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Search of human proteins with 32698752
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32698752 hypothetical protein LOC63939 [Homo sapiens]
(383 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32698752 hypothetical protein LOC63939 [Homo sapiens] 774 0.0
gi|27734861 hypothetical protein LOC222826 [Homo sapiens] 48 1e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.010
gi|239753288 PREDICTED: similar to Putative PGM5-like protein 1 ... 35 0.11
gi|56606114 trichohyalin-like 1 [Homo sapiens] 35 0.11
gi|239741729 PREDICTED: similar to Putative PGM5-like protein 1 ... 34 0.25
gi|50345292 hematological and neurological expressed 1 isoform 3... 34 0.25
gi|7705877 hematological and neurological expressed 1 isoform 1 ... 34 0.25
gi|133922582 zinc finger protein 358 [Homo sapiens] 33 0.33
gi|219802034 nuclear factor related to kappaB binding protein is... 33 0.43
gi|23346420 nuclear factor related to kappaB binding protein iso... 33 0.43
gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo s... 33 0.43
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 33 0.56
gi|154090979 hypothetical protein LOC57481 [Homo sapiens] 33 0.56
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 32 0.73
gi|122937271 WAS protein homolog associated with actin, golgi me... 32 0.73
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 32 0.73
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 32 0.73
gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens] 32 0.96
gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens] 32 0.96
gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens] 32 0.96
gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens] 32 0.96
gi|125656165 THO complex 2 [Homo sapiens] 32 1.3
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 32 1.3
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.3
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.3
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 32 1.3
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 32 1.3
gi|124028529 symplekin [Homo sapiens] 31 1.6
gi|27883882 P18SRP protein [Homo sapiens] 31 1.6
>gi|32698752 hypothetical protein LOC63939 [Homo sapiens]
Length = 383
Score = 774 bits (1999), Expect = 0.0
Identities = 383/383 (100%), Positives = 383/383 (100%)
Query: 1 MNAGPSWNKVQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKR 60
MNAGPSWNKVQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKR
Sbjct: 1 MNAGPSWNKVQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKR 60
Query: 61 NPLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAE 120
NPLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAE
Sbjct: 61 NPLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAE 120
Query: 121 EIDPVYFDLHPGQGHTKPEYYYPNFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGK 180
EIDPVYFDLHPGQGHTKPEYYYPNFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGK
Sbjct: 121 EIDPVYFDLHPGQGHTKPEYYYPNFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGK 180
