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Search of human proteins with 31563534
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
(354 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens] 705 0.0
gi|28882049 replication factor C 2 isoform 2 [Homo sapiens] 622 e-178
gi|6677723 replication factor C 5 isoform 1 [Homo sapiens] 218 5e-57
gi|194306571 replication factor C 5 isoform 2 [Homo sapiens] 209 2e-54
gi|194306567 replication factor C 5 isoform 2 [Homo sapiens] 209 2e-54
gi|31881687 replication factor C 4 [Homo sapiens] 199 4e-51
gi|4506491 replication factor C 4 [Homo sapiens] 199 4e-51
gi|194306569 replication factor C 5 isoform 3 [Homo sapiens] 160 2e-39
gi|108773789 replication factor C 3 isoform 2 [Homo sapiens] 103 3e-22
gi|4506489 replication factor C 3 isoform 1 [Homo sapiens] 103 3e-22
gi|32528306 replication factor C large subunit [Homo sapiens] 60 3e-09
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 55 1e-07
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 45 1e-04
gi|27501458 CTF18, chromosome transmission fidelity factor 18 ho... 44 3e-04
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens] 42 6e-04
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens] 42 6e-04
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens] 42 6e-04
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens] 42 6e-04
gi|4506383 RAD17 homolog isoform 1 [Homo sapiens] 42 6e-04
gi|19718786 RAD17 homolog isoform 2 [Homo sapiens] 42 6e-04
gi|4502703 cell division cycle 6 protein [Homo sapiens] 37 0.021
gi|22749187 putative adenylate kinase-like protein C9orf98 [Homo... 35 0.078
gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens] 35 0.078
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 35 0.078
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 35 0.078
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 35 0.13
gi|31742536 fidgetin-like 1 [Homo sapiens] 35 0.13
gi|112789543 fidgetin-like 1 [Homo sapiens] 35 0.13
gi|21327685 YME1-like 1 isoform 1 [Homo sapiens] 34 0.17
gi|7657689 YME1-like 1 isoform 3 [Homo sapiens] 34 0.17
>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 705 bits (1820), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL 60
MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
Sbjct: 1 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL 60
Query: 61 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI 120
EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI
Sbjct: 61 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI 120
Query: 121 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP 180
KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
Sbjct: 121 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP 180
Query: 181 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF 240
IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
Sbjct: 181 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF 240
Query: 241 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF 300
SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
Sbjct: 241 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF 300
Query: 301 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 354
RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
Sbjct: 301 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 354
>gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]
Length = 320
Score = 622 bits (1605), Expect = e-178
Identities = 320/354 (90%), Positives = 320/354 (90%), Gaps = 34/354 (9%)
Query: 1 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL 60
MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
Sbjct: 1 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL 60
Query: 61 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKI 120
EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASND
Sbjct: 61 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASND---------- 110
Query: 121 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP 180
SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
Sbjct: 111 ------------------------SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP 146
Query: 181 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF 240
IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
Sbjct: 147 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF 206
Query: 241 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF 300
SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
Sbjct: 207 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF 266
Query: 301 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 354
RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
Sbjct: 267 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS 320
>gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]
Length = 340
Score = 218 bits (556), Expect = 5e-57
Identities = 118/317 (37%), Positives = 187/317 (58%), Gaps = 3/317 (0%)
Query: 28 PGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 87
P + LPWVEKYRP LN+++ ++D +S ++ F E +P++++ GPPGTGKT++IL
Sbjct: 12 PAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTIL 71
Query: 88 CLARALLGPALKDAM-LELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSM 146
A+ L +M LELNAS+DRGID++R I FA + KG K++ILDEAD+M
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAM 130
Query: 147 TDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVI 206
T AQ ALRR +E +++ TRF L CN KII +QSRC R+ LT ++ RL +V+
Sbjct: 131 TQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVV 190
Query: 207 EKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEM 266
E+E+V ++DG++A++ + GDMR+ALN LQST FG + E V+ P + +
Sbjct: 191 EEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANI 250
Query: 267 IQHCVNANIDEAYKILAHLWHL-GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHM 325
+ +N + AY+ + L L G + DI+ I +++ + ++
Sbjct: 251 LDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 326 KIAEGVNSLLQMAGLLA 342
+++ G N +Q++ L+A
Sbjct: 311 RLSVGTNEKIQLSSLIA 327
>gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 209 bits (533), Expect = 2e-54
Identities = 114/306 (37%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
VEKYRP LN+++ ++D +S ++ F E +P++++ GPPGTGKT++IL A+ L
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 99 KDAM-LELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRT 157
+M LELNAS+DRGID++R I FA + KG K++ILDEAD+MT AQ ALRR
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 120
Query: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 217
+E +++ TRF L CN KII +QSRC R+ LT ++ RL +V+E+E+V ++DG
Sbjct: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
Query: 218 LEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDE 277
++A++ + GDMR+ALN LQST FG + E V+ P + ++ +N +
Sbjct: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
Query: 278 AYKILAHLWHL-GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQ 336
AY+ + L L G + DI+ I +++ + ++ +++ G N +Q
Sbjct: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
Query: 337 MAGLLA 342
++ L+A
Sbjct: 301 LSSLIA 306
>gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 209 bits (533), Expect = 2e-54
Identities = 114/306 (37%), Positives = 182/306 (59%), Gaps = 3/306 (0%)
Query: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
VEKYRP LN+++ ++D +S ++ F E +P++++ GPPGTGKT++IL A+ L
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 99 KDAM-LELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRT 157
+M LELNAS+DRGID++R I FA + KG K++ILDEAD+MT AQ ALRR
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRV 120
Query: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 217
+E +++ TRF L CN KII +QSRC R+ LT ++ RL +V+E+E+V ++DG
Sbjct: 121 IEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDG 180
Query: 218 LEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDE 277
++A++ + GDMR+ALN LQST FG + E V+ P + ++ +N +
Sbjct: 181 MKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTT 240
Query: 278 AYKILAHLWHL-GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQ 336
AY+ + L L G + DI+ I +++ + ++ +++ G N +Q
Sbjct: 241 AYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQ 300
Query: 337 MAGLLA 342
++ L+A
Sbjct: 301 LSSLIA 306
>gi|31881687 replication factor C 4 [Homo sapiens]
Length = 363
Score = 199 bits (505), Expect = 4e-51
Identities = 124/334 (37%), Positives = 190/334 (56%), Gaps = 17/334 (5%)
Query: 29 GSAGHYE----LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84
