Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 32306536
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32306536 mitochondrial translational initiation factor 3
[Homo sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32306536 mitochondrial translational initiation factor 3 [Hom... 548 e-156
gi|27883882 P18SRP protein [Homo sapiens] 36 0.032
gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens] 33 0.27
gi|82880656 coiled-coil domain containing 46 isoform a [Homo sap... 32 0.61
gi|23199971 T-cell activation Rho GTPase-activating protein isof... 32 0.80
gi|21314774 T-cell activation Rho GTPase-activating protein isof... 32 0.80
gi|126362969 Nck-associated protein 5 isoform 2 [Homo sapiens] 31 1.4
gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens] 31 1.4
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 30 1.8
gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens] 30 2.3
gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens] 30 2.3
gi|70166580 GRINL1A upstream protein isoform 7 [Homo sapiens] 30 2.3
gi|109134347 NY-REN-58 antigen [Homo sapiens] 30 2.3
gi|109134355 NY-REN-58 antigen [Homo sapiens] 30 2.3
gi|4502165 apolipoprotein F precursor [Homo sapiens] 30 3.0
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 30 3.0
gi|38201706 sterile alpha motif domain containing 9 [Homo sapiens] 30 3.0
gi|27262622 neuron navigator 1 [Homo sapiens] 29 4.0
gi|16507200 ubiquitin specific protease 28 [Homo sapiens] 29 5.2
gi|83715968 sarcoma antigen NY-SAR-79 [Homo sapiens] 29 5.2
gi|21359945 chromosome condensation protein G [Homo sapiens] 28 6.8
gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens] 28 8.8
gi|214010216 SMC6 protein [Homo sapiens] 28 8.8
gi|13375848 SMC6 protein [Homo sapiens] 28 8.8
>gi|32306536 mitochondrial translational initiation factor 3 [Homo
sapiens]
Length = 278
Score = 548 bits (1412), Expect = e-156
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MAALFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIASAPRLSFLIHAKAFSTAED 60
MAALFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIASAPRLSFLIHAKAFSTAED
Sbjct: 1 MAALFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIASAPRLSFLIHAKAFSTAED 60
Query: 61 TQNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRN 120
TQNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRN
Sbjct: 61 TQNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRN 120
Query: 121 TSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQ 180
TSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQ
Sbjct: 121 TSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQ 180
Query: 181 QWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVL 240
QWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVL
Sbjct: 181 QWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVL 240
Query: 241 RALSKNEEKAYKETQETQERDTLNKDHGNDKESNVLHQ 278
RALSKNEEKAYKETQETQERDTLNKDHGNDKESNVLHQ
Sbjct: 241 RALSKNEEKAYKETQETQERDTLNKDHGNDKESNVLHQ 278
>gi|27883882 P18SRP protein [Homo sapiens]
Length = 155
Score = 36.2 bits (82), Expect = 0.032
