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Search of human proteins with 31982899
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31982899 seven in absentia homolog 2 [Homo sapiens]
(324 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31982899 seven in absentia homolog 2 [Homo sapiens] 684 0.0
gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens] 463 e-131
gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens] 463 e-131
gi|110578665 seven in absentia homolog 3 [Homo sapiens] 194 9e-50
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 52 9e-07
gi|30023818 tripartite motif protein 50A [Homo sapiens] 51 1e-06
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 49 6e-06
gi|8923898 zinc finger protein 313 [Homo sapiens] 47 3e-05
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 46 4e-05
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 45 1e-04
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi... 45 1e-04
gi|87241872 ring finger protein 151 [Homo sapiens] 45 1e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 43 3e-04
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 43 4e-04
gi|14149746 nuclear receptor subfamily 2, group F, member 2 isof... 42 6e-04
gi|46249382 paired-like homeobox 2a [Homo sapiens] 42 7e-04
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 42 7e-04
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 42 7e-04
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 42 0.001
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 42 0.001
gi|87299628 biorientation of chromosomes in cell division 1-like... 41 0.001
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 41 0.001
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 41 0.001
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 41 0.002
gi|21264330 mindbomb homolog 2 [Homo sapiens] 40 0.002
gi|154146199 sal-like 3 [Homo sapiens] 40 0.003
gi|30520320 ring finger protein 166 [Homo sapiens] 40 0.003
gi|239752280 PREDICTED: similar to family with sequence similari... 40 0.004
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 40 0.004
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 40 0.004
>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
Length = 324
Score = 684 bits (1766), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MSRPSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGG 60
MSRPSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGG
Sbjct: 1 MSRPSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGG 60
Query: 61 GGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTP 120
GGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTP
Sbjct: 61 GGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTP 120
Query: 121 SIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGS 180
SIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGS
Sbjct: 121 SIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGS 180
Query: 181 LEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYE 240
LEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYE
Sbjct: 181 LEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYE 240
Query: 241 GHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFD 300
GHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFD
Sbjct: 241 GHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFD 300
Query: 301 TAIAHLFADNGNLGINVTISTCCP 324
TAIAHLFADNGNLGINVTISTCCP
Sbjct: 301 TAIAHLFADNGNLGINVTISTCCP 324
>gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens]
Length = 313
Score = 463 bits (1192), Expect = e-131
Identities = 221/286 (77%), Positives = 248/286 (86%), Gaps = 8/286 (2%)
Query: 37 TISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQA 96
T +A G+S P + V + G + +++L SLFECPVCFDYVLPPILQCQ+
Sbjct: 36 TATALPTGTSKCPPSQRVPALTG-------TTASNNDLASLFECPVCFDYVLPPILQCQS 88
Query: 97 GHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPE 156
GHLVC+ CR KL+CCPTCRG L SIRNLAMEKVA++VLFPCKYA++GC +TL HTEK +
Sbjct: 89 GHLVCSNCRPKLTCCPTCRGPLG-SIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAD 147
