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Search of human proteins with 31563398
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo
sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo ... 231 1e-61
gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo ... 224 1e-59
gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo ... 206 3e-54
gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Hom... 179 5e-46
gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo ... 119 7e-28
gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo ... 94 2e-20
gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Hom... 67 3e-12
gi|31563424 chemokine-like factor superfamily 1 isoform 12 [Homo... 58 1e-09
gi|8393581 chemokine-like factor isoform a [Homo sapiens] 37 0.004
gi|32307154 chemokine-like factor isoform b [Homo sapiens] 37 0.004
gi|93141024 chemokine-like factor isoform e [Homo sapiens] 30 0.54
gi|195972903 zinc finger protein 385A isoform a [Homo sapiens] 29 0.91
gi|24308079 zinc finger protein 385A isoform c [Homo sapiens] 29 0.91
gi|116284390 glutamate receptor, ionotrophic, AMPA 4 isoform 3 p... 27 4.5
gi|164419739 glutamate receptor, ionotrophic, AMPA 4 isoform 3 p... 27 4.5
gi|164419736 glutamate receptor, ionotrophic, AMPA 4 isoform 2 p... 27 4.5
gi|164419734 glutamate receptor, ionotrophic, AMPA 4 isoform 1 p... 27 4.5
gi|33469919 minichromosome maintenance complex component 4 [Homo... 26 5.9
gi|33469917 minichromosome maintenance complex component 4 [Homo... 26 5.9
gi|92110055 histidine decarboxylase [Homo sapiens] 26 7.7
>gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo
sapiens]
Length = 116
Score = 231 bits (588), Expect = 1e-61
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
Query: 61 SLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA 116
SLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA
Sbjct: 61 SLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA 116
>gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo
sapiens]
Length = 122
Score = 224 bits (571), Expect = 1e-59
Identities = 116/122 (95%), Positives = 116/122 (95%), Gaps = 6/122 (4%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL------DLTNSIITAVFLSVVAILAMQEKKRRH 54
MDPEHAKPESSEAPSGNLKQPETAAAL DLTNSIITAVFLSVVAILAMQEKKRRH
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVDLTNSIITAVFLSVVAILAMQEKKRRH 60
Query: 55 LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR 114
LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR
Sbjct: 61 LLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQR 120
Query: 115 PA 116
PA
Sbjct: 121 PA 122
>gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo
sapiens]
Length = 169
Score = 206 bits (524), Expect = 3e-54
Identities = 116/169 (68%), Positives = 116/169 (68%), Gaps = 53/169 (31%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL--------------------------------- 27
MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF 60
Query: 28 --------------------DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAV 67
DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAV
Sbjct: 61 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAV 120
Query: 68 IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA 116
IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA
Sbjct: 121 IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPETGPDAPQRPA 169
>gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Homo
sapiens]
Length = 286
Score = 179 bits (453), Expect = 5e-46
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 27 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLK 86
LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLK
Sbjct: 197 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLK 256
Query: 87 RFLGVEVERKLSPAKDAYPETGPDAPQRPA 116
RFLGVEVERKLSPAKDAYPETGPDAPQRPA
Sbjct: 257 RFLGVEVERKLSPAKDAYPETGPDAPQRPA 286
Score = 63.2 bits (152), Expect = 4e-11
Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAV 37
MDPEHAKPESSEAPSGNLKQPETAAAL + S++++V
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVVSSV 37
>gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo
sapiens]
Length = 61
Score = 119 bits (297), Expect = 7e-28
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
>gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo
sapiens]
Length = 114
Score = 94.4 bits (233), Expect = 2e-20
Identities = 60/113 (53%), Positives = 60/113 (53%), Gaps = 53/113 (46%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL--------------------------------- 27
MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALSLILGALACFIITQANESFITITSLEICIVVFF 60
Query: 28 --------------------DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 61 ILIYVLTLHHLLTYLHWPLLDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 113
>gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Homo
sapiens]
Length = 231
Score = 67.0 bits (162), Expect = 3e-12
Identities = 34/34 (100%), Positives = 34/34 (100%)
Query: 27 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 60
LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG
Sbjct: 197 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGG 230
Score = 63.2 bits (152), Expect = 4e-11
Identities = 29/37 (78%), Positives = 34/37 (91%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAALDLTNSIITAV 37
MDPEHAKPESSEAPSGNLKQPETAAAL + S++++V
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAALASSGSVVSSV 37
>gi|31563424 chemokine-like factor superfamily 1 isoform 12 [Homo
sapiens]
Length = 28
Score = 58.2 bits (139), Expect = 1e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Query: 1 MDPEHAKPESSEAPSGNLKQPETAAAL 27
MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1 MDPEHAKPESSEAPSGNLKQPETAAAL 27
>gi|8393581 chemokine-like factor isoform a [Homo sapiens]
Length = 152
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 27 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCI-DAFVVTTKMRTN 84
LD+ NS++T VF+ +V++LA+ + L VGG + VCC+ D ++ K+ N
Sbjct: 79 LDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGVFALVTAVCCLADGALIYRKLLFN 135
>gi|32307154 chemokine-like factor isoform b [Homo sapiens]
Length = 99
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 27 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSLCLTAVIVCCI-DAFVVTTKMRTN 84
LD+ NS++T VF+ +V++LA+ + L VGG + VCC+ D ++ K+ N
Sbjct: 26 LDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGVFALVTAVCCLADGALIYRKLLFN 82
>gi|93141024 chemokine-like factor isoform e [Homo sapiens]
Length = 113
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 27 LDLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGSL 62
LD+ NS++T VF+ +V++LA+ + L VGG L
Sbjct: 79 LDIINSLVTTVFMLIVSVLALIPETT--TLTVGGGL 112
>gi|195972903 zinc finger protein 385A isoform a [Homo sapiens]
Length = 386
Score = 28.9 bits (63), Expect = 0.91
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 48 QEKKRRHLLYVGGSLCLTAV-IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPE 106
+E+K + LLY +LC AV + ++A TK +T L E L P K AYP
Sbjct: 193 EEEKAKRLLYC--ALCKVAVNSLSQLEAHNKGTKHKTIL------EARSGLGPIK-AYPR 243
Query: 107 TGPDAPQRP 115
GP P P
Sbjct: 244 LGPPTPGEP 252
>gi|24308079 zinc finger protein 385A isoform c [Homo sapiens]
Length = 366
Score = 28.9 bits (63), Expect = 0.91
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 48 QEKKRRHLLYVGGSLCLTAV-IVCCIDAFVVTTKMRTNLKRFLGVEVERKLSPAKDAYPE 106
+E+K + LLY +LC AV + ++A TK +T L E L P K AYP
Sbjct: 173 EEEKAKRLLYC--ALCKVAVNSLSQLEAHNKGTKHKTIL------EARSGLGPIK-AYPR 223
Query: 107 TGPDAPQRP 115
GP P P
Sbjct: 224 LGPPTPGEP 232
>gi|116284390 glutamate receptor, ionotrophic, AMPA 4 isoform 3
precursor [Homo sapiens]
Length = 433
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HAKPESSEAPSG---NLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLL 56
+ P +SEAP ++ ETA + +TN+ + V AI + +K+ H L
Sbjct: 52 NTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTL 106
>gi|164419739 glutamate receptor, ionotrophic, AMPA 4 isoform 3
precursor [Homo sapiens]
Length = 433
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HAKPESSEAPSG---NLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLL 56
+ P +SEAP ++ ETA + +TN+ + V AI + +K+ H L
Sbjct: 52 NTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTL 106
>gi|164419736 glutamate receptor, ionotrophic, AMPA 4 isoform 2
precursor [Homo sapiens]
Length = 884
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HAKPESSEAPSG---NLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLL 56
+ P +SEAP ++ ETA + +TN+ + V AI + +K+ H L
Sbjct: 52 NTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTL 106
>gi|164419734 glutamate receptor, ionotrophic, AMPA 4 isoform 1
precursor [Homo sapiens]
Length = 902
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 5 HAKPESSEAPSG---NLKQPETAAALDLTNSIITAVFLSVVAILAMQEKKRRHLL 56
+ P +SEAP ++ ETA + +TN+ + V AI + +K+ H L
Sbjct: 52 NTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTL 106
>gi|33469919 minichromosome maintenance complex component 4 [Homo
sapiens]
Length = 863
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 47 MQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERK-LSPAK 101
M++ + R L+ G+L L+ +CCID F KM + + L +E++ LS AK
Sbjct: 548 MKDPETRQLVLQTGALVLSDNGICCIDEF---DKMNESTRSVLHEVMEQQTLSIAK 600
>gi|33469917 minichromosome maintenance complex component 4 [Homo
sapiens]
Length = 863
Score = 26.2 bits (56), Expect = 5.9
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 47 MQEKKRRHLLYVGGSLCLTAVIVCCIDAFVVTTKMRTNLKRFLGVEVERK-LSPAK 101
M++ + R L+ G+L L+ +CCID F KM + + L +E++ LS AK
Sbjct: 548 MKDPETRQLVLQTGALVLSDNGICCIDEF---DKMNESTRSVLHEVMEQQTLSIAK 600
>gi|92110055 histidine decarboxylase [Homo sapiens]
Length = 662
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 85 LKRFLGVEVERKLSPAKDAYPETGPDA 111
+KR G+ +E L P D + E PDA
Sbjct: 534 MKRENGLHLETLLDPVDDCFSEEAPDA 560
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,643,411
Number of Sequences: 37866
Number of extensions: 159109
Number of successful extensions: 553
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 24
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.