GS+G + +PWVEKYRP ++E+ E+ V+ L+ ++PN++ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 85 SILCLARALLGPAL-KDAMLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKI 137
+IL AR L GP L + +LELNAS++RGI VVR K+K FAQ V+ P KI
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKI 146
Query: 138 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ 197
+ILDEADSMT AQ ALRRTME SKTTRF L CN +IIEP+ SRC+ R+ L+D
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 198 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE 257
RL+++ +KE V +D+G+ ++ ++GD+R+A+ LQS G E KV +
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTG--GKEITEKVITD 264
Query: 258 PHPLLVKEMIQ----HCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLK 313
++ E I C + + D+ ++ L G++ ++ + V +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
Query: 314 LEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQK 347
+++ +A+G + LQ+ L A + Q+
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCATVMQQ 358
>gi|4506491 replication factor C 4 [Homo sapiens]
Length = 363
Score = 199 bits (505), Expect = 4e-51
Identities = 124/334 (37%), Positives = 190/334 (56%), Gaps = 17/334 (5%)
Query: 29 GSAGHYE----LPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84
GS+G + +PWVEKYRP ++E+ E+ V+ L+ ++PN++ GPPGTGKT+
Sbjct: 27 GSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTS 86
Query: 85 SILCLARALLGPAL-KDAMLELNASNDRGIDVVRNKIKMFAQQKVT------LPKGRHKI 137
+IL AR L GP L + +LELNAS++RGI VVR K+K FAQ V+ P KI
Sbjct: 87 TILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKI 146
Query: 138 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ 197
+ILDEADSMT AQ ALRRTME SKTTRF L CN +IIEP+ SRC+ R+ L+D
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 198 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE 257
RL+++ +KE V +D+G+ ++ ++GD+R+A+ LQS G E KV +
Sbjct: 207 QQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTG--GKEITEKVITD 264
Query: 258 PHPLLVKEMIQ----HCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLK 313
++ E I C + + D+ ++ L G++ ++ + V +++ K
Sbjct: 265 IAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSDKQK 324
Query: 314 LEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQK 347
+++ +A+G + LQ+ L A + Q+
Sbjct: 325 SIITEKLAEVDKCLADGADEHLQLISLCATVMQQ 358
>gi|194306569 replication factor C 5 isoform 3 [Homo sapiens]
Length = 255
Score = 160 bits (404), Expect = 2e-39
Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 2/242 (0%)
Query: 102 MLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIY 161
+LELNAS+DRGID++R I FA + KG K++ILDEAD+MT AQ ALRR +E +
Sbjct: 2 VLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKF 60
Query: 162 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAI 221
++ TRF L CN KII +QSRC R+ LT ++ RL +V+E+E+V ++DG++A+
Sbjct: 61 TENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKAL 120
Query: 222 IFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKI 281
+ + GDMR+ALN LQST FG + E V+ P + ++ +N + AY+
Sbjct: 121 VTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 180
Query: 282 LAHLWHL-GYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGL 340
+ L L G + DI+ I +++ + ++ +++ G N +Q++ L
Sbjct: 181 ITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 240
Query: 341 LA 342
+A
Sbjct: 241 IA 242
>gi|108773789 replication factor C 3 isoform 2 [Homo sapiens]
Length = 305
Score = 103 bits (256), Expect = 3e-22
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 28/200 (14%)
Query: 38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 97
WV+KYRP L + +++ ++L + G+ P++++ GP G GK T I+C+ R L G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 98 LKDAM------------------------LELNASNDRGID--VVRNKIKMFAQ--QKVT 129
++ LE+N S+ D V++ +K AQ Q T
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 130 LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLR 189
+ K+++L E D +T AQ ALRRTME Y T R L CN++ K+I PI+SRC +R
Sbjct: 124 NSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Query: 190 YTKLTDAQILTRLMNVIEKE 209
+ I L V +KE
Sbjct: 184 VPAPSIEDICHVLSTVCKKE 203
>gi|4506489 replication factor C 3 isoform 1 [Homo sapiens]
Length = 356
Score = 103 bits (256), Expect = 3e-22
