Guide to the Human Genome
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Name: EGFLAM Sequence: fasta or formatted (152aa) NCBI GI: 33469937
Description:

EGF-like, fibronectin type III and laminin G domains isoform 4

Referenced in:

Fibronectin Family

Other entries for this name:
alt prot [1009aa] EGF-like, fibronectin type III and laminin G domains isoform 1
alt prot [775aa] EGF-like, fibronectin type III and laminin G domains isoform 2
alt prot [375aa] EGF-like, fibronectin type III and laminin G domains isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          9           1
 C cysteine            1.3          2           1
 D aspartate           7.2         11           2
 E glutamate           1.3          2           1
 F phenylalanine       3.3          5           1
 G glycine            13.2         20           2
 H histidine           2.6          4           1
 I isoleucine          5.3          8           1
 K lysine              5.3          8           1
 L leucine             8.6         13           3
 M methionine          4.6          7           2
 N asparagine          5.9          9           1
 P proline             2.0          3           1
 Q glutamine           2.0          3           1
 R arginine            7.2         11           1
 S serine              7.9         12           1
 T threonine           5.3          8           2
 V valine              6.6         10           1
 W tryptophan          1.3          2           1
 Y tyrosine            3.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EGF-like, fibronectin type III and laminin G domains... 
EGFLAM                1.000   EGF-like, fibronectin type III and laminin G domains...
EGFLAM                1.000   EGF-like, fibronectin type III and laminin G domains...
EGFLAM                1.000   EGF-like, fibronectin type III and laminin G domains...
HSPG2                 0.295   heparan sulfate proteoglycan 2 
AGRN                  0.201   agrin 
LAMA2                 0.153   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.153   laminin alpha 2 subunit isoform a precursor 
EYS                   0.128   eyes shut homolog isoform 1 
NRXN1                 0.128   neurexin 1 isoform alpha1 precursor 
LAMA4                 0.122   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.122   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.122   laminin, alpha 4 isoform 2 precursor 
NRXN1                 0.118   neurexin 1 isoform alpha2 precursor 
NRXN2                 0.118   neurexin 2 isoform alpha-2 precursor 
LAMA1                 0.115   laminin, alpha 1 precursor 
LAMA3                 0.111   laminin alpha 3 subunit isoform 1 
LAMA3                 0.111   laminin alpha 3 subunit isoform 4 
LAMA3                 0.111   laminin alpha 3 subunit isoform 3 
LAMA3                 0.111   laminin alpha 3 subunit isoform 2 
NRXN3                 0.111   neurexin 3 isoform 1 precursor 
NRXN2                 0.108   neurexin 2 isoform alpha-1 precursor 
CNTNAP4               0.108   cell recognition protein CASPR4 isoform 2 
CNTNAP4               0.108   cell recognition protein CASPR4 isoform 1 
CNTNAP1               0.108   contactin associated protein 1 precursor 
FAT4                  0.104   FAT tumor suppressor homolog 4 
LOC643827             0.097   PREDICTED: similar to cell recognition molecule CAS...
LOC389722             0.097   PREDICTED: hypothetical protein LOC389722 isoform 1...
CNTNAP3               0.097   cell recognition molecule CASPR3 
FAT1                  0.094   FAT tumor suppressor 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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