Guide to the Human Genome
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Name: HDC Sequence: fasta or formatted (662aa) NCBI GI: 92110055
Description:

histidine decarboxylase

Referenced in:

Histamine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         50           2
 C cysteine            2.9         19           2
 D aspartate           5.1         34           2
 E glutamate           5.4         36           2
 F phenylalanine       5.0         33           1
 G glycine             5.7         38           3
 H histidine           2.7         18           3
 I isoleucine          4.7         31           2
 K lysine              5.6         37           3
 L leucine            10.1         67           2
 M methionine          3.0         20           3
 N asparagine          2.6         17           1
 P proline             6.0         40           1
 Q glutamine           4.1         27           2
 R arginine            5.7         38           2
 S serine              8.6         57           2
 T threonine           4.7         31           2
 V valine              6.5         43           2
 W tryptophan          1.8         12           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   histidine decarboxylase 
DDC                   0.386   dopa decarboxylase (aromatic L-amino acid decarboxy...
DDC                   0.386   dopa decarboxylase (aromatic L-amino acid decarboxyla...
GADL1                 0.079   glutamate decarboxylase-like 1 
GAD1                  0.074   glutamate decarboxylase 1 isoform GAD67 
GAD2                  0.074   glutamate decarboxylase 2 
GAD2                  0.074   glutamate decarboxylase 2 
CSAD                  0.064   cysteine sulfinic acid decarboxylase 
PDXDC1                0.020   pyridoxal-dependent decarboxylase domain containing...
F5                    0.005   coagulation factor V precursor 
TTLL13                0.004   tubulin tyrosine ligase-like family, member 13 [Homo...
LRBA                  0.004   LPS-responsive vesicle trafficking, beach and ancho...
ILF2                  0.004   interleukin enhancer binding factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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