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Search of human proteins with 32455236
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32455236 helicase (DNA) B [Homo sapiens]
(1087 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32455236 helicase (DNA) B [Homo sapiens] 2209 0.0
gi|20336290 DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2 ... 37 0.078
gi|20336294 DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1 ... 37 0.078
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 37 0.10
gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precurs... 37 0.10
gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo sapi... 37 0.13
gi|239749756 PREDICTED: hypothetical protein [Homo sapiens] 36 0.23
gi|239744015 PREDICTED: hypothetical protein XP_002343005 [Homo ... 36 0.23
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 35 0.30
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 35 0.30
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 35 0.30
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 35 0.30
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 35 0.50
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 35 0.50
gi|115583663 alpha-2-plasmin inhibitor [Homo sapiens] 34 0.86
gi|24308179 CTTNBP2 N-terminal like [Homo sapiens] 33 1.1
gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo sapi... 33 1.5
gi|14149696 SEC31 homolog B [Homo sapiens] 33 1.5
gi|118918429 NOD3 protein [Homo sapiens] 33 1.9
gi|239755246 PREDICTED: hypothetical protein XP_002344510 [Homo ... 32 3.3
gi|158508495 sex comb on midleg-like 4 [Homo sapiens] 32 3.3
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 32 3.3
gi|189011568 adenomatous polyposis coli [Homo sapiens] 32 4.3
gi|189011566 adenomatous polyposis coli [Homo sapiens] 32 4.3
gi|53759122 adenomatous polyposis coli [Homo sapiens] 32 4.3
gi|216547801 SH2 domain containing 3C isoform e [Homo sapiens] 32 4.3
gi|216547790 SH2 domain containing 3C isoform d [Homo sapiens] 32 4.3
gi|216547763 SH2 domain containing 3C isoform b [Homo sapiens] 32 4.3
gi|41281821 SH2 domain containing 3C isoform a [Homo sapiens] 32 4.3
gi|26051204 calcium/calmodulin-dependent protein kinase II beta ... 31 5.6
>gi|32455236 helicase (DNA) B [Homo sapiens]
Length = 1087
Score = 2209 bits (5723), Expect = 0.0
Identities = 1087/1087 (100%), Positives = 1087/1087 (100%)
Query: 1 MARSSPYLRQLQGPLLPPRDLVEEDDDYLNDDVEEDEESVFIDAEELCSGGVKAGSLPGC 60
MARSSPYLRQLQGPLLPPRDLVEEDDDYLNDDVEEDEESVFIDAEELCSGGVKAGSLPGC
Sbjct: 1 MARSSPYLRQLQGPLLPPRDLVEEDDDYLNDDVEEDEESVFIDAEELCSGGVKAGSLPGC 60
Query: 61 LRVSICDENTQETCKVFGRFPITGAWWRVKVQVKPVVGSRSYQYQVQGFPSYFLQSDMSP 120
LRVSICDENTQETCKVFGRFPITGAWWRVKVQVKPVVGSRSYQYQVQGFPSYFLQSDMSP
Sbjct: 61 LRVSICDENTQETCKVFGRFPITGAWWRVKVQVKPVVGSRSYQYQVQGFPSYFLQSDMSP 120
Query: 121 PNQKHICALFLKECEVSSDDVNKFLTWVKEVSNYKNLNFENLRETLRTFHKETGRKDQKQ 180
PNQKHICALFLKECEVSSDDVNKFLTWVKEVSNYKNLNFENLRETLRTFHKETGRKDQKQ
Sbjct: 121 PNQKHICALFLKECEVSSDDVNKFLTWVKEVSNYKNLNFENLRETLRTFHKETGRKDQKQ 180