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 104 NVIRLMDERDLRLVQRNTSTEPA--EYQLMTGLQILQERQRLREMEKANPKTGPTLR--- 158
N +R+ +RD+ L +TS+E + E + + LQ LQE++ E EK K+ ++
Sbjct: 30 NFLRVDPKRDIVLDVSSTSSEDSDEENEELNKLQALQEKRINEEEEKKKEKSKEKIKLKK 89
Query: 159 -KELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTM 217
++ SS+ + D + KQ Q +KK + KKGK+ + + ++ H +
Sbjct: 90 KRKRSYSSSSTEEDTSKQKKQKYQKKEKKKEKKSKSKKGKHHKKEKKKRKKEKH---SST 146
Query: 218 PGIATFSSR 226
P + FS +
Sbjct: 147 PNSSEFSRK 155
>gi|40255052 IQ motif containing with AAA domain 1 [Homo sapiens]
Length = 822
Score = 33.1 bits (74), Expect = 0.27
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 138 QERQRLREMEKA----NPKTGPTLRKEL----ILSSNIGQHDLDTKTKQIQQWIKKKHLV 189
+E ++LRE E NP P L E+ I + + + + + K + + + +
Sbjct: 225 KETEKLREEEMIFLGMNP---PPLFNEVSATVIQAEKVDRLRNEVQIKHEEDYREALVTI 281
Query: 190 QITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVLRALSKNEEK 249
+ +K + VD+ EN ++I H ++ TF P +GG A++ K ++
Sbjct: 282 KNDLKLIEGVDIKENLQDQIRHWFIECRNLTGTFPDYPDVEEGGSAII----FSDKTIQQ 337
Query: 250 AYKETQETQERDTLNKDHGNDKE 272
++ QE + NK KE
Sbjct: 338 VIEDIIANQEEEEKNKKKKKKKE 360
>gi|82880656 coiled-coil domain containing 46 isoform a [Homo
sapiens]
Length = 955
Score = 32.0 bits (71), Expect = 0.61
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 18/185 (9%)
Query: 77 NVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNTSTEPAEYQLMTGLQI 136
N K +++ +++ L + A++ L E L + ++ E E + Q
Sbjct: 460 NTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQ 519
Query: 137 LQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITIKKG 196
LQE + R+ + + + + K + K I + KK H +Q + KG
Sbjct: 520 LQESELQRKQQLRDQENKFQMEKSHL--------------KHIYE--KKAHDLQSELDKG 563
Query: 197 K-NVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVLRALSKNEEKAYKETQ 255
K + ++ EE + + + + T R QA Q AL R + N EK Y E +
Sbjct: 564 KEDTQKKIHKFEEALKEKEEQLTRV-TEVQRLQAQQADAALEEFKRQVELNSEKVYAEMK 622
Query: 256 ETQER 260
E E+
Sbjct: 623 EQMEK 627
>gi|23199971 T-cell activation Rho GTPase-activating protein isoform
a [Homo sapiens]
Length = 553
Score = 31.6 bits (70), Expect = 0.80
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 4 LFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIAS--APRLSFLIHAKAFSTAEDT 61
L +K L +V ++ F L A + SP+AS +P+ +F ++F+T +
Sbjct: 262 LKIKNLAPGSVLPRALVLKAFSSSSLD--ASSDSSPVASPSSPKRNFFSRHQSFTTKTEK 319
Query: 62 QNEGKKIKKNKTAFSNV-GRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRN 120
++IKK+ +F+ +K+ + + K D H +R + R+VQ N
Sbjct: 320 GKPSREIKKHSMSFTFAPHKKVLTKNLSAGSGKSQDFTRDHVPRGVRKESQLAGRIVQEN 379
>gi|21314774 T-cell activation Rho GTPase-activating protein isoform
b [Homo sapiens]
Length = 731
Score = 31.6 bits (70), Expect = 0.80
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 4 LFLKRLTLQTVKSENSCIRCFGKHILQKTAPAQLSPIAS--APRLSFLIHAKAFSTAEDT 61
L +K L +V ++ F L A + SP+AS +P+ +F ++F+T +
Sbjct: 440 LKIKNLAPGSVLPRALVLKAFSSSSLD--ASSDSSPVASPSSPKRNFFSRHQSFTTKTEK 497
Query: 62 QNEGKKIKKNKTAFSNV-GRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRN 120
++IKK+ +F+ +K+ + + K D H +R + R+VQ N