Query: 181 YIDRLIQLEWLQVQTVQCEKAKGGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQEG 240
YIDRLIQLEWLQVQTVQCEKAKGGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQEG
Sbjct: 181 YIDRLIQLEWLQVQTVQCEKAKGGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQEG 240
Query: 241 ASKSGPSRKKAFHHEEIHPSHYAFETSPRPIDVLGGTRFCSQRQTLEMRTEEKKKKSSKS 300
ASKSGPSRKKAFHHEEIHPSHYAFETSPRPIDVLGGTRFCSQRQTLEMRTEEKKKKSSKS
Sbjct: 241 ASKSGPSRKKAFHHEEIHPSHYAFETSPRPIDVLGGTRFCSQRQTLEMRTEEKKKKSSKS 300
Query: 301 TKLQRWDLSGSGSSSKVETSGHIRVPKQAAVILDSADSCKASKTQAHAHPRKKGKAESCG 360
TKLQRWDLSGSGSSSKVETSGHIRVPKQAAVILDSADSCKASKTQAHAHPRKKGKAESCG
Sbjct: 301 TKLQRWDLSGSGSSSKVETSGHIRVPKQAAVILDSADSCKASKTQAHAHPRKKGKAESCG 360
Query: 361 HATVSSEKKLKTNGVKQNTYKLK 383
HATVSSEKKLKTNGVKQNTYKLK
Sbjct: 361 HATVSSEKKLKTNGVKQNTYKLK 383
>gi|27734861 hypothetical protein LOC222826 [Homo sapiens]
Length = 508
Score = 48.1 bits (113), Expect = 1e-05
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 85 IKENADEDSASDLSDSERI-PIPPSPLTPPDLNLRAEEIDPVYFDLHPGQGHTKPEYYYP 143
++EN ++S DLS++E+ S DLNL+ E I V P + YP
Sbjct: 195 VEENFTDES--DLSENEKTNDTLLSYFKKVDLNLKPETIKNVE---EPFTEEPNEVFPYP 249
Query: 144 NFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGKYIDRLIQLEWLQVQTVQCEKAK 202
+FLP PFS+ DL ++A L ++N V + I RL++LE LQ T+Q E+ +
Sbjct: 250 DFLPPPFSALDLHNLA-LSKSDNWKVTVDPAETSVEHLITRLLELERLQHMTIQKERPR 307
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.5 bits (88), Expect = 0.010
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 13 SKNSSGKRQSKSQVPHASSQPRSSLTAVTQPT---EEKLKESISPE---ARRKRNPLGSR 66
S +SSG S S+ QP +L V PT +E ++E PE A+RKR S
Sbjct: 2552 SSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSS 2611
Query: 67 CQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSP 109
+S + S ++ S+S S S P P P
Sbjct: 2612 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
Score = 30.4 bits (67), Expect = 2.8
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 15 NSSGKRQSKSQVPH----ASSQPRSSLTAVTQPTEEKLKESISPEARRKRNPLGSRCQGA 70
+SS + ++ Q P + S P + +T E ES + R PLG R +
Sbjct: 1481 DSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSR-- 1538
Query: 71 SGNKLFLDFQSMKIIKENADEDSASDLSDSERIPI 105
SG+ LD + +E ++ DS+ D R P+
Sbjct: 1539 SGSSQELDVKPSASPQERSESDSSPDSKAKTRTPL 1573
>gi|239753288 PREDICTED: similar to Putative PGM5-like protein 1
[Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.11
Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 28/168 (16%)
Query: 69 GASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEEIDPVYFD 128
G +++F D + +D ++ RIP+ P P E+ P
Sbjct: 65 GRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAP------CEDRRPT--G 116
Query: 129 LHPGQGHTKPEYYYPNFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGKYIDRLIQL 188
L GQ Y PNF+ S SS DLRD + +T V G G+Y R
Sbjct: 117 LFQGQ-----RSYPPNFIRSALSSVDLRD------RQGRTTGV----GSDGRYFGRTA-- 159
Query: 189 EWLQVQTVQCEKAKGGKARPPTAPGTSGALKSPGRSKLIASALSKPLP 236
++V A G R P A + A SPG AS S P
Sbjct: 160 --VEVGGPMA-AANGASVRMPLASRRAAAAPSPGPCPPAASGPSWEAP 204