Query: 181 PTQNGQEELFLDNEMSLPLENTIPFRNVMTALQFPKIMEFLPVLLPRHFKWIIGSGSKEM 240
PTQNGQEELFLDNEMSLPLENTIPFRNVMTALQFPKIMEFLPVLLPRHFKWIIGSGSKEM
Sbjct: 181 PTQNGQEELFLDNEMSLPLENTIPFRNVMTALQFPKIMEFLPVLLPRHFKWIIGSGSKEM 240
Query: 241 LKEIEEILGTHPWKLGFSKITYREWKLLRCEASWIAFCQCESLLQLMTDLEKNALIMYSR 300
LKEIEEILGTHPWKLGFSKITYREWKLLRCEASWIAFCQCESLLQLMTDLEKNALIMYSR
Sbjct: 241 LKEIEEILGTHPWKLGFSKITYREWKLLRCEASWIAFCQCESLLQLMTDLEKNALIMYSR 300
Query: 301 LKQICREDGHTYVEVNDLTLTLSNHMSFHAASESLKFLKDIGVVTYEKSCVFPYDLYHAE 360
LKQICREDGHTYVEVNDLTLTLSNHMSFHAASESLKFLKDIGVVTYEKSCVFPYDLYHAE
Sbjct: 301 LKQICREDGHTYVEVNDLTLTLSNHMSFHAASESLKFLKDIGVVTYEKSCVFPYDLYHAE 360
Query: 361 RAIAFSICDLMKKPPWHLCVDVEKVLASIHTTKPENSSDDALNESKPDEVRLENPVDVVD 420
RAIAFSICDLMKKPPWHLCVDVEKVLASIHTTKPENSSDDALNESKPDEVRLENPVDVVD
Sbjct: 361 RAIAFSICDLMKKPPWHLCVDVEKVLASIHTTKPENSSDDALNESKPDEVRLENPVDVVD 420
Query: 421 TQDNGDHIWTNGENEINAEISEVQLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCG 480
TQDNGDHIWTNGENEINAEISEVQLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCG
Sbjct: 421 TQDNGDHIWTNGENEINAEISEVQLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCG 480
Query: 481 KTTIVSRLFKHIEQLEEREVKKACEDFEQDQNASEEWITFTEQSQLEADKAIEVLLTAPT 540
KTTIVSRLFKHIEQLEEREVKKACEDFEQDQNASEEWITFTEQSQLEADKAIEVLLTAPT
Sbjct: 481 KTTIVSRLFKHIEQLEEREVKKACEDFEQDQNASEEWITFTEQSQLEADKAIEVLLTAPT 540
Query: 541 GKAAGLLRQKTGLHAYTLCQVNYSFYSWTQTMMTTNKPWKFSSVRVLVVDEGSLVSVGIF 600
GKAAGLLRQKTGLHAYTLCQVNYSFYSWTQTMMTTNKPWKFSSVRVLVVDEGSLVSVGIF
Sbjct: 541 GKAAGLLRQKTGLHAYTLCQVNYSFYSWTQTMMTTNKPWKFSSVRVLVVDEGSLVSVGIF 600
Query: 601 KSVLNLLCEHSKLSKLIILGDIRQLPSIEPGNLLKDLFETLKSRNCAIELKTNHRAESQL 660
KSVLNLLCEHSKLSKLIILGDIRQLPSIEPGNLLKDLFETLKSRNCAIELKTNHRAESQL
Sbjct: 601 KSVLNLLCEHSKLSKLIILGDIRQLPSIEPGNLLKDLFETLKSRNCAIELKTNHRAESQL 660
Query: 661 IVDNATRISRRQFPKFDAELNISDNPTLPISIQDKTFIFVRLPEEDASSQSSKTNHHSCL 720
IVDNATRISRRQFPKFDAELNISDNPTLPISIQDKTFIFVRLPEEDASSQSSKTNHHSCL
Sbjct: 661 IVDNATRISRRQFPKFDAELNISDNPTLPISIQDKTFIFVRLPEEDASSQSSKTNHHSCL 720
Query: 721 YSAVKTLLQENNLQNAKTSQFIAFRRQDCDLINDCCCKHYTGHLTKDHQSRLVFGIGDKI 780
YSAVKTLLQENNLQNAKTSQFIAFRRQDCDLINDCCCKHYTGHLTKDHQSRLVFGIGDKI
Sbjct: 721 YSAVKTLLQENNLQNAKTSQFIAFRRQDCDLINDCCCKHYTGHLTKDHQSRLVFGIGDKI 780
Query: 781 CCTRNAYLSDLLPENISGSQQNNDLDASSEDFSGTLPDFAKNKRDFESNVRLCNGEIFFI 840
CCTRNAYLSDLLPENISGSQQNNDLDASSEDFSGTLPDFAKNKRDFESNVRLCNGEIFFI
Sbjct: 781 CCTRNAYLSDLLPENISGSQQNNDLDASSEDFSGTLPDFAKNKRDFESNVRLCNGEIFFI 840
Query: 841 TNDVTDVTFGKRRSLTINNMAGLEVTVDFKKLMKYCRIKHAWARTIHTFQGSEEQTVVYV 900
TNDVTDVTFGKRRSLTINNMAGLEVTVDFKKLMKYCRIKHAWARTIHTFQGSEEQTVVYV
Sbjct: 841 TNDVTDVTFGKRRSLTINNMAGLEVTVDFKKLMKYCRIKHAWARTIHTFQGSEEQTVVYV 900
Query: 901 VGKAGRQHWQHVYTAVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGA 960
VGKAGRQHWQHVYTAVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGA
Sbjct: 901 VGKAGRQHWQHVYTAVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGA 960
Query: 961 PPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS 1020
PPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS
Sbjct: 961 PPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS 1020
Query: 1021 SPDGVDTDDDLPKSRASKRTCGVNDDESPSKIFMVGESPQVSSRLQNLRLNNLIPRQLFK 1080
SPDGVDTDDDLPKSRASKRTCGVNDDESPSKIFMVGESPQVSSRLQNLRLNNLIPRQLFK
Sbjct: 1021 SPDGVDTDDDLPKSRASKRTCGVNDDESPSKIFMVGESPQVSSRLQNLRLNNLIPRQLFK 1080
Query: 1081 PTDNQET 1087
PTDNQET
Sbjct: 1081 PTDNQET 1087
>gi|20336290 DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2
[Homo sapiens]
Length = 1155
Score = 37.4 bits (85), Expect = 0.078
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 447 QDQVEVPLDRDQVAALEMICSNPVTVISGKGGCGKTTIVSRL 488
Q+ ++P+D + L I +PV VISG GCGKTT + +L
Sbjct: 390 QEAPQLPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQL 431
>gi|20336294 DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1
[Homo sapiens]
Length = 1194
Score = 37.4 bits (85), Expect = 0.078
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 447 QDQVEVPLDRDQVAALEMICSNPVTVISGKGGCGKTTIVSRL 488
Q+ ++P+D + L I +PV VISG GCGKTT + +L
Sbjct: 429 QEAPQLPVDPHRDTILNAIEQHPVVVISGDTGCGKTTRIPQL 470
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 37.0 bits (84), Expect = 0.10
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 583 SVRVLVVDEGSLVSVGIFKSVLNLLCEHSKLSKLIILGDIRQLPSIEPGNLLKDLFETLK 642
+V V V+DE IF+S+ NL+ E ++L I L +R S G + L
Sbjct: 330 TVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKL----- 384
Query: 643 SRNCAIELKTNHRAESQLIVDNATRISRRQFPKFDAELNISDNPTLPISIQDKTFIFVRL 702
+ ++ T+ R +L+ D + R Q P+++ + +D P+S + +
Sbjct: 385 EGDVPFKILTSSRNTYKLVTDAV--LDREQNPEYNITVTATDRGKPPLSSSSSITLHIGD 442
Query: 703 PEEDAS--SQSSKTNHHSCLYSAVKTLLQENNLQNAKTSQFIAFRRQDCDL 751
++A SQSS H + ENN A SQ R D DL
Sbjct: 443 VNDNAPVFSQSSYIVH-----------VAENNPPGASISQ---VRASDPDL 479
>gi|13470082 protocadherin gamma subfamily B, 4 isoform 1 precursor
[Homo sapiens]
Length = 923
Score = 37.0 bits (84), Expect = 0.10
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 583 SVRVLVVDEGSLVSVGIFKSVLNLLCEHSKLSKLIILGDIRQLPSIEPGNLLKDLFETLK 642
+V V V+DE IF+S+ NL+ E ++L I L +R S G + L
Sbjct: 330 TVEVEVIDENDNAPEVIFQSLPNLIMEDAELGTHIALLKVRDKDSRHNGEVTCKL----- 384
Query: 643 SRNCAIELKTNHRAESQLIVDNATRISRRQFPKFDAELNISDNPTLPISIQDKTFIFVRL 702
+ ++ T+ R +L+ D + R Q P+++ + +D P+S + +
Sbjct: 385 EGDVPFKILTSSRNTYKLVTDAV--LDREQNPEYNITVTATDRGKPPLSSSSSITLHIGD 442
Query: 703 PEEDAS--SQSSKTNHHSCLYSAVKTLLQENNLQNAKTSQFIAFRRQDCDL 751
++A SQSS H + ENN A SQ R D DL
Sbjct: 443 VNDNAPVFSQSSYIVH-----------VAENNPPGASISQ---VRASDPDL 479
>gi|100913206 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Homo
sapiens]
Length = 1270
Score = 36.6 bits (83), Expect = 0.13
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 447 QDQVEVPLDRDQVAALEMICSNPVTVISGKGGCGKTTIVSRLFKHIEQLEEREVKKACED 506
Q++ +P+ + + LE I N V +I G GCGKTT V + +D
Sbjct: 383 QERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFI--------------LDD 428
Query: 507 FEQDQNASEEWITFTEQSQLEADKAIE 533
F Q+ A+E I T+ ++ A E