Query: 157 HEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAV 216
HE++CE+RPYSCPCPGASCKWQGSL+AVM HLMH HKSITTLQGEDIVFLATDINLPGAV
Sbjct: 148 HEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAV 207
Query: 217 DWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTW 276
DWVMMQSCFG HFMLVLEKQEKY+GHQQFFAIV LIGTRKQAENFAYRLELNG+RRRLTW
Sbjct: 208 DWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTW 267
Query: 277 EATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTISTC 322
EATPRSIH+G+A AIMNSDCLVFDT+IA LFA+NGNLGINVTIS C
Sbjct: 268 EATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 313
>gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens]
Length = 282
Score = 463 bits (1192), Expect = e-131
Identities = 221/286 (77%), Positives = 248/286 (86%), Gaps = 8/286 (2%)
Query: 37 TISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQA 96
T +A G+S P + V + G + +++L SLFECPVCFDYVLPPILQCQ+
Sbjct: 5 TATALPTGTSKCPPSQRVPALTG-------TTASNNDLASLFECPVCFDYVLPPILQCQS 57
Query: 97 GHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPE 156
GHLVC+ CR KL+CCPTCRG L SIRNLAMEKVA++VLFPCKYA++GC +TL HTEK +
Sbjct: 58 GHLVCSNCRPKLTCCPTCRGPLG-SIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAD 116
Query: 157 HEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAV 216
HE++CE+RPYSCPCPGASCKWQGSL+AVM HLMH HKSITTLQGEDIVFLATDINLPGAV
Sbjct: 117 HEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAV 176
Query: 217 DWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTW 276
DWVMMQSCFG HFMLVLEKQEKY+GHQQFFAIV LIGTRKQAENFAYRLELNG+RRRLTW
Sbjct: 177 DWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTW 236
Query: 277 EATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTISTC 322
EATPRSIH+G+A AIMNSDCLVFDT+IA LFA+NGNLGINVTIS C
Sbjct: 237 EATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282
>gi|110578665 seven in absentia homolog 3 [Homo sapiens]
Length = 269
Score = 194 bits (493), Expect = 9e-50
Identities = 93/172 (54%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
Query: 149 LHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLAT 208
LHH E H + P C CP SC+W+G LE V+ HL H+ + LQG +IVFLAT
Sbjct: 90 LHHQEAGLHAN--PVTPCLCMCPLFSCQWEGRLEVVVPHLRQIHR-VDILQGAEIVFLAT 146
Query: 209 DINLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELN 268
D++LP DW++M SC GHHF+LVL KQE++EGH QFFA ++LIGT QA+ F YRLELN
Sbjct: 147 DMHLPAPADWIIMHSCLGHHFLLVLRKQERHEGHPQFFATMMLIGTPTQADCFTYRLELN 206
Query: 269 GNRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTIS 320
N RRL WEATPRS+ + V + I + DCLV +T++A LF+DNG+L I + I+
Sbjct: 207 RNHRRLKWEATPRSVLECVDSVITDGDCLVLNTSLAQLFSDNGSLAIGIAIT 258
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 51.6 bits (122), Expect = 9e-07
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 20/111 (18%)
Query: 80 CPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCK 139
C +C P++ GH C +C K CP LT + N+A+ + + C+
Sbjct: 131 CQLCCSVFKDPVITT-CGHTFCRRCALKSEKCPVDNVKLTVVVNNIAVAEQIGELFIHCR 189
Query: 140 YATT---------------GCSLTLHHTEKPEHEDICEYRPYSCP----CP 171
+ GC T+ + + +HE C+YRP CP CP
Sbjct: 190 HGCRVAGSGKPPIFEVDPRGCPFTIKLSARKDHEGSCDYRPVRCPNNPSCP 240
>gi|30023818 tripartite motif protein 50A [Homo sapiens]
Length = 487
Score = 51.2 bits (121), Expect = 1e-06
Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 29/193 (15%)
Query: 73 ELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSC-------CPTCRGAL--TPSIR 123
EL +CP+C + P++ Q GH C C LSC CP CR A+ + S+
Sbjct: 9 ELEDWLQCPICLEVFKEPLM-LQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSSSLP 67
Query: 124 NLAMEKVASAVLFPCKYATTGCSLTLHHTE------KPEHEDIC---------EYRPYSC 168
N+++ +V A+ P C +HH + + E IC ++ P +
Sbjct: 68 NVSLARVIEALRLPGDPEPKVC---VHHRNPLSLFCEKDQELICGLCGLLGSHQHHPVT- 123
Query: 169 PCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHH 228
P + + L A++S L K + L + + +N WV+ + H
Sbjct: 124 PVSTVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQELH 183
Query: 229 FMLVLEKQEKYEG 241
++ EK EG
Sbjct: 184 HLVDEEKARCLEG 196