>gi|56606114 trichohyalin-like 1 [Homo sapiens]
Length = 904
Score = 35.0 bits (79), Expect = 0.11
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 287 EMRTEEKKKKSSKSTKLQRWDLSGSGSSSKVETSGHIRVPKQAAVILDSADSCKASKT-- 344
E+RTE++K + + LQR D S + E + R P Q DS D C+ T
Sbjct: 277 EVRTEKEKHSNIQEPPLQREDEPSSQHADLPEQAA-ARSPSQTQKSTDSKDVCRMFDTQE 335
Query: 345 ------QAHAHPRKKGKAESCGHATVSSEKKLKT 372
Q A + G+ E G + + EK+ +T
Sbjct: 336 PGKDADQTPAKTKNLGEPEDYGRTSETQEKECET 369
>gi|239741729 PREDICTED: similar to Putative PGM5-like protein 1
[Homo sapiens]
Length = 259
Score = 33.9 bits (76), Expect = 0.25
Identities = 51/206 (24%), Positives = 73/206 (35%), Gaps = 42/206 (20%)
Query: 69 GASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEEIDPVYFD 128
G +++F D + +D ++ RIP+ P P E+ P
Sbjct: 65 GRRSSRIFQDSSLDSLRPREPQQDRPGGAAEGSRIPVRTVPTAP------CEDRRPT--G 116
Query: 129 LHPGQGHTKPEYYYPNFLPSPFSSWDLRDMALLLNAENKTEAVPRVGGLLGKY------- 181
L GQ Y PNF+ S SS DLRD + +T V G G+
Sbjct: 117 LFQGQ-----RSYPPNFIRSALSSVDLRD------RQGRTTGVGSDGRYFGRTAVEVGGP 165
Query: 182 ------IDRLI--QLEWLQVQTVQC----EKAKGG----KARPPTAPGTSGALKSPGRSK 225
I RLI Q L V C KA GG + P PG +K +
Sbjct: 166 MAAANGIGRLIIGQNGILSTPAVSCIIRKIKAAGGIILTASHCPGGPGGEFGVKFNVANG 225
Query: 226 LIASALSKPLPHQEGASKSGPSRKKA 251
++ +SK H +G P ++A
Sbjct: 226 VLNGNISKTPVHSKGFCLGPPDTQRA 251
>gi|50345292 hematological and neurological expressed 1 isoform 3
[Homo sapiens]
Length = 108
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 49 KESISPEARRKRNPLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPS 108
+E + ++RN + +SG+ FLD + I EN D D L SE P+P +
Sbjct: 28 REDLESSGLQRRNS----SEASSGD--FLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAA 81
Query: 109 PLTPP 113
P+ P
Sbjct: 82 PVPSP 86
>gi|7705877 hematological and neurological expressed 1 isoform 1
[Homo sapiens]
Length = 154
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 49 KESISPEARRKRNPLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPS 108
+E + ++RN + +SG+ FLD + I EN D D L SE P+P +
Sbjct: 74 REDLESSGLQRRNS----SEASSGD--FLDLKGEGDIHENVDTDLPGSLGQSEEKPVPAA 127
Query: 109 PLTPP 113
P+ P
Sbjct: 128 PVPSP 132
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 33.5 bits (75), Expect = 0.33
Identities = 53/225 (23%), Positives = 79/225 (35%), Gaps = 33/225 (14%)
Query: 80 QSMKIIKENADEDSAS---DLSDSERIPIPPSPLTPPDLNLRAEEIDPVYFDLHPGQGHT 136
+ ++ + E D DS + D + + P P P DLN E++DP Y DL P
Sbjct: 13 KGLRPVYEELDSDSEDLDPNPEDLDPVSEDPEP-DPEDLNTVPEDVDPSYEDLEPVSEDL 71
Query: 137 KPEYYYPNFLPSP----FSSWDL-----RDMALLL--NAENKTEAVPRVGGLLGKYIDRL 185
P+ P P SS+DL + L+L N++ + P+V +
Sbjct: 72 DPDAEAPGSEPQDPDPMSSSFDLDPDVIGPVPLILDPNSDTLSPGDPKVDPISSGL---- 127
Query: 186 IQLEWLQVQTVQCEKAKGGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQEGASKSG 245
T Q P +P + GR+ +S LS+ H+ S
Sbjct: 128 -------TATPQVLATSPAVLPAPASPPRPFSCPDCGRAFRRSSGLSQ---HRRTHSGEK 177
Query: 246 PSR----KKAFHHEEIHPSHYAFETSPRPIDVLGGTRFCSQRQTL 286
P R K+F H H T RP + R TL
Sbjct: 178 PYRCPDCGKSFSHGATLAQHRGIHTGARPYQCAACGKAFGWRSTL 222
>gi|219802034 nuclear factor related to kappaB binding protein