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 28/200 (14%)
Query: 38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 97
WV+KYRP L + +++ ++L + G+ P++++ GP G GK T I+C+ R L G
Sbjct: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
Query: 98 LKDAM------------------------LELNASNDRGID--VVRNKIKMFAQ--QKVT 129
++ LE+N S+ D V++ +K AQ Q T
Sbjct: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
Query: 130 LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLR 189
+ K+++L E D +T AQ ALRRTME Y T R L CN++ K+I PI+SRC +R
Sbjct: 124 NSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
Query: 190 YTKLTDAQILTRLMNVIEKE 209
+ I L V +KE
Sbjct: 184 VPAPSIEDICHVLSTVCKKE 203
>gi|32528306 replication factor C large subunit [Homo sapiens]
Length = 1147
Score = 60.1 bits (144), Expect = 3e-09
Identities = 58/239 (24%), Positives = 93/239 (38%), Gaps = 43/239 (17%)
Query: 36 LPWVEKYRPVKLNEIVGNEDTVSRLEVFAR--------------------------EGNV 69
L WV+KY+P L I+G + S R +
Sbjct: 584 LLWVDKYKPTSLKTIIGQQGDQSCANKLLRWLRNWQKSSSEDKKHAKFGKFSGKDDGSSF 643
Query: 70 PNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVR---------NKI 120
+++GPPG GKTT+ +L+ L + +ELNAS+ R ++ I
Sbjct: 644 KAALLSGPPGVGKTTTA-----SLVCQELGYSYVELNASDTRSKSSLKAIVAESLNNTSI 698
Query: 121 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP 180
K F +I+DE D M + + + K T+ + C +D+
Sbjct: 699 KGFYSNGAASSVSTKHALIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPK 758
Query: 181 IQSR---CAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNL 236
I+S C LR+ + QI +M++ KE + + II A D+RQ L+NL
Sbjct: 759 IRSLVHYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL 817
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 55.1 bits (131), Expect = 1e-07
Identities = 64/269 (23%), Positives = 101/269 (37%), Gaps = 49/269 (18%)
Query: 11 GEVEAQDSDPAPAFSKAPGSAGHYEL-------------PWVEKYRPVKLNEIVGNEDTV 57
G +A ++ A AF + G H P + RP L + G V
Sbjct: 187 GHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYFGQSKAV 246
Query: 58 SR---LEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM--LELNASNDRG 112
+ L +P++I+ GPPG GKTT LA + + K ++ + L+A+N +
Sbjct: 247 GQDTLLRSLLETNEIPSLILWGPPGCGKTT----LAHIIASNSKKHSIRFVTLSATNAKT 302
Query: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172
D VR+ IK +K R I+ +DE Q +E + T A N
Sbjct: 303 ND-VRDVIKQAQNEKSFFK--RKTILFIDEIHRFNKSQQDTFLPHVECGTITLIGATTEN 359
Query: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDD---------------- 216
S ++ + SRC V+ KL ++T LM I + D
Sbjct: 360 PSFQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSE 419
Query: 217 --------GLEAIIFTAQGDMRQALNNLQ 237
++ + + + GD R LN LQ
Sbjct: 420 PAMFIEDKAVDTLAYLSDGDARAGLNGLQ 448
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 45.1 bits (105), Expect = 1e-04
Identities = 62/269 (23%), Positives = 97/269 (36%), Gaps = 74/269 (27%)
Query: 11 GEVEAQDSDPAPAFSKAPGSAGHYEL-------------PWVEKYRPVKLNEIVGNEDTV 57
G +A ++ A AF + G H P + RP L + G V
Sbjct: 187 GHWDADAAEAATAFGASGGGRPHPRALAAEEIRQMLQGKPLADTMRPDTLQDYFGQSKAV 246
Query: 58 SR---LEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAM--LELNASNDRG 112
+ L +P++I+ GPPG GKTT LA + + K ++ + L+A+N +
Sbjct: 247 GQDTLLRSLLETNEIPSLILWGPPGCGKTT----LAHIIASNSKKHSIRFVTLSATNAKT 302
Query: 113 IDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACN 172
D VR+ IK +K R I+ +DE RF N
Sbjct: 303 ND-VRDVIKQAQNEKSFFK--RKTILFIDEIH---------------------RF----N 334
Query: 173 ASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDD---------------- 216
S ++ + SRC V+ KL ++T LM I + D
Sbjct: 335 KSQQVNAALLSRCRVIVLEKLPVEAMVTILMRAINSLGIHVLDSSRPTDPLSHSSNSSSE 394
Query: 217 --------GLEAIIFTAQGDMRQALNNLQ 237
++ + + + GD R LN LQ
Sbjct: 395 PAMFIEDKAVDTLAYLSDGDARAGLNGLQ 423
>gi|27501458 CTF18, chromosome transmission fidelity factor 18
homolog [Homo sapiens]
Length = 975
Score = 43.5 bits (101), Expect = 3e-04
Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 32/196 (16%)
Query: 73 IIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTL-P 131
++ GPPG GKTT +AR +++E+NAS+DR +V R +I+ Q + L
Sbjct: 371 LLCGPPGLGKTTLAHVIARHA-----GYSVVEMNASDDRSPEVFRTRIEAATQMESVLGA 425
Query: 132 KGRHKIIILDEADSMTDGAQQAL-----------------------RRTMEIYSKTTRFA 168