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 48.9 bits (115), Expect = 6e-06
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 79 ECPVCFDYVLPPILQCQAGHLVCNQCR-----QKLSCCPTCRGALTPSIRN--LAMEKVA 131
+C +C + P L GH+ C C Q+ SC CRG L+ N L ++++
Sbjct: 17 KCALCHKVLEDP-LTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNHVLPLKRLI 75
Query: 132 SAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHA 191
+ C YAT GC + + PEH + C++ P A C+ G + ++ + A
Sbjct: 76 LKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAP-------ARCRHAGCGQVLLRRDVEA 128
Query: 192 H 192
H
Sbjct: 129 H 129
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 46.6 bits (109), Expect = 3e-05
Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 62 GGAGPVSPQHHELTSL--FECPVCFDYVLPPILQCQAGHLVCNQCRQ-----KLSCCPTC 114
GGA ++ E L F CPVC + P+ Q GH+ C+ C Q K C C
Sbjct: 9 GGAAQLAGPAAEADPLGRFTCPVCLEVYEKPV-QVPCGHVFCSACLQECLKPKKPVCGVC 67
Query: 115 RGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDIC-EYRPY 166
R AL P +R + +E+ + C GC ++ H C +Y+ Y
Sbjct: 68 RSALAPGVRAVELERQIESTETSCH----GCRKNFFLSKIRSHVATCSKYQNY 116
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 46.2 bits (108), Expect = 4e-05
Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 7 TGPSANKPCSKQPPPQPQHTPS-PAAPPAAATISAAGPGSSAVP-------------AAA 52
TGP+AN P + PP P PS PAA P + P +S+ P A
Sbjct: 239 TGPAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVA 298
Query: 53 AVISGPGGGGGAGPVSP 69
V S P GGG GP P
Sbjct: 299 EVKSSPVGGGPRGPAGP 315
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 1 MSRPSSTGPSANKPCSKQPPPQPQHTPS-PAA-PPAAATISAAGPGSSAVPAA-AAVISG 57
MS P + P+A P PP P P+ PAA PPA +A P +A P+A AA +G
Sbjct: 214 MSLPEA--PAAETPAPAANPPAPTANPTGPAANPPAT---TANPPAPAANPSAPAATPTG 268
Query: 58 PGGGGGAGPVSPQHH 72
P A S H
Sbjct: 269 PAANPPAPAASSTPH 283
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 44.7 bits (104), Expect = 1e-04
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 9 PSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPA-AAAVISGPGGGGGAGP 66
P+ P PPP P P P PP+ +A G G PA GPGGGG P
Sbjct: 166 PAGGPPPPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAP 224
Score = 35.0 bits (79), Expect = 0.090
Identities = 24/62 (38%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 8 GPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGPV 67
GP A PPP P P P PP G S VPAAA G GGG P
Sbjct: 161 GPPAPPAGGPPPPPGPPPPPGPPPPP--------GLPPSGVPAAAH-----GAGGGPPPA 207
Query: 68 SP 69
P
Sbjct: 208 PP 209
Score = 28.5 bits (62), Expect = 8.5
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 9 PSANKPCSKQPPPQPQHTPS-------------PAAPPAAATISAAGPGSSAVPAAAAVI 55
P P PPP P PS P APP A G G+ A P AA I
Sbjct: 172 PPPGPPPPPGPPPPPGLPPSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGA-PGLAAAI 230
Query: 56 SG 57
+G
Sbjct: 231 AG 232
>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
sapiens]
Length = 280
Score = 44.7 bits (104), Expect = 1e-04
Identities = 33/101 (32%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 23 PQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQHHELTSLFECPV 82
P P AAP A ++ A+G P V S GA V Q L C V
Sbjct: 179 PWEEPEDAAP-VAPSVPASGYPELPTPRRE-VQSESAQEPGARDVEAQLRRLQEERTCKV 236
Query: 83 CFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIR 123
C D + I+ GHLVC +C L CP CR + +R
Sbjct: 237 CLDRAVS-IVFVPCGHLVCAECAPGLQLCPICRAPVRSRVR 276
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 44.7 bits (104), Expect = 1e-04
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 13/126 (10%)
Query: 76 SLFECPVCFDYVLPPILQCQAGHLVCNQC------RQKLSCCPTCRGALTPS--IRNLAM 127
S F C VC + P + H+ C +C RQK CP CR + + +
Sbjct: 16 SNFVCSVCHGVLKRPA-RLPCSHIFCKKCILRWLARQKT--CPCCRKEVKRKKVVHMNKL 72
Query: 128 EKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSH 187
K + CK A GC +T + H+D C + +CP G C Q + H
Sbjct: 73 RKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEG--CTSQVPRGTLAEH 130
Query: 188 LMHAHK 193
H +
Sbjct: 131 RQHCQQ 136
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.1 bits (100), Expect = 3e-04