isoform 1 [Homo sapiens]
Length = 1299
Score = 33.1 bits (74), Expect = 0.43
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 56 ARRKRNPLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDL 115
A + R L + + S K S+K++ E S LSDS P P +P+TP
Sbjct: 669 AAKARKALQQKPKPPSKVKSSSKESSIKVLSSGPSEQSQMSLSDSSMPPTPVTPVTPTTP 728
Query: 116 NLRAEEIDP 124
L A I P
Sbjct: 729 ALPAIPISP 737
>gi|23346420 nuclear factor related to kappaB binding protein
isoform 2 [Homo sapiens]
Length = 1324
Score = 33.1 bits (74), Expect = 0.43
Identities = 22/69 (31%), Positives = 30/69 (43%)
Query: 56 ARRKRNPLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDL 115
A + R L + + S K S+K++ E S LSDS P P +P+TP
Sbjct: 694 AAKARKALQQKPKPPSKVKSSSKESSIKVLSSGPSEQSQMSLSDSSMPPTPVTPVTPTTP 753
Query: 116 NLRAEEIDP 124
L A I P
Sbjct: 754 ALPAIPISP 762
>gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo
sapiens]
Length = 770
Score = 33.1 bits (74), Expect = 0.43
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 287 EMRTEEKKKKSSKSTKLQRWDLSGSGSSSKVETSGHIRVPKQAAVILDSADSCKASKTQA 346
E R ++K++KS+ S+ + D S S SSS +SGH R K +S+ S + ++A
Sbjct: 465 EKRLKKKRRKSTSSSSVSSADESVSSSSSS-SSSGHKRHKKHKRNRSESSRSSRRHSSRA 523
Query: 347 HAHPRKKGKAESC 359
++ + + + C
Sbjct: 524 SSNQIDQNRKDEC 536
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 32.7 bits (73), Expect = 0.56
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 289 RTEEKKKKSSKSTKLQRWDLSGSGSSSKVETSGHIRVPKQAAVILDSADSCKASKTQAHA 348
+ + KKKK KS + S S SSS +S + ++ +S + K K Q
Sbjct: 237 KKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSS---ESESNNKEKKIQ--- 290
Query: 349 HPRKKGKAESC-GHATVSSEKKLKT 372
RKK K C GH SE+K K+
Sbjct: 291 --RKKRKKNKCSGHNNSDSEEKDKS 313
>gi|154090979 hypothetical protein LOC57481 [Homo sapiens]
Length = 1709
Score = 32.7 bits (73), Expect = 0.56
Identities = 57/265 (21%), Positives = 94/265 (35%), Gaps = 38/265 (14%)
Query: 33 PRSSLTAVTQPTEEKLKESISPEARRKRNPLGSRCQGASGNKLFLDFQSMKIIKENADED 92
PR S ++T P ++ ES + E PL RC + + D
Sbjct: 1019 PRYSPQSLTDPQIRQISESTAVEEGTYVEPLPPRCLSQPSER-----------PKFLDSM 1067
Query: 93 SASDLSDSERIPIPPSPLTPPDLNLRAEEIDPVYFDLHPGQGHTKPEYYYPNFLPSPFSS 152
S S S P P +PP + + EE+ HP + + LP S
Sbjct: 1068 STSAEWSSPVAPTPSKYTSPPWVTPKFEEL--YQLSAHPESTTVEEDISKEQLLPRHLSQ 1125
Query: 153 WDLRDMALLLNAENKTEAVPR-VGG--LLGKYIDRLIQLEWLQVQTVQCEK----AKGGK 205
+ + L++ + A+ + G L +Y + ++ +Q T + EK K
Sbjct: 1126 LTVGNKVQQLSSNFERAAIEADISGSPLPPQYATQFLKRSKVQEMTSRLEKMAVEGTSNK 1185
Query: 206 ARPPTAP-------------GTSGALK-----SPGRSKLIASALSKPLPHQEGASKSGPS 247
+ P P S ALK +P L + +LSKP + S SG +
Sbjct: 1186 SPIPRRPTQSFVKFMAQQIFSESSALKRGSDVAPLPPNLPSKSLSKPEVKHQVFSDSGSA 1245
Query: 248 RKKAFHHEEIHPSHYAFETSPRPID 272
K ++ P + ++ RP D
Sbjct: 1246 NPKGGISSKMLPMKHPLQSLGRPED 1270
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 32.3 bits (72), Expect = 0.73
Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 5/136 (3%)
Query: 217 ALKSPGRSKLIASALSKPLPHQEGASKSGPSRKKAFHHEEIHPSHYAFETSPRPIDVLGG 276
A SPG ++ +KPL H S+ GP + + PS + P P