Sbjct: 429 FIQNDRAAECNIVVTQPRRISAVSVAE 455
>gi|239749756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 35.8 bits (81), Expect = 0.23
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 24/125 (19%)
Query: 941 FPRKTRLKHFLQSKLSSSG----------APPADFPSPRKSSGDSGGPSTPSASP----- 985
F +TRL+H L + G A P DF P S S G S+PSA P
Sbjct: 2 FRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRIQ 61
Query: 986 -------LPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS--SPDGVDTDDDLPKSRA 1036
LP A + W+ A + L ER S P D++ + + A
Sbjct: 62 LRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAPA 121
Query: 1037 SKRTC 1041
+ +C
Sbjct: 122 GRGSC 126
>gi|239744015 PREDICTED: hypothetical protein XP_002343005 [Homo
sapiens]
Length = 385
Score = 35.8 bits (81), Expect = 0.23
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 24/125 (19%)
Query: 941 FPRKTRLKHFLQSKLSSSG----------APPADFPSPRKSSGDSGGPSTPSASP----- 985
F +TRL+H L + G A P DF P S S G S+PSA P
Sbjct: 2 FRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRIQ 61
Query: 986 -------LPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS--SPDGVDTDDDLPKSRA 1036
LP A + W+ A + L ER S P D++ + + A
Sbjct: 62 LRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSASIWKPFCTDSESSIVSAPA 121
Query: 1037 SKRTC 1041
+ +C
Sbjct: 122 GRGSC 126
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.4 bits (80), Expect = 0.30
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 915 AVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADFPSPRKSSGD 974
A+TR R + ++AE + ++ R + LQ S G P + PSP SGD
Sbjct: 371 ALTRERIKEAIVAEIEDFH--ARREGIRQQIRFQPSLQPVASEPGCPDVEMPSPWAPSGD 428
Query: 975 SGGPSTPSASP 985
S P A P
Sbjct: 429 CAMESPPPAPP 439
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.4 bits (80), Expect = 0.30
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 915 AVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADFPSPRKSSGD 974
A+TR R + ++AE + ++ R + LQ S G P + PSP SGD
Sbjct: 371 ALTRERIKEAIVAEIEDFH--ARREGIRQQIRFQPSLQPVASEPGCPDVEMPSPWAPSGD 428
Query: 975 SGGPSTPSASP 985
S P A P
Sbjct: 429 CAMESPPPAPP 439
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 35.4 bits (80), Expect = 0.30
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 915 AVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADFPSPRKSSGD 974
A+TR R + ++AE + ++ R + LQ S G P + PSP SGD
Sbjct: 371 ALTRERIKEAIVAEIEDFH--ARREGIRQQIRFQPSLQPVASEPGCPDVEMPSPWAPSGD 428
Query: 975 SGGPSTPSASP 985
S P A P
Sbjct: 429 CAMESPPPAPP 439
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 35.4 bits (80), Expect = 0.30
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 915 AVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADFPSPRKSSGD 974
A+TR R + ++AE + ++ R + LQ S G P + PSP SGD
Sbjct: 232 ALTRERIKEAIVAEIEDFH--ARREGIRQQIRFQPSLQPVASEPGCPDVEMPSPWAPSGD 289
Query: 975 SGGPSTPSASP 985
S P A P
Sbjct: 290 CAMESPPPAPP 300
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 34.7 bits (78), Expect = 0.50