Identities = 26/59 (44%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 14 PCSKQPPPQPQHTPSPAAPPAAATISA------AGPGSSAVPAAAAVISGPGGGGGAGP 66
P +K PP S A PAAA ++A AGP A PAA A +GPG G G GP
Sbjct: 122 PAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP 180
Score = 36.6 bits (83), Expect = 0.031
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 19/85 (22%)
Query: 2 SRPSSTGPSANKPCSKQPPPQPQH------------TPSPAAPPAAATISAAGPGSSAVP 49
S P++ P+A PPP P T +PA PP AA + G A P
Sbjct: 256 SPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAG--AAP 313
Query: 50 AAAAVISGPGG-----GGGAGPVSP 69
A A GP G G GA +P
Sbjct: 314 APAPAAGGPAGVSGQPGPGAAAAAP 338
Score = 34.3 bits (77), Expect = 0.15
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 19 PPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQ 70
P P P PA P A A + GPG P GPG G AGP + Q
Sbjct: 150 PEPAPAGPAKPAGPAALAARAGPGPGPGPGPG-----PGPGPGKPAGPGAAQ 196
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/29 (51%), Positives = 22/29 (75%), Gaps = 4/29 (13%)
Query: 30 AAPPAAATISAAGPGSSAVPAAAAVISGP 58
AAPPAA T++A+GP S+ AA+++ GP
Sbjct: 353 AAPPAAQTLAASGPAST----AASMVIGP 377
Score = 30.0 bits (66), Expect = 2.9
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 1 MSRPSSTGPSANKP--CSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGP 58
+ +P++ G P PP P PAAP AA +A P A A P
Sbjct: 228 LPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHP 287
Query: 59 GGGGGAGPVSP 69
G A P P
Sbjct: 288 AGPPTAAPAVP 298
>gi|153791535 general control of amino acid synthesis 5-like 2
[Homo sapiens]
Length = 837
Score = 42.7 bits (99), Expect = 4e-04
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 16 SKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPG-GGGGAG 65
S P P P PSPA+ P A P +A PA + GPG G GGAG
Sbjct: 21 SPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGPGVGSGGAG 71
Score = 35.8 bits (81), Expect = 0.053
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 19 PPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGPVSP 69
P P P P P PA A AA P S V SG G G G P P
Sbjct: 30 PAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGPGVGSG-GAGSGGDPARP 79
Score = 34.7 bits (78), Expect = 0.12
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 1 MSRPSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGG 60
M+ PS P+ +P P P+P P+ A+ P + PA AA +G G
Sbjct: 1 MAEPSQA-PTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTG 59
Query: 61 GGGAG 65
GG G
Sbjct: 60 TGGPG 64
>gi|14149746 nuclear receptor subfamily 2, group F, member 2
isoform a [Homo sapiens]
Length = 414
Score = 42.4 bits (98), Expect = 6e-04
Identities = 28/82 (34%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 4 PSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGG 63
P P + + Q PP P P P AP T GP S+ AA GPGG G
Sbjct: 11 PQDEVPGSQGSQASQAPPVPG--PPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGS 68
Query: 64 AGPVSPQHHELTSLFECPVCFD 85
QH EC VC D
Sbjct: 69 DKQQQQQH------IECVVCGD 84
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 42.0 bits (97), Expect = 7e-04
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 2 SRPSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATI---SAAGPGSSAVPAAAAVISGP 58
S+ S+ P+ + S PPP P SP P+ + S GPG P A+ +G
Sbjct: 177 SKESTCSPTPDSTASLPPPPAPG-LASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGV 235
Query: 59 GGGGGAGP 66
GGGG GP
Sbjct: 236 AGGGGGGP 243
Score = 30.8 bits (68), Expect = 1.7
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 5 SSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGA 64
S S CS P P T S PPA A P S P A+ SGPG G G
Sbjct: 172 SEDDDSKESTCS----PTPDSTASLPPPPAPGL---ASPRLSPSPLPVALGSGPGPGPGP 224
Query: 65 GPV 67
P+
Sbjct: 225 QPL 227
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 42.0 bits (97), Expect = 7e-04
Identities = 45/138 (32%), Positives = 56/138 (40%), Gaps = 46/138 (33%)
Query: 13 KPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPA---------AAAVISGPG---- 59
KP ++ PPP Q P+PA PAA A GP A+PA AAA + PG
Sbjct: 51 KPQAEPPPPAAQPPPAPA--PAA----AQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDE 104