Sbjct: 527 ASSSPGATEPFTFGNTKPLSHF--VSEPGPQKMPSMPTTSRQPSLLHYLQQPTPTQASSA 584
Query: 277 TRFCSQRQTLEMRTEEKKKKSS---KSTKLQRWDLSGSGSSSKVETSGHIRVPKQAAVIL 333
T + TL+++ ++++++ S LQ+ V + +P+Q L
Sbjct: 585 TASSTATATLQLQQQQQQQQQQPDHSSFLLQQMMQQPQRFQRSVASDSMPALPRQGCCHL 644
Query: 334 DSADSCKASKTQAHAH 349
+ S +S H H
Sbjct: 645 FAWTSAASSVKPQHQH 660
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 32.3 bits (72), Expect = 0.73
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 11 QHSKNSSGKRQSKSQVPHASSQ----PRSSLTAVTQPTEEKLKESISPEARRKRNPLGSR 66
Q +N+SG +P SQ P S +V P+ K + EA ++P +
Sbjct: 552 QSVRNTSGSEPVAPNLPSDLSQQMCLPASHAVSVIHPSSRKTRGVPLSEAGNVKSP---K 608
Query: 67 CQGASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPP 113
CQ GN + Q + + S+ +LS +PP P PP
Sbjct: 609 CQNCHGN---IPVQVFVPVGDQTHSKSSEELS------LPPPPPPPP 646
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 32.3 bits (72), Expect = 0.73
Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 25/183 (13%)
Query: 201 AKGGKARPPT----APGTSGALKSPGRSKLIA--SALSKPLPHQEG-ASKSGPSRKKAFH 253
A GG+AR T G+ AL S S+ A S PLP ++ SGP +A
Sbjct: 63 AGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA-- 120
Query: 254 HEEIHPSHYAFETSPRPIDVLGGTRFCSQRQTLEMRTEEKKKKSSKSTKLQRWDLSGSGS 313
+ +G + R R EK+KK S+ + S S
Sbjct: 121 --------------RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQE 166
Query: 314 SSKVETSGHIRVPKQAAVILDSADSCKASKTQAHAHP--RKKGKAESCGHATVSSEKKLK 371
SK + R ++ S+ S +S + + + +K+GK + KKLK
Sbjct: 167 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 226
Query: 372 TNG 374
G
Sbjct: 227 KKG 229
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 32.3 bits (72), Expect = 0.73
Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 25/183 (13%)
Query: 201 AKGGKARPPT----APGTSGALKSPGRSKLIA--SALSKPLPHQEG-ASKSGPSRKKAFH 253
A GG+AR T G+ AL S S+ A S PLP ++ SGP +A
Sbjct: 63 AGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA-- 120
Query: 254 HEEIHPSHYAFETSPRPIDVLGGTRFCSQRQTLEMRTEEKKKKSSKSTKLQRWDLSGSGS 313
+ +G + R R EK+KK S+ + S S
Sbjct: 121 --------------RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQE 166
Query: 314 SSKVETSGHIRVPKQAAVILDSADSCKASKTQAHAHP--RKKGKAESCGHATVSSEKKLK 371
SK + R ++ S+ S +S + + + +K+GK + KKLK
Sbjct: 167 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 226
Query: 372 TNG 374
G
Sbjct: 227 KKG 229
>gi|183396783 BCL-6 interacting corepressor isoform a [Homo sapiens]
Length = 1721
Score = 32.0 bits (71), Expect = 0.96
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 10 VQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKRNPLGSRCQG 69
V S +S+G+ S S P+A++ + + + T ++ P A ++ + +G
Sbjct: 557 VSGSVSSAGRPASASPAPNANADGTKTSRSSVETTPSVIQHVGQPPATPAKHSSSTSSKG 616
Query: 70 ASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEE---IDPVY 126
A + F++ EN S+ LS +E PP P L A E + P+
Sbjct: 617 AKASNPEPSFKA----NENGLPPSSIFLSPNEAFRSPPIPYPRSYLPYPAPEGIAVSPL- 671
Query: 127 FDLHPGQGHTKPEYYYPNFLPS 148
LH G+G P Y +P LP+
Sbjct: 672 -SLH-GKG---PVYPHPVLLPN 688
>gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens]
Length = 1755