Sbjct: 498 GKPSREIKKHSMSFTFAPHKKVLTKNLSAGSGKSQDFTRDHVPRGVRKESQLAGRIVQEN 557
>gi|126362969 Nck-associated protein 5 isoform 2 [Homo sapiens]
Length = 590
Score = 30.8 bits (68), Expect = 1.4
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 62 QNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNT 121
+ + + + + K A + + R+++QR G MH + L +ER LRL
Sbjct: 40 EEQHRSLWREKLAVARLQREVAQRTSE---------GAMHEKLIHELEEERHLRLQSEKR 90
Query: 122 STEPAEYQLMTGLQILQERQRLREMEKA-----NPKTGPTLRKELILSSNIGQHDLDTKT 176
E +Q+ +Q+ ME+ + P +KE ++ + Q L +
Sbjct: 91 LQEVTLESERNRIQMRSLQQQFSRMEETVRNLLQSQGSPEQKKEETVNIMVYQEKLSEEE 150
Query: 177 KQIQQWIKKKHLV 189
++ ++ ++ H+V
Sbjct: 151 RKHKEALEDLHMV 163
>gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens]
Length = 1909
Score = 30.8 bits (68), Expect = 1.4
Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 62 QNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNT 121
+ + + + + K A + + R+++QR G MH + L +ER LRL
Sbjct: 40 EEQHRSLWREKLAVARLQREVAQRTSE---------GAMHEKLIHELEEERHLRLQSEKR 90
Query: 122 STEPAEYQLMTGLQILQERQRLREMEKA-----NPKTGPTLRKELILSSNIGQHDLDTKT 176
E +Q+ +Q+ ME+ + P +KE ++ + Q L +
Sbjct: 91 LQEVTLESERNRIQMRSLQQQFSRMEETVRNLLQSQGSPEQKKEETVNIMVYQEKLSEEE 150
Query: 177 KQIQQWIKKKHLV 189
++ ++ ++ H+V
Sbjct: 151 RKHKEALEDLHMV 163
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 30.4 bits (67), Expect = 1.8
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 36/169 (21%)
Query: 51 HAKAFSTAEDTQNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMD 110
HA + E+ Q + +K KK + + + + + D + L NM A+ RLM
Sbjct: 1117 HATTVNELEELQVQLQKEKKQ------LQKTMQELELVKKDAQQTTLMNMEIADYERLMK 1170
Query: 111 ERDLRLVQRNTSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELI-LSSNIGQ 169
E + +L +N E E + ++I +++Q TL++E+ L S++ Q
Sbjct: 1171 ELNQKLTNKNNKIEDLEQE----IKIQKQKQE-------------TLQEEITSLQSSVQQ 1213
Query: 170 H-DLDTKTKQIQQWIKKK----------HLVQITIKKGKNVDVSENEME 207
+ + +TK KQ+ KK+ HL+ KG+ ++ S+ ++E
Sbjct: 1214 YEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGE-LEASQQQVE 1261
>gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens]
Length = 445
Score = 30.0 bits (66), Expect = 2.3
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 67 KIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERD--LRLVQR-NTST 123
K++ ++ A + V R++++++ ++EK + H A L++E + L+ ++ N
Sbjct: 226 KVESSQEANAEVMREMTKKLYSQYEEKLQEEQRKHSAEKEALLEETNSFLKAIEEANKKM 285
Query: 124 EPAEYQLMTGLQILQERQRLRE-MEKANPKTG-PTLRKELILSSNIGQHD------LDTK 175
+ AE L Q + E RL E MEK + L E +S + D L+
Sbjct: 286 QAAEISLEEKDQRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDSDKERYQQLEEA 345
Query: 176 TKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQG-GK 234
+ +++ I +HL + + K V E+E + ++ Q I + ++G
Sbjct: 346 SASLRERI--RHLDDMVHCQQKKVKQMVEEIESLKKKLQQKQLLILQLLEKISFLEGENN 403
Query: 235 ALMCVLRALSKNEEKAYKETQE 256
L L L++ + K ET+E
Sbjct: 404 ELQSRLDYLTETQAKTEVETRE 425
>gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens]
Length = 550
Score = 30.0 bits (66), Expect = 2.3
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 67 KIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERD--LRLVQR-NTST 123