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 439 EISEVQLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCGKTTIVSRLFKHIEQLEER 498
++ +++ + ++P Q + +I ++ VTVISG+ GCGKTT V++ ++ ER
Sbjct: 194 DLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFI--LDNYIER 251
Query: 499 EVKKAC 504
AC
Sbjct: 252 GKGSAC 257
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 34.7 bits (78), Expect = 0.50
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 439 EISEVQLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCGKTTIVSRLFKHIEQLEER 498
++ +++ + ++P Q + +I ++ VTVISG+ GCGKTT V++ ++ ER
Sbjct: 194 DLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFI--LDNYIER 251
Query: 499 EVKKAC 504
AC
Sbjct: 252 GKGSAC 257
>gi|115583663 alpha-2-plasmin inhibitor [Homo sapiens]
Length = 491
Score = 33.9 bits (76), Expect = 0.86
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
Query: 104 YQVQGFPSYFLQSDMSPPNQKHICALFLKECEVSSDDVNKFLTWVKEVSNYKNLNF---- 159
Y +GFP ++ D +++ A + DD+ WVKE + K F
Sbjct: 167 YLQKGFP---IKEDFLEQSEQLFGAKPVSLTGKQEDDLANINQWVKEATEGKIQEFLSGL 223
Query: 160 --ENLRETLRTFHKETGRKDQKQPTQNGQEELFLDNEMSLPLE----NTIPFRNVMTALQ 213
+ + L H + +++ P+ ++ LD + ++P+E T P R + L+
Sbjct: 224 PEDTVLLLLNAIHFQGFWRNKFDPSLTQRDSFHLDEQFTVPVEMMQARTYPLRWFL--LE 281
Query: 214 FPKI----------MEFLPVLLPRHFKW 231
P+I M F+ VL+P HF+W
Sbjct: 282 QPEIQVAHFPFKNNMSFV-VLVPTHFEW 308
>gi|24308179 CTTNBP2 N-terminal like [Homo sapiens]
Length = 639
Score = 33.5 bits (75), Expect = 1.1
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 915 AVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSK-LSSSGAP-----PADFPSP 968
A T G C + ++N P + + Q K + + G P P PSP
Sbjct: 346 AKTNGHCDPEIQTTRELTAGNNVENQVPPREKSVALAQEKPVENGGCPVGIETPVPMPSP 405
Query: 969 RKSSGDSGGPSTPSASPL--PVVTDHAMTNDVTWSEASSP 1006
SSG S PS+ ++S L + +T + S ASSP
Sbjct: 406 LSSSGSSLSPSSTASSSLTSSPCSSPVLTKRLLGSSASSP 445
>gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo
sapiens]
Length = 1157
Score = 33.1 bits (74), Expect = 1.5
Identities = 10/42 (23%), Positives = 28/42 (66%)
Query: 444 QLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCGKTTIV 485
++ ++++++P+ ++ +E + +P+ ++ G+ G GKTT V
Sbjct: 244 EMQEERLKLPILSEEQVIMEAVAEHPIVIVCGETGSGKTTQV 285
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 33.1 bits (74), Expect = 1.5
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 955 LSSSGAPPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASSP 1006
+S + APPA FP P GD G P + ++T H D +W EA +P
Sbjct: 951 VSHTPAPPASFPVP-YLPGDPGAPCSSVLPTTGILTPHPGPQD-SWKEAPAP 1000
>gi|118918429 NOD3 protein [Homo sapiens]
Length = 1065
Score = 32.7 bits (73), Expect = 1.9
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 26/138 (18%)
Query: 492 IEQLEEREVKKACEDFEQDQNASEEWITFTEQSQLEADKAIEVLLTAP-----TGKAAG- 545
I E E+K E + A W+ SQ++AD+A+ ++ T P TG A G
Sbjct: 286 IRGFNEEEIKVCLEQMFPEDQALLGWML----SQVQADRALYLMCTVPAFCRLTGMALGH 341
Query: 546 LLRQKTGLH------AYTLCQVNYSFYSWTQTMMTTNKPWK--FSSVRVLVVDEGSLVSV 597
