Guide to the Human Genome
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Name: MTIF3 Sequence: fasta or formatted (278aa) NCBI GI: 32306536
Description:

mitochondrial translational initiation factor 3

Referenced in:

Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         18           2
 C cysteine            1.1          3           1
 D aspartate           4.0         11           1
 E glutamate           7.6         21           2
 F phenylalanine       2.9          8           1
 G glycine             4.7         13           2
 H histidine           3.2          9           1
 I isoleucine          6.5         18           1
 K lysine             10.4         29           3
 L leucine            10.1         28           1
 M methionine          2.9          8           1
 N asparagine          5.8         16           1
 P proline             2.9          8           1
 Q glutamine           7.9         22           2
 R arginine            6.1         17           1
 S serine              5.8         16           2
 T threonine           6.8         19           1
 V valine              4.0         11           1
 W tryptophan          0.4          1           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial translational initiation factor 3 [Hom... 
SFRS12IP1             0.021   P18SRP protein 
IQCA1                 0.015   IQ motif containing with AAA domain 1 
CCDC46                0.013   coiled-coil domain containing 46 isoform a 
TAGAP                 0.013   T-cell activation Rho GTPase-activating protein isof...
TAGAP                 0.013   T-cell activation Rho GTPase-activating protein isof...
NAP5                  0.011   Nck-associated protein 5 isoform 2 
NAP5                  0.011   Nck-associated protein 5 isoform 1 
GCC2                  0.010   GRIP and coiled-coil domain-containing 2 
GCOM1                 0.010   GRINL1A combined protein isoform 2 
GCOM1                 0.010   GRINL1A combined protein isoform 1 
GCOM1                 0.010   GRINL1A upstream protein isoform 7 
CCDC41                0.010   NY-REN-58 antigen 
CCDC41                0.010   NY-REN-58 antigen 
APOF                  0.010   apolipoprotein F precursor 
DDX23                 0.010   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
SAMD9                 0.010   sterile alpha motif domain containing 9 
NAV1                  0.008   neuron navigator 1 
USP28                 0.008   ubiquitin specific protease 28 
CCDC73                0.008   sarcoma antigen NY-SAR-79 
NCAPG                 0.006   chromosome condensation protein G 
GCOM1                 0.006   GRINL1A combined protein isoform 8 
SMC6                  0.006   SMC6 protein 
SMC6                  0.006   SMC6 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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