G+ +++DE D A L R
Sbjct: 426 GGKPNCLVIDEIDGAPVAAINVLLSILNRKGPQEVGPQGPAVPSGGGRRRRAEGGLLMRP 485
Query: 169 LACNASDKI---IEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTA 225
+ C +D+ + ++ + +L + ++++ RL V ++ + L A+
Sbjct: 486 IICICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKT 545
Query: 226 QGDMRQALNNLQSTFS 241
D+R +N LQ +S
Sbjct: 546 DNDIRACINTLQFLYS 561
>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 42.4 bits (98), Expect = 6e-04
Identities = 50/256 (19%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPN--------IIIAGPPGTGKTTSILC 88
PWV+KY+P +E+ ++ + +E + + + ++I GPPG GKTT++
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 89 LAR-------ALLGPALKDAMLE-----LNASNDRGIDVVRNKIKMFAQQKVTLPKGR-- 134
L++ + P L D + N + + +++I +F + + K
Sbjct: 139 LSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKL 198
Query: 135 ----------HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKII------ 178
KII++++ + L + Y + R L SD +
Sbjct: 199 QMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQR 258
Query: 179 ----EPIQSRCAV--LRYTKLTDAQILTRLMNVIEKE------RVPYTD-DGLEAIIFTA 225
+ IQ C++ + + + ++ L ++ E ++ D LE +
Sbjct: 259 LLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGC 318
Query: 226 QGDMRQALNNLQSTFS 241
GD+R A+N+LQ + S
Sbjct: 319 SGDIRSAINSLQFSSS 334
>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 42.4 bits (98), Expect = 6e-04
Identities = 50/256 (19%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPN--------IIIAGPPGTGKTTSILC 88
PWV+KY+P +E+ ++ + +E + + + ++I GPPG GKTT++
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 89 LAR-------ALLGPALKDAMLE-----LNASNDRGIDVVRNKIKMFAQQKVTLPKGR-- 134
L++ + P L D + N + + +++I +F + + K
Sbjct: 139 LSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKL 198
Query: 135 ----------HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKII------ 178
KII++++ + L + Y + R L SD +
Sbjct: 199 QMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQR 258
Query: 179 ----EPIQSRCAV--LRYTKLTDAQILTRLMNVIEKE------RVPYTD-DGLEAIIFTA 225
+ IQ C++ + + + ++ L ++ E ++ D LE +
Sbjct: 259 LLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGC 318
Query: 226 QGDMRQALNNLQSTFS 241
GD+R A+N+LQ + S
Sbjct: 319 SGDIRSAINSLQFSSS 334
>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 42.4 bits (98), Expect = 6e-04
Identities = 50/256 (19%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPN--------IIIAGPPGTGKTTSILC 88
PWV+KY+P +E+ ++ + +E + + + ++I GPPG GKTT++
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 89 LAR-------ALLGPALKDAMLE-----LNASNDRGIDVVRNKIKMFAQQKVTLPKGR-- 134
L++ + P L D + N + + +++I +F + + K
Sbjct: 139 LSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKL 198
Query: 135 ----------HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKII------ 178
KII++++ + L + Y + R L SD +
Sbjct: 199 QMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQR 258
Query: 179 ----EPIQSRCAV--LRYTKLTDAQILTRLMNVIEKE------RVPYTD-DGLEAIIFTA 225
+ IQ C++ + + + ++ L ++ E ++ D LE +
Sbjct: 259 LLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGC 318
Query: 226 QGDMRQALNNLQSTFS 241
GD+R A+N+LQ + S
Sbjct: 319 SGDIRSAINSLQFSSS 334
>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 42.4 bits (98), Expect = 6e-04
Identities = 50/256 (19%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPN--------IIIAGPPGTGKTTSILC 88
PWV+KY+P +E+ ++ + +E + + + ++I GPPG GKTT++
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 89 LAR-------ALLGPALKDAMLE-----LNASNDRGIDVVRNKIKMFAQQKVTLPKGR-- 134
L++ + P L D + N + + +++I +F + + K
Sbjct: 139 LSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKL 198
Query: 135 ----------HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKII------ 178
KII++++ + L + Y + R L SD +
Sbjct: 199 QMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQR 258
Query: 179 ----EPIQSRCAV--LRYTKLTDAQILTRLMNVIEKE------RVPYTD-DGLEAIIFTA 225
+ IQ C++ + + + ++ L ++ E ++ D LE +
Sbjct: 259 LLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGC 318
Query: 226 QGDMRQALNNLQSTFS 241
GD+R A+N+LQ + S
Sbjct: 319 SGDIRSAINSLQFSSS 334
>gi|4506383 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 42.4 bits (98), Expect = 6e-04
