine          1.6          6           1
 P proline             8.7         33           1
 Q glutamine           8.4         32           2
 R arginine            4.2         16           1
 S serine              5.2         20           2
 T threonine           4.2         16           2
 V valine              5.8         22           2
 W tryptophan          2.1          8           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   surfactant, pulmonary-associated protein B 
SFTPB                 1.000   surfactant, pulmonary-associated protein B 
PSAP                  0.099   prosaposin isoform a preproprotein 
PSAP                  0.097   prosaposin isoform c preproprotein 
PSAP                  0.095   prosaposin isoform b preproprotein 
PSAPL1                0.063   prosaposin-like protein 1 
DGKK                  0.015   diacylglycerol kinase kappa 
AOAH                  0.015   acyloxyacyl hydrolase precursor 
PAPPA                 0.010   pregnancy-associated plasma protein A preproprotein ...
TRIM25                0.009   tripartite motif-containing 25 
PPM1E                 0.009   protein phosphatase 1E 
ADAMTS6               0.009   ADAM metallopeptidase with thrombospondin type 1 mot...
ETV6                  0.009   ets variant 6 
SLC16A2               0.009   solute carrier family 16, member 2 
LRP10                 0.009   low density lipoprotein receptor-related protein 10 ...
ANKRD34A              0.009   ankyrin repeat domain 34 
LOC284297             0.008   hypothetical protein LOC284297 
RICH2                 0.008   Rho GTPase-activating protein RICH2 
BAI1                  0.008   brain-specific angiogenesis inhibitor 1 precursor [...
AHDC1                 0.008   AT hook, DNA binding motif, containing 1 
SPAST                 0.006   spastin isoform 1 
MLL4                  0.006   myeloid/lymphoid or mixed-lineage leukemia 4 
ALPK3                 0.006   alpha-kinase 3 
GGT6                  0.006   gamma-glutamyltransferase 6 isoform a 
GGT6                  0.006   gamma-glutamyltransferase 6 isoform b 
GNAS                  0.006   GNAS complex locus alex 
SPAST                 0.006   spastin isoform 2 
VIPR1                 0.006   vasoactive intestinal peptide receptor 1 
ZNF827                0.006   zinc finger protein 827 
SGK269                0.006   NKF3 kinase family member 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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