K++ ++ A + V R++++++ ++EK + H A L++E + L+ ++ N
Sbjct: 226 KVESSQEANAEVMREMTKKLYSQYEEKLQEEQRKHSAEKEALLEETNSFLKAIEEANKKM 285
Query: 124 EPAEYQLMTGLQILQERQRLRE-MEKANPKTG-PTLRKELILSSNIGQHD------LDTK 175
+ AE L Q + E RL E MEK + L E +S + D L+
Sbjct: 286 QAAEISLEEKDQRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDSDKERYQQLEEA 345
Query: 176 TKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQG-GK 234
+ +++ I +HL + + K V E+E + ++ Q I + ++G
Sbjct: 346 SASLRERI--RHLDDMVHCQQKKVKQMVEEIESLKKKLQQKQLLILQLLEKISFLEGENN 403
Query: 235 ALMCVLRALSKNEEKAYKETQE 256
L L L++ + K ET+E
Sbjct: 404 ELQSRLDYLTETQAKTEVETRE 425
>gi|70166580 GRINL1A upstream protein isoform 7 [Homo sapiens]
Length = 466
Score = 30.0 bits (66), Expect = 2.3
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 67 KIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERD--LRLVQR-NTST 123
K++ ++ A + V R++++++ ++EK + H A L++E + L+ ++ N
Sbjct: 226 KVESSQEANAEVMREMTKKLYSQYEEKLQEEQRKHSAEKEALLEETNSFLKAIEEANKKM 285
Query: 124 EPAEYQLMTGLQILQERQRLRE-MEKANPKTG-PTLRKELILSSNIGQHD------LDTK 175
+ AE L Q + E RL E MEK + L E +S + D L+
Sbjct: 286 QAAEISLEEKDQRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDSDKERYQQLEEA 345
Query: 176 TKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQG-GK 234
+ +++ I +HL + + K V E+E + ++ Q I + ++G
Sbjct: 346 SASLRERI--RHLDDMVHCQQKKVKQMVEEIESLKKKLQQKQLLILQLLEKISFLEGENN 403
Query: 235 ALMCVLRALSKNEEKAYKETQE 256
L L L++ + K ET+E
Sbjct: 404 ELQSRLDYLTETQAKTEVETRE 425
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 30.0 bits (66), Expect = 2.3
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 28/206 (13%)
Query: 68 IKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNTSTEPAE 127
+K T N K+ + HLF+EK + + L++E LV++ E +
Sbjct: 52 LKAEHTRLQNEHVKLQNELKHLFNEK-----QTQQEKLQLLLEELRGELVEKTKDLEEMK 106
Query: 128 YQLMT-------GLQILQE-----RQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTK 175
Q++T QI QE R+R R +++ K K +H
Sbjct: 107 LQILTPQKLELLRAQIQQELETPMRERFRNLDEEVEKYRAVYNKLRY------EHTFLKS 160
Query: 176 TKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKA 235
+ Q+ + L + IK + E + EE+ +Q+L + S R + + K
Sbjct: 161 EFEHQKEEYARILDEGKIKYESEIARLEEDKEELRNQLLNV--DLTKDSKRVEQLAREKV 218
Query: 236 LMC-VLRALSKN--EEKAYKETQETQ 258
+C L+ L E KA KE E Q
Sbjct: 219 YLCQKLKGLEAEVAELKAEKENSEAQ 244
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 30.0 bits (66), Expect = 2.3
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 28/206 (13%)
Query: 68 IKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQRNTSTEPAE 127
+K T N K+ + HLF+EK + + L++E LV++ E +
Sbjct: 52 LKAEHTRLQNEHVKLQNELKHLFNEK-----QTQQEKLQLLLEELRGELVEKTKDLEEMK 106
Query: 128 YQLMT-------GLQILQE-----RQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTK 175
Q++T QI QE R+R R +++ K K +H
Sbjct: 107 LQILTPQKLELLRAQIQQELETPMRERFRNLDEEVEKYRAVYNKLRY------EHTFLKS 160
Query: 176 TKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKA 235
+ Q+ + L + IK + E + EE+ +Q+L + S R + + K
Sbjct: 161 EFEHQKEEYARILDEGKIKYESEIARLEEDKEELRNQLLNV--DLTKDSKRVEQLAREKV 218