Identities = 50/256 (19%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPN--------IIIAGPPGTGKTTSILC 88
PWV+KY+P +E+ ++ + +E + + + ++I GPPG GKTT++
Sbjct: 79 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 138
Query: 89 LAR-------ALLGPALKDAMLE-----LNASNDRGIDVVRNKIKMFAQQKVTLPKGR-- 134
L++ + P L D + N + + +++I +F + + K
Sbjct: 139 LSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKL 198
Query: 135 ----------HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKII------ 178
KII++++ + L + Y + R L SD +
Sbjct: 199 QMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQR 258
Query: 179 ----EPIQSRCAV--LRYTKLTDAQILTRLMNVIEKE------RVPYTD-DGLEAIIFTA 225
+ IQ C++ + + + ++ L ++ E ++ D LE +
Sbjct: 259 LLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGC 318
Query: 226 QGDMRQALNNLQSTFS 241
GD+R A+N+LQ + S
Sbjct: 319 SGDIRSAINSLQFSSS 334
>gi|19718786 RAD17 homolog isoform 2 [Homo sapiens]
Length = 681
Score = 42.4 bits (98), Expect = 6e-04
Identities = 50/256 (19%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 37 PWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPN--------IIIAGPPGTGKTTSILC 88
PWV+KY+P +E+ ++ + +E + + + ++I GPPG GKTT++
Sbjct: 90 PWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKI 149
Query: 89 LAR-------ALLGPALKDAMLE-----LNASNDRGIDVVRNKIKMFAQQKVTLPKGR-- 134
L++ + P L D + N + + +++I +F + + K
Sbjct: 150 LSKEHGIQVQEWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKL 209
Query: 135 ----------HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKII------ 178
KII++++ + L + Y + R L SD +
Sbjct: 210 QMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLIFIISDSLSGDNNQR 269
Query: 179 ----EPIQSRCAV--LRYTKLTDAQILTRLMNVIEKE------RVPYTD-DGLEAIIFTA 225
+ IQ C++ + + + ++ L ++ E ++ D LE +
Sbjct: 270 LLFPKEIQEECSISNISFNPVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGC 329
Query: 226 QGDMRQALNNLQSTFS 241
GD+R A+N+LQ + S
Sbjct: 330 SGDIRSAINSLQFSSS 345
>gi|4502703 cell division cycle 6 protein [Homo sapiens]
Length = 560
Score = 37.4 bits (85), Expect = 0.021
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 56/208 (26%)
Query: 71 NIIIAGPPGTGKTTSILCLARAL-------------------------LGPALKDAMLEL 105
++ ++G PGTGKT CL+R L + PA+ + +
Sbjct: 197 SLYLSGAPGTGKTA---CLSRILQDLKKELKGFKTIMLNCMSLRTAQAVFPAIAQEICQE 253
Query: 106 NASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTME------ 159
S G D++R ++ +T KG +++LDE D + Q L E
Sbjct: 254 EVSRPAGKDMMRK-----LEKHMTAEKGPMIVLVLDEMDQLDSKGQDVLYTLFEWPWLSN 308
Query: 160 IYSKTTRFALACNASDKIIEPIQSR--C--AVLRYTKLTDAQILTRL---MNVIEKERVP 212
+ A + +D+I+ +Q+R C +L + T QI+T L +N + +++V
Sbjct: 309 SHLVLIGIANTLDLTDRILPRLQAREKCKPQLLNFPPYTRNQIVTILQDRLNQVSRDQV- 367
Query: 213 YTDDGLEAIIFTAQ------GDMRQALN 234
D+ A+ F A+ GD+R+AL+
Sbjct: 368 -LDNA--AVQFCARKVSAVSGDVRKALD 392
>gi|22749187 putative adenylate kinase-like protein C9orf98 [Homo
sapiens]
Length = 479
Score = 35.4 bits (80), Expect = 0.078
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 68 NVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQK 127
NVP I+I GPP +GKTT + L + L L L LN + + R ++ Q+K
Sbjct: 56 NVPRIVILGPPASGKTTIAMWLCKHLNSSLLTLENLILNEFSYTATEARR----LYLQRK 111
Query: 128 VTLPKGRHKIII---LDEADSMTDG---------AQQALRRTMEIYSKTTRFALACNASD 175
T+P +I L E D + G +QALR ++ T R + +A D
Sbjct: 112 -TVPSALLVQLIQERLAEEDCIKQGWILDGIPETREQALR--IQTLGITPRHVIVLSAPD 168
Query: 176 KII 178
++
Sbjct: 169 TVL 171
>gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens]
Length = 633
Score = 35.4 bits (80), Expect = 0.078
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 71 NIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTL 130
NI++ GP G+GKT LA+ L P L + G D+ K+ +
Sbjct: 288 NILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQAGYVGEDIESVIAKLLQDANYNV 347
Query: 131 PKGRHKIIILDEADSM-------------TDGAQQALRRTME 159
K + I+ LDE D + +G QQ L + +E
Sbjct: 348 EKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLE 389
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 35.4 bits (80), Expect = 0.078
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 45 VKLNEIVGNEDTVSRL----------EVFAREGNVP--NIIIAGPPGTGKTTSILCLARA 92
VK ++ GN+ T+ + EV+ G VP +++ GPPG GKT +A
Sbjct: 156 VKFEDVGGNDMTLKEVCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGE 215