Query: 60 -GGGGAGPVSPQHHELTSLFECPVCFDYVLPP-----ILQCQAGHLVCNQC-----RQKL 108
G GP + + ECP+C LPP +L C H C C R ++
Sbjct: 105 EAAEGGGPGAEE-------VECPLCL-VRLPPERAPRLLSCP--HRSCRDCLRHYLRLEI 154
Query: 109 S------CCPTCRGALTP 120
S CP C L P
Sbjct: 155 SESRVPISCPECSERLNP 172
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 42.0 bits (97), Expect = 7e-04
Identities = 45/138 (32%), Positives = 56/138 (40%), Gaps = 46/138 (33%)
Query: 13 KPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPA---------AAAVISGPG---- 59
KP ++ PPP Q P+PA PAA A GP A+PA AAA + PG
Sbjct: 51 KPQAEPPPPAAQPPPAPA--PAA----AQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDE 104
Query: 60 -GGGGAGPVSPQHHELTSLFECPVCFDYVLPP-----ILQCQAGHLVCNQC-----RQKL 108
G GP + + ECP+C LPP +L C H C C R ++
Sbjct: 105 EAAEGGGPGAEE-------VECPLCL-VRLPPERAPRLLSCP--HRSCRDCLRHYLRLEI 154
Query: 109 S------CCPTCRGALTP 120
S CP C L P
Sbjct: 155 SESRVPISCPECSERLNP 172
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 4 PSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGG 63
P S P+ P P P P+P PAAA + AA P SS+ PAAAA + G
Sbjct: 7 PVSAPPATPTPV---PAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTP 63
Query: 64 AGPVSP 69
A +P
Sbjct: 64 ASAQAP 69
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 4 PSSTGPSANKPCSKQPPPQPQHTPSPAA---PPAAATISAAGPGSSAVPAAAAVISGPGG 60
P P +QPPP PQ + P P A + +A P SS+ P A SG
Sbjct: 84 PHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPP 143
Query: 61 GGGAGPVSPQHHELTS 76
G G GP +TS
Sbjct: 144 GSGPGPTPTPPPAVTS 159
Score = 39.3 bits (90), Expect = 0.005
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 5 SSTGPSANKPCSKQPP---PQPQHTPSPA---APPAA-------ATISAAGPGSSAVPAA 51
SS+ P A P S PP P P TP PA APP A + + P + P
Sbjct: 128 SSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPP 187
Query: 52 AAVISGPGGG--GGAGPVSPQ 70
A + GPG G G GP P+
Sbjct: 188 PAAVPGPGPGPKQGPGPGGPK 208
Score = 37.7 bits (86), Expect = 0.014
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 4 PSSTGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGG 63
P S+G P + PPP P P P P GPG P + GP GGG
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPK----QGPGPGG---PKGGKMPGGPKPGGG 221
Query: 64 AGPVSPQHH 72
G +P H
Sbjct: 222 PGLSTPGGH 230
Score = 34.3 bits (77), Expect = 0.15
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 4 PSSTGPSANKPCSKQPPPQPQHTPSPAAP---PAAATISAAGPGSSAVPAAAAVISGPGG 60
P+S P + P PP + P AP P ++ + P + P A + GPG
Sbjct: 137 PTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGP 196
Query: 61 GGGAGP 66
G GP
Sbjct: 197 GPKQGP 202
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 20 PPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGPVS 68
PP P PA PP + +GPG + P A + PG P S
Sbjct: 125 PPASSSAP-PATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSS 172
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 41.2 bits (95), Expect = 0.001
Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 6 STGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAG 65
+T P P PPP PQ P P PP PG A P A G GG GAG
Sbjct: 2 ATNPQPQPPPPAPPPPPPQPQPQPPPPP---------PGPGAGPGA-----GGAGGAGAG 47
Query: 66 PVSPQ 70
PQ
Sbjct: 48 AGDPQ 52
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 41.2 bits (95), Expect = 0.001
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 38 ISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAG 97
+++ GP +SA P ++ G GAG Q S FEC +C D ++ G
Sbjct: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQD----STFECNICLDTAKDAVISL-CG 55
Query: 98 HLVCNQC-------RQKLSCCPTCRGALT 119
HL C C R CP C+ ++
Sbjct: 56 HLFCWPCLHQWLETRPNRQVCPVCKAGIS 84
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 41.2 bits (95), Expect = 0.001
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 38 ISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAG 97
+++ GP +SA P ++ G GAG Q S FEC +C D ++ G
Sbjct: 1 MASKGPSASASPENSSAGGPSGSSNGAGESGGQD----STFECNICLDTAKDAVISL-CG 55
Query: 98 HLVCNQC-------RQKLSCCPTCRGALT 119
HL C C R CP C+ ++
Sbjct: 56 HLFCWPCLHQWLETRPNRQVCPVCKAGIS 84