Query: 236 LMC-VLRALSKN--EEKAYKETQETQ 258
+C L+ L E KA KE E Q
Sbjct: 219 YLCQKLKGLEAEVAELKAEKENSEAQ 244
>gi|4502165 apolipoprotein F precursor [Homo sapiens]
Length = 326
Score = 29.6 bits (65), Expect = 3.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 203 ENEMEEIFHQILQTMPGIATF 223
ENE E+ H ++Q +PG+ TF
Sbjct: 172 ENEKEQAVHNVVQLLPGVGTF 192
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 29.6 bits (65), Expect = 3.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 231 QGGKALMCVLRALSKNEEKAYKETQETQERDTLNKDHGNDKESN 274
+GG R+ S E+ +KE + +ERD KD DK+ +
Sbjct: 54 RGGSRSRSRSRSKSAERERRHKERERDKERDRNKKDRDRDKDGH 97
>gi|38201706 sterile alpha motif domain containing 9 [Homo sapiens]
Length = 1589
Score = 29.6 bits (65), Expect = 3.0
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 24/108 (22%)
Query: 170 HDLDTKTKQIQ----------QWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPG 219
H +D K ++I +W+KK+HLV + I G + ++EE+F ++ +T
Sbjct: 26 HKIDQKHREILTEQDVNGAVLKWLKKEHLVDMGITHGPAI-----QIEELFKELRKT--- 77
Query: 220 IATFSSRPQAVQGGKALMCVLRALSKNEEKAYKETQETQERDTLNKDH 267
Q + GK + K++ + KE +ET ++ K++
Sbjct: 78 --AIEDSIQTSKMGKP----SKNAPKDQTVSQKERRETSKQKQKGKEN 119
>gi|27262622 neuron navigator 1 [Homo sapiens]
Length = 1874
Score = 29.3 bits (64), Expect = 4.0
Identities = 29/152 (19%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Query: 59 EDTQNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERDLRLVQ 118
E +Q + + +A +N+ Q ++++ + L L+D R+
Sbjct: 1091 ESSQEKVATLTSQLSANANLVAAFEQSLVNM-TSRLRHLAETAEEKDTELLDLRETIDFL 1149
Query: 119 RNTSTEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQH-DLDTKTK 177
+ ++E A+ + L + + +++ N + + S+IG D D K K
Sbjct: 1150 KKKNSE-AQAVIQGALNASETTPKELRIKRQNSSDSISSLNSITSHSSIGSSKDADAKKK 1208
Query: 178 QIQQWIKKKHLVQITIKKGKNVDVSENEMEEI 209
+ + W++ +IKKG S +++EEI
Sbjct: 1209 KKKSWLRSSFNKAFSIKKGPKSASSYSDIEEI 1240
>gi|16507200 ubiquitin specific protease 28 [Homo sapiens]
Length = 1077
Score = 28.9 bits (63), Expect = 5.2
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Query: 123 TEPAEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQQW 182
TE M LQ L + +P L K SS Q D+ T ++ W
Sbjct: 207 TEKRNIMFMQELQYLFALMMGSNRKFVDPSAALDLLKGAFRSSEEQQQDVSEFTHKLLDW 266
Query: 183 IKKKHLVQITIKKGKNVDVSENEMEEIFH 211
++ + + + +N SEN M ++F+
Sbjct: 267 LEDAFQLAVNVNSPRN--KSENPMVQLFY 293
>gi|83715968 sarcoma antigen NY-SAR-79 [Homo sapiens]
Length = 1079
Score = 28.9 bits (63), Expect = 5.2
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 67 KIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMD-ERDLRLVQRNTSTEP 125
+++ NKT+F+++ + + H D+ RL+ R+ L + T+++
Sbjct: 568 EVENNKTSFNSILNETAHNTYH---NNNKDVSENEPFKQFRLLPGTREHALEKEITNSDQ 624
Query: 126 AEYQLMTGLQILQERQRLREMEKANPKTGPTLRKELILSSNIGQHDLDTKTKQIQQWIKK 185
+ L + L I K NP P + L SSN+ D K KQIQ KK
Sbjct: 625 TKADLDSSLDI-----------KKNPV--PCQKYSLRNSSNVMLDDKQCKIKQIQLLTKK 671
>gi|21359945 chromosome condensation protein G [Homo sapiens]
Length = 1015
Score = 28.5 bits (62), Expect = 6.8