Query: 93 LLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 147
L P LK A E+ S G K++ +Q V+ II +DE D++T
Sbjct: 216 LDLPILKVAAPEI-VSGVSGES--EQKLRELFEQAVS---NAPCIIFIDEIDAIT 264
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 35.4 bits (80), Expect = 0.078
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 45 VKLNEIVGNEDTVSRL----------EVFAREGNVP--NIIIAGPPGTGKTTSILCLARA 92
VK ++ GN+ T+ + EV+ G VP +++ GPPG GKT +A
Sbjct: 262 VKFEDVGGNDMTLKEVCKMLIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGE 321
Query: 93 LLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 147
L P LK A E+ S G K++ +Q V+ II +DE D++T
Sbjct: 322 LDLPILKVAAPEI-VSGVSGES--EQKLRELFEQAVS---NAPCIIFIDEIDAIT 370
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 34.7 bits (78), Expect = 0.13
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 45/135 (33%)
Query: 31 AGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFARE------------------------ 66
+G ++ W EKY+P +E++GNE + +L + ++
Sbjct: 1047 SGTEDMLWTEKYQPQTASELIGNELAIKKLHSWLKDWKRRAELEERQNLKGKRDEKHEDF 1106
Query: 67 -GNVP---------------NIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASND 110
G + ++I GP G GKT ++ A+ L + E+NAS+
Sbjct: 1107 SGGIDFKGSSDDEEESRLCNTVLITGPTGVGKTAAVYACAQ-----ELGFKIFEVNASSQ 1161
Query: 111 RGIDVVRNKIKMFAQ 125
R + +++K Q
Sbjct: 1162 RSGRQILSQLKEATQ 1176
>gi|31742536 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 34.7 bits (78), Expect = 0.13
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 67 GNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNAS-NDRGIDVVRNKIKMFAQ 125
G I++ GPPGTGKT C+A + L + G +VR +FA
Sbjct: 432 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVR---ALFAV 488
Query: 126 QKVTLPKGRHKIIILDEADSMT----DGAQQALRR-----TMEIYSKTTR------FALA 170
+ P +I +DE DS+ DG ++ RR +++ TT A
Sbjct: 489 ARCQQP----AVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 544
Query: 171 CNASDKIIEPIQSRCAVLRYTKLTDAQILTRL-MNVIEKERVPYTDDGLEAII 222
N +I E + R Y L +A ++ +N++ KE+ +++ +E I+
Sbjct: 545 TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIV 597
>gi|112789543 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 34.7 bits (78), Expect = 0.13
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 24/173 (13%)
Query: 67 GNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNAS-NDRGIDVVRNKIKMFAQ 125
G I++ GPPGTGKT C+A + L + G +VR +FA
Sbjct: 432 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVR---ALFAV 488
Query: 126 QKVTLPKGRHKIIILDEADSMT----DGAQQALRR-----TMEIYSKTTR------FALA 170
+ P +I +DE DS+ DG ++ RR +++ TT A
Sbjct: 489 ARCQQP----AVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 544
Query: 171 CNASDKIIEPIQSRCAVLRYTKLTDAQILTRL-MNVIEKERVPYTDDGLEAII 222
N +I E + R Y L +A ++ +N++ KE+ +++ +E I+
Sbjct: 545 TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIV 597
>gi|21327685 YME1-like 1 isoform 1 [Homo sapiens]
Length = 773
Score = 34.3 bits (77), Expect = 0.17
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 67 GNVPN-IIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDR-----GIDVVRNKI 120
G +P I++ GPPGTGKT LARA+ G A + D G +RN
Sbjct: 369 GKLPKGILLVGPPGTGKT----LLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRN-- 422
Query: 121 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 165
+F + K P +I +DE DS+ + + M YS+ T
Sbjct: 423 -LFREAKANAP----CVIFIDELDSV---GGKRIESPMHPYSRQT 459
>gi|7657689 YME1-like 1 isoform 3 [Homo sapiens]
Length = 716
Score = 34.3 bits (77), Expect = 0.17
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 67 GNVPN-IIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASNDR-----GIDVVRNKI 120
G +P I++ GPPGTGKT LARA+ G A + D G +RN
Sbjct: 312 GKLPKGILLVGPPGTGKT----LLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRN-- 365
Query: 121 KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTT 165
+F + K P +I +DE DS+ + + M YS+ T
Sbjct: 366 -LFREAKANAP----CVIFIDELDSV---GGKRIESPMHPYSRQT 402
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,941,397
Number of Sequences: 37866
Number of extensions: 546697
Number of successful extensions: 1699
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 101
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.