L R +TG TLC++ YSW M + + + +S R+ V G V
Sbjct: 342 LWRSRTGPQDAELWPPRTLCEL----YSWYFRMALSGEGQEKGKASPRIEQVAHGGRKMV 397
Query: 598 GIFKSVLNLLCEHSKLSK 615
G L L H L K
Sbjct: 398 G----TLGRLAFHGLLKK 411
>gi|239755246 PREDICTED: hypothetical protein XP_002344510 [Homo
sapiens]
Length = 120
Score = 32.0 bits (71), Expect = 3.3
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 22/102 (21%)
Query: 941 FPRKTRLKHFLQSKLSSSG----------APPADFPSPRKSSGDSGGPSTPSASP----- 985
F +TRL+H L + G A P DF P S S G S+PSA P
Sbjct: 2 FRPQTRLEHRLYKRTKRLGGKPGQERGRRAKPGDFLFPGLSPSRSAGSSSPSAPPPRRIQ 61
Query: 986 -------LPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS 1020
LP A + W+ A + L ER S
Sbjct: 62 LRAEPSGLPNTASSAWASSRLWNAARRRSVKALESKERGSAS 103
>gi|158508495 sex comb on midleg-like 4 [Homo sapiens]
Length = 414
Score = 32.0 bits (71), Expect = 3.3
Identities = 25/77 (32%), Positives = 27/77 (35%), Gaps = 16/77 (20%)
Query: 959 GAPPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQ 1018
G P A PR S SGGPS P P ASSP T +
Sbjct: 281 GGPAATAGGPRTSPMSSGGPSAPGLRP----------------PASSPKRNTTSLEGNRC 324
Query: 1019 LSSPDGVDTDDDLPKSR 1035
SSP D P+SR
Sbjct: 325 ASSPSQDAQDARRPRSR 341
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 32.0 bits (71), Expect = 3.3
Identities = 25/114 (21%), Positives = 48/114 (42%)
Query: 954 KLSSSGAPPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTF 1013
K S + +D S R S S+ S+S + + ++ + S ASS + +
Sbjct: 2125 KRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSS 2184
Query: 1014 AERWQLSSPDGVDTDDDLPKSRASKRTCGVNDDESPSKIFMVGESPQVSSRLQN 1067
+ SS + D+D++ + R S D+ES + + + Q S ++ N
Sbjct: 2185 SSSSSSSSSEESDSDEEEAQKRESTTHMKAYDEESVASLSTTQDETQDSFQMNN 2238
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 31.6 bits (70), Expect = 4.3
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 925 VIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADF-PSPRKSSGDSGGPSTPSA 983
V E+ + + + F + KH S ++ P ++ PSPRKSS DS + PS
Sbjct: 2746 VPVSETNESSIVERTPFSSSSSSKHSSPSGTVAARVTPFNYNPSPRKSSADSTS-ARPSQ 2804
Query: 984 SPLPVVTDHAMTNDVTWSEASS 1005
P PV + + T S SS
Sbjct: 2805 IPTPVNNNTKKRDSKTDSTESS 2826
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 31.6 bits (70), Expect = 4.3
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 925 VIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADF-PSPRKSSGDSGGPSTPSA 983
V E+ + + + F + KH S ++ P ++ PSPRKSS DS + PS
Sbjct: 2746 VPVSETNESSIVERTPFSSSSSSKHSSPSGTVAARVTPFNYNPSPRKSSADSTS-ARPSQ 2804
Query: 984 SPLPVVTDHAMTNDVTWSEASS 1005
P PV + + T S SS
Sbjct: 2805 IPTPVNNNTKKRDSKTDSTESS 2826
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 31.6 bits (70), Expect = 4.3
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 925 VIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADF-PSPRKSSGDSGGPSTPSA 983
V E+ + + + F + KH S ++ P ++ PSPRKSS DS + PS
Sbjct: 2746 VPVSETNESSIVERTPFSSSSSSKHSSPSGTVAARVTPFNYNPSPRKSSADSTS-ARPSQ 2804
Query: 984 SPLPVVTDHAMTNDVTWSEASS 1005
P PV + + T S SS