Score = 32.0 bits (71), Expect = 0.96
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 10 VQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKRNPLGSRCQG 69
V S +S+G+ S S P+A++ + + + T ++ P A ++ + +G
Sbjct: 557 VSGSVSSAGRPASASPAPNANADGTKTSRSSVETTPSVIQHVGQPPATPAKHSSSTSSKG 616
Query: 70 ASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEE---IDPVY 126
A + F++ EN S+ LS +E PP P L A E + P+
Sbjct: 617 AKASNPEPSFKA----NENGLPPSSIFLSPNEAFRSPPIPYPRSYLPYPAPEGIAVSPL- 671
Query: 127 FDLHPGQGHTKPEYYYPNFLPS 148
LH G+G P Y +P LP+
Sbjct: 672 -SLH-GKG---PVYPHPVLLPN 688
>gi|183396785 BCL-6 interacting corepressor isoform b [Homo sapiens]
Length = 1703
Score = 32.0 bits (71), Expect = 0.96
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 10 VQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKRNPLGSRCQG 69
V S +S+G+ S S P+A++ + + + T ++ P A ++ + +G
Sbjct: 557 VSGSVSSAGRPASASPAPNANADGTKTSRSSVETTPSVIQHVGQPPATPAKHSSSTSSKG 616
Query: 70 ASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEE---IDPVY 126
A + F++ EN S+ LS +E PP P L A E + P+
Sbjct: 617 AKASNPEPSFKA----NENGLPPSSIFLSPNEAFRSPPIPYPRSYLPYPAPEGIAVSPL- 671
Query: 127 FDLHPGQGHTKPEYYYPNFLPS 148
LH G+G P Y +P LP+
Sbjct: 672 -SLH-GKG---PVYPHPVLLPN 688
>gi|21071037 BCL-6 interacting corepressor isoform a [Homo sapiens]
Length = 1721
Score = 32.0 bits (71), Expect = 0.96
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 10 VQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKRNPLGSRCQG 69
V S +S+G+ S S P+A++ + + + T ++ P A ++ + +G
Sbjct: 557 VSGSVSSAGRPASASPAPNANADGTKTSRSSVETTPSVIQHVGQPPATPAKHSSSTSSKG 616
Query: 70 ASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEE---IDPVY 126
A + F++ EN S+ LS +E PP P L A E + P+
Sbjct: 617 AKASNPEPSFKA----NENGLPPSSIFLSPNEAFRSPPIPYPRSYLPYPAPEGIAVSPL- 671
Query: 127 FDLHPGQGHTKPEYYYPNFLPS 148
LH G+G P Y +P LP+
Sbjct: 672 -SLH-GKG---PVYPHPVLLPN 688
>gi|125656165 THO complex 2 [Homo sapiens]
Length = 1593
Score = 31.6 bits (70), Expect = 1.3
Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 22/162 (13%)
Query: 9 KVQHSKNSSGKRQSKSQVPHASSQPRSSLTAVTQPTEEKLKESISPEARRKRNPLGSRCQ 68
K + R++K + P S + + + +EK K ++ P A K R +
Sbjct: 1304 KEERPNKDEKARETKERTPK-SDKEKEKFKKEEKAKDEKFKTTV-PNAESKSTQEREREK 1361
Query: 69 GASGNKLFLDFQSMKIIKENADEDSASDLSDSERIPIPPSPLTPPDLNLRAEEIDPVYFD 128
S + D KEN + +S S + P+P S + P+ + +I D
Sbjct: 1362 EPSRER---DIAKEMKSKENVKGGEKTPVSGSLKSPVPRSDIPEPEREQKRRKI-----D 1413
Query: 129 LHPGQGHT------------KPEYYYPNFLPSPFSSWDLRDM 158
HP H+ Y N P P S R+M
Sbjct: 1414 THPSPSHSSTVKDSLIELKESSAKLYINHTPPPLSKSKEREM 1455
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 31.6 bits (70), Expect = 1.3
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 16/114 (14%)
Query: 52 ISPEARRKRN----------PLGSRCQGASGNKLFLDFQSMKIIKENADEDSASDLSD-S 100
++P+ +R N P G R QG L D+ K A + + + D
Sbjct: 314 LAPDKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFC 373
Query: 101 ERIP-IPPSPLTPPDLNLRAEEIDPVYFDLHPGQGHTKPEYYYPNFLPSPFSSW 153
+R P + PSP PP R P D P P Y P P P+++W
Sbjct: 374 QRFPALEPSPRQPPARAPRPSPDLPAPLDACPWA----PPVYAPPAAPGPYAAW 423