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 63 GAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSI 122
GA V Q L C VC D + I+ GHLVC +C L CP CR + +
Sbjct: 235 GARDVEAQLRRLQEERTCKVCLDRAVS-IVFVPCGHLVCAECAPGLQLCPICRAPVRSRV 293
Query: 123 R 123
R
Sbjct: 294 R 294
>gi|21264330 mindbomb homolog 2 [Homo sapiens]
Length = 1013
Score = 40.4 bits (93), Expect = 0.002
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 70 QHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIR 123
++ ++ CP+C D + + QC GH C C LS CP CR + I+
Sbjct: 959 RYRQMEERITCPICIDSHIRLVFQC--GHGACAPCGSALSACPICRQPIRDRIQ 1010
Score = 29.6 bits (65), Expect = 3.8
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 38 ISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQH----HELTSLF----------ECPVC 83
++A G A+ A GGGA P Q + +T+L EC VC
Sbjct: 834 LAAEGRVLKALQGCAQRFRERQAGGGAAPGPRQTLGTPNTVTNLHVGAAPGPEAAECLVC 893
Query: 84 FDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFP 137
+ L + VC +C +++ C C+ ++ +R E VASA P
Sbjct: 894 SELALLVLFSPCQHRTVCEECARRMKKCIRCQVVVSKKLRPDGSE-VASAAPAP 946
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 40.0 bits (92), Expect = 0.003
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 1 MSRPSSTGPSANKPCSKQPPPQPQHTPSPAAP-PAAATISAAG--PGSSAVPAAAAVISG 57
+SRP S + P P P P+PAAP PA A SAA P S++ P A A
Sbjct: 292 LSRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALA---- 347
Query: 58 PGGGGGAGPVSP 69
PG GA P P
Sbjct: 348 PGSLLGAAPGLP 359
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 1 MSRPSSTGPSANKPCSKQPPPQPQHTPSPAAPP-----AAATISAAGPGSSAVPAAAAVI 55
M RP + P P P P AA P AA I+ +GP + A A +
Sbjct: 233 MQRPPPRPSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPL 292
Query: 56 SGPGGGGG--AGPVSP 69
S P G GP P
Sbjct: 293 SRPESGASTPGGPAEP 308
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 13 KPCSKQPPPQPQHTPSPAAPPA--AATISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQ 70
+ C+K PP H +PA PP A+ P A AA G G A PV +
Sbjct: 71 RSCTKLPPVLIVHEDAPAPPPEDFPEPSPASSPSERAESEAAEEAGAEGAEGEARPVEKE 130
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 40.0 bits (92), Expect = 0.003
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 20/113 (17%)
Query: 56 SGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKL-----SC 110
+GP GG L + + CP+C + P+ GH C +C Q
Sbjct: 18 AGPAGGDSG---------LEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPL 68
Query: 111 CPTCRGALTPSIRNLA--MEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDIC 161
CP CR P + A +EK S+ PC+ GC+ + + H C
Sbjct: 69 CPLCRLPFDPKKVDKATHVEKQLSSYKAPCR----GCNKKVTLAKMRVHISSC 117
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 39.7 bits (91), Expect = 0.004
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 4 PSSTGP-SANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGG 62
PSS+G S+ Q P P PAA PA A AA P + PAAA ++
Sbjct: 430 PSSSGKISSGNSFPPQQAGSPLKRPFPAAAPAVA---AAAPAPAPAPAAAPALAAAAVAA 486
Query: 63 GAGPVSPQHHELTSL 77
AG +P H + S+
Sbjct: 487 AAGGAAPSHSQKPSV 501
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 39.7 bits (91), Expect = 0.004
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 2 SRPSSTGPSANKPCSKQ--PPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAA 52
+RPS GP + P + Q P P P PSPA P AA +AA PG S VP A
Sbjct: 260 NRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPS-VPQPA 311
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 39.7 bits (91), Expect = 0.004
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 2 SRPSSTGPSANKPCSKQ--PPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAA 52
+RPS GP + P + Q P P P PSPA P AA +AA PG S VP A
Sbjct: 260 NRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPS-VPQPA 311
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,813,470
Number of Sequences: 37866
Number of extensions: 880042
Number of successful extensions: 17472
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 695
Number of HSP's that attempted gapping in prelim test: 11410
Number of HSP's gapped (non-prelim): 5263
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.