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 178 QIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALM 237
Q Q + +K ++ + + + +V + + ++ IF Q++ TF P + K L
Sbjct: 614 QNQDFARKHFVLLLQVLQIDDVTIKISALKAIFDQLM-------TFGIEPFKTKKIKTLH 666
Query: 238 CVLRALSKNEEKAYKETQET 257
C ++ ++E+ KE +ET
Sbjct: 667 CEGTEINSDDEQESKEVEET 686
>gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens]
Length = 438
Score = 28.1 bits (61), Expect = 8.8
Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 67 KIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERD--LRLVQR-NTST 123
K++ ++ A + V R++++++ ++EK + H A L++E + L+ ++ N
Sbjct: 226 KVESSQEANAEVMREMTKKLYSQYEEKLQEEQRKHSAEKEALLEETNSFLKAIEEANKKM 285
Query: 124 EPAEYQLMTGLQILQERQRLRE-MEKANPKTG-PTLRKELILSSNIGQHD------LDTK 175
+ AE L Q + E RL E MEK + L E +S + D L+
Sbjct: 286 QAAEISLEEKDQRIGELDRLIERMEKERHQLQLQLLEHETEMSGELTDSDKERYQQLEEA 345
Query: 176 TKQIQQWIKK-KHLVQITIKKGKNVDVSENEMEEIFHQILQT 216
+ +++ I+ +V KK K + NE++ + +T
Sbjct: 346 SASLRERIRHLDDMVHCQQKKVKQMVEENNELQSRLDYLTET 387
>gi|214010216 SMC6 protein [Homo sapiens]
Length = 1091
Score = 28.1 bits (61), Expect = 8.8
Identities = 37/222 (16%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 59 EDTQNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERD----- 113
+D ++ + +K+ + + + KI + + + + + ++ ++ L DE
Sbjct: 694 KDIKHNEELLKRCQLHYKELKMKIRKNISEIRELE--NIEEHQSVDIATLEDEAQENKSK 751
Query: 114 LRLVQRNTSTEPAEYQLMTGLQILQERQRLREMEKANP--KTGPTLRKELILSSNIGQHD 171
+++V+ + + + + L+I E + K N + L+ EL L+ + + D
Sbjct: 752 MKMVEEHMEQQKENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELNLADS--EVD 809
Query: 172 LDTKTKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQ 231
+ K+ + +K+HL + KK + +D+ E E+EE Q Q P+ ++
Sbjct: 810 NQKRGKRHYEEKQKEHLDTLN-KKKRELDMKEKELEEKMSQARQIC---------PERIE 859
Query: 232 GGKALMCVLRALSKNEEKAYKETQETQERDTLNKDHGNDKES 273
K+ + + +++ +K E +R+ + + + +E+
Sbjct: 860 VEKSASILDKEINRLRQKIQAEHASHGDREEIMRQYQEARET 901
>gi|13375848 SMC6 protein [Homo sapiens]
Length = 1091
Score = 28.1 bits (61), Expect = 8.8
Identities = 37/222 (16%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 59 EDTQNEGKKIKKNKTAFSNVGRKISQRVIHLFDEKGNDLGNMHRANVIRLMDERD----- 113
+D ++ + +K+ + + + KI + + + + + ++ ++ L DE
Sbjct: 694 KDIKHNEELLKRCQLHYKELKMKIRKNISEIRELE--NIEEHQSVDIATLEDEAQENKSK 751
Query: 114 LRLVQRNTSTEPAEYQLMTGLQILQERQRLREMEKANP--KTGPTLRKELILSSNIGQHD 171
+++V+ + + + + L+I E + K N + L+ EL L+ + + D
Sbjct: 752 MKMVEEHMEQQKENMEHLKSLKIEAENKYDAIKFKINQLSELADPLKDELNLADS--EVD 809
Query: 172 LDTKTKQIQQWIKKKHLVQITIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSRPQAVQ 231
+ K+ + +K+HL + KK + +D+ E E+EE Q Q P+ ++
Sbjct: 810 NQKRGKRHYEEKQKEHLDTLN-KKKRELDMKEKELEEKMSQARQIC---------PERIE 859
Query: 232 GGKALMCVLRALSKNEEKAYKETQETQERDTLNKDHGNDKES 273
K+ + + +++ +K E +R+ + + + +E+
Sbjct: 860 VEKSASILDKEINRLRQKIQAEHASHGDREEIMRQYQEARET 901
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,682,130
Number of Sequences: 37866
Number of extensions: 395271
Number of successful extensions: 1533
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 28
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.