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 203 GGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQEGASKSGPSRKKAFHHEE-IHPSH 261
G RPP P PG++ +A + + EGA GP+ A H I SH
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISH 442
Query: 262 YAFE 265
+ E
Sbjct: 443 QSVE 446
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 203 GGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQEGASKSGPSRKKAFHHEE-IHPSH 261
G RPP P PG++ +A + + EGA GP+ A H I SH
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISH 442
Query: 262 YAFE 265
+ E
Sbjct: 443 QSVE 446
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 203 GGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQEGASKSGPSRKKAFHHEE-IHPSH 261
G RPP P PG++ +A + + EGA GP+ A H I SH
Sbjct: 383 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISH 442
Query: 262 YAFE 265
+ E
Sbjct: 443 QSVE 446
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 203 GGKARPPTAPGTSGALKSPGRSKLIASALSKPLPHQEGASKSGPSRKKAFHHEE-IHPSH 261
G RPP P PG++ +A + + EGA GP+ A H I SH
Sbjct: 389 GNGTRPPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPPATSHPRVIRISH 448
Query: 262 YAFE 265
+ E
Sbjct: 449 QSVE 452
>gi|124028529 symplekin [Homo sapiens]
Length = 1274
Score = 31.2 bits (69), Expect = 1.6
Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 35/222 (15%)
Query: 108 SPLTPPDLNLRAEEIDPVYFDLHPGQGHTKPEYYYPNFLPSPFSSWDLRD--------MA 159
SPL P +L + ID V D+ T + N S + ++ M
Sbjct: 938 SPLNPGELLIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPML 997
Query: 160 LLLNAENKTEAVPRVGGLLGKYIDRLIQLE-WLQ-------VQTVQCEKAKGGKARPPTA 211
L+ PR+GG + + RLI + W ++ Q K + +
Sbjct: 998 LMRTVIQSLTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLP 1057
Query: 212 PGTSGAL--KSPGRSKLIASALSKPLPHQ------------EGASKSGPSRKKA----FH 253
P GA+ K P + + + + PHQ E + K P K+A
Sbjct: 1058 PQQLGAVFDKCPELREPLLAHVRSFTPHQQAHIPNSIMTILEASGKQEPEAKEAPAGPLE 1117
Query: 254 HEEIHPSHYAFETSPRPIDVLGGTRFCSQRQTLEMRTEEKKK 295
+++ P A +PRP L G R +Q + L+ + EE++K
Sbjct: 1118 EDDLEPLTLAPAPAPRPPQDLIGLRL-AQEKALKRQLEEEQK 1158
>gi|27883882 P18SRP protein [Homo sapiens]
Length = 155
Score = 31.2 bits (69), Expect = 1.6
Identities = 23/86 (26%), Positives = 35/86 (40%)
Query: 282 QRQTLEMRTEEKKKKSSKSTKLQRWDLSGSGSSSKVETSGHIRVPKQAAVILDSADSCKA 341
Q + + E+KK+KS + KL++ SSS E + + K K+
Sbjct: 66 QEKRINEEEEKKKEKSKEKIKLKKKRKRSYSSSSTEEDTSKQKKQKYQKKEKKKEKKSKS 125
Query: 342 SKTQAHAHPRKKGKAESCGHATVSSE 367
K + H +KK K E SSE
Sbjct: 126 KKGKHHKKEKKKRKKEKHSSTPNSSE 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,870,140
Number of Sequences: 37866
Number of extensions: 849380
Number of successful extensions: 3682
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 3610
Number of HSP's gapped (non-prelim): 145
length of query: 383
length of database: 18,247,518
effective HSP length: 104
effective length of query: 279
effective length of database: 14,309,454
effective search space: 3992337666
effective search space used: 3992337666
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.