Sbjct: 2805 IPTPVNNNTKKRDSKTDSTESS 2826
>gi|216547801 SH2 domain containing 3C isoform e [Homo sapiens]
Length = 700
Score = 31.6 bits (70), Expect = 4.3
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 975 SGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLSSPDGVDTDDDLPKS 1034
S P++P SP H VT ++ + D+ T + DG T LP+
Sbjct: 178 SSKPASP-VSPSGPKGSHMKRRSVTMTDGLTADKVTRS----------DGCPTSTSLPRP 226
Query: 1035 RASKRTCGVNDDESP---SKIFMVGESP 1059
R S R+C ++ D+ P S + + ESP
Sbjct: 227 RDSIRSCALSMDQIPDLHSPMSPISESP 254
>gi|216547790 SH2 domain containing 3C isoform d [Homo sapiens]
Length = 702
Score = 31.6 bits (70), Expect = 4.3
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 975 SGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLSSPDGVDTDDDLPKS 1034
S P++P SP H VT ++ + D+ T + DG T LP+
Sbjct: 180 SSKPASP-VSPSGPKGSHMKRRSVTMTDGLTADKVTRS----------DGCPTSTSLPRP 228
Query: 1035 RASKRTCGVNDDESP---SKIFMVGESP 1059
R S R+C ++ D+ P S + + ESP
Sbjct: 229 RDSIRSCALSMDQIPDLHSPMSPISESP 256
>gi|216547763 SH2 domain containing 3C isoform b [Homo sapiens]
Length = 703
Score = 31.6 bits (70), Expect = 4.3
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 975 SGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLSSPDGVDTDDDLPKS 1034
S P++P SP H VT ++ + D+ T + DG T LP+
Sbjct: 181 SSKPASP-VSPSGPKGSHMKRRSVTMTDGLTADKVTRS----------DGCPTSTSLPRP 229
Query: 1035 RASKRTCGVNDDESP---SKIFMVGESP 1059
R S R+C ++ D+ P S + + ESP
Sbjct: 230 RDSIRSCALSMDQIPDLHSPMSPISESP 257
>gi|41281821 SH2 domain containing 3C isoform a [Homo sapiens]
Length = 860
Score = 31.6 bits (70), Expect = 4.3
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 14/88 (15%)
Query: 975 SGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLSSPDGVDTDDDLPKS 1034
S P++P SP H VT ++ + D+ T + DG T LP+
Sbjct: 338 SSKPASP-VSPSGPKGSHMKRRSVTMTDGLTADKVTRS----------DGCPTSTSLPRP 386
Query: 1035 RASKRTCGVNDDESP---SKIFMVGESP 1059
R S R+C ++ D+ P S + + ESP
Sbjct: 387 RDSIRSCALSMDQIPDLHSPMSPISESP 414
>gi|26051204 calcium/calmodulin-dependent protein kinase II beta
isoform 1 [Homo sapiens]
Length = 666
Score = 31.2 bits (69), Expect = 5.6
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 926 IAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGAPPADFPSPRKSSGDSGGPSTPSASP 985
I E S N +++ + R+ L S SGAP A+ P P S P +P +P
Sbjct: 391 IKESSDSANTTIEDEDAKAPRVPDILSSVRRGSGAPEAEGPLPCPSP----APFSPLPAP 446
Query: 986 LPVVTD 991
P ++D
Sbjct: 447 SPRISD 452
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,237,084
Number of Sequences: 37866
Number of extensions: 1955061
Number of successful extensions: 7884
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 7834
Number of HSP's gapped (non-prelim): 81
length of query: 1087
length of database: 18,247,518
effective HSP length: 113
effective length of query: 974
effective length of database: 13,968,660
effective search space: 13605474840
effective search space used: 13605474840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.