Guide to the Human Genome
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Search of human proteins with 31563344

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
         (505 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                1035   0.0  
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                 993   0.0  
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                986   0.0  
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                  971   0.0  
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                 800   0.0  
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                 800   0.0  
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                      745   0.0  
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                    745   0.0  
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                      740   0.0  
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]                  399   e-111
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]                  397   e-111
gi|189083681 paired box gene 6 isoform a [Homo sapiens]               255   8e-68
gi|4505615 paired box gene 6 isoform a [Homo sapiens]                 255   8e-68
gi|4580424 paired box gene 6 isoform b [Homo sapiens]                 245   6e-65
gi|9951920 paired box 5 [Homo sapiens]                                227   2e-59
gi|34878709 paired box protein 2 isoform c [Homo sapiens]             220   2e-57
gi|34878716 paired box protein 2 isoform d [Homo sapiens]             219   4e-57
gi|34878701 paired box protein 2 isoform b [Homo sapiens]             216   4e-56
gi|34878703 paired box protein 2 isoform e [Homo sapiens]             210   2e-54
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]                  209   5e-54
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]                  207   1e-53
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]                  207   1e-53
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]                  207   1e-53
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]                  207   1e-53
gi|34878699 paired box protein 2 isoform a [Homo sapiens]             207   2e-53
gi|197276661 paired box 1 [Homo sapiens]                              198   8e-51
gi|7242167 paired box 9 [Homo sapiens]                                192   8e-49
gi|170784824 paired box 4 [Homo sapiens]                              183   4e-46
gi|24497589 aristaless related homeobox [Homo sapiens]                111   1e-24
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]   104   2e-22

>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score = 1035 bits (2677), Expect = 0.0
 Identities = 505/505 (100%), Positives = 505/505 (100%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420

Query: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480
           PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480

Query: 481 PDIAWFQILLNTFDKSSGEEEDLEQ 505
           PDIAWFQILLNTFDKSSGEEEDLEQ
Sbjct: 481 PDIAWFQILLNTFDKSSGEEEDLEQ 505


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score =  993 bits (2566), Expect = 0.0
 Identities = 484/484 (100%), Positives = 484/484 (100%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420

Query: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480
           PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480

Query: 481 PDIA 484
           PDIA
Sbjct: 481 PDIA 484


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score =  986 bits (2549), Expect = 0.0
 Identities = 483/484 (99%), Positives = 483/484 (99%), Gaps = 1/484 (0%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179

Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 180 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 239

Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 240 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 299

Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 300 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359

Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 360 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 419

Query: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480
           PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK
Sbjct: 420 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 479

Query: 481 PDIA 484
           PDIA
Sbjct: 480 PDIA 483


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score =  971 bits (2511), Expect = 0.0
 Identities = 474/474 (100%), Positives = 474/474 (100%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420

Query: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
           PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score =  800 bits (2065), Expect = 0.0
 Identities = 392/398 (98%), Positives = 396/398 (99%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTN 398
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQV  ++++
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVPFIISS 398


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score =  800 bits (2065), Expect = 0.0
 Identities = 392/398 (98%), Positives = 396/398 (99%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTN 398
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQV  ++++
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVPFIISS 398


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score =  745 bits (1923), Expect = 0.0
 Identities = 372/478 (77%), Positives = 410/478 (85%), Gaps = 16/478 (3%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           M  L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+QV TPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEE-EADLERKEAEE 179
           YKRENPGMFSWEIRD+LLKD  CDR+TVPSVSSISR+LR KFGK EEE EAD   K+ ++
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRVLRIKFGKKEEEDEAD---KKEDD 177

Query: 180 SEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFE 239
            EKKAKHSIDGIL ++ +  + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+AFE
Sbjct: 178 GEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFE 235

Query: 240 RTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAM 299
           RTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT M
Sbjct: 236 RTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGM 295

Query: 300 PTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAYCL 356
           PTLP YQL +++Y  T+I Q   D  STVHRPQPLPPST+HQ   +   +  D+SSAY  
Sbjct: 296 PTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY-- 350

Query: 357 PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLT 416
              RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N   VP QPQ D+++SPL 
Sbjct: 351 -GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISPLH 408

Query: 417 GGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
           GGL+  T++SASCSQR D +K  DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQS
Sbjct: 409 GGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQS 466


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score =  745 bits (1923), Expect = 0.0
 Identities = 374/490 (76%), Positives = 416/490 (84%), Gaps = 18/490 (3%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           M  L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+QV TPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPS--VSSISRILRSKFGKGEEE-EADLERKEA 177
           YKRENPGMFSWEIRD+LLKD  CDR+TVPS  VSSISR+LR KFGK EEE EAD   K+ 
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEEEDEAD---KKE 177

Query: 178 EESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 237
           ++ EKKAKHSIDGIL ++ +  + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+A
Sbjct: 178 DDGEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKA 235

Query: 238 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPT 297
           FERTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT
Sbjct: 236 FERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPT 295

Query: 298 AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAY 354
            MPTLP YQL +++Y  T+I Q   D  STVHRPQPLPPST+HQ   +   +  D+SSAY
Sbjct: 296 GMPTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY 352

Query: 355 CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSP 414
                RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N   VP QPQ D+++SP
Sbjct: 353 ---GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISP 408

Query: 415 LTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
           L GGL+  T++SASCSQR D +K  DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQ+
Sbjct: 409 LHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQT 468

Query: 475 AFHYLKPDIA 484
           A  YL  +++
Sbjct: 469 AVDYLAKNVS 478


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score =  740 bits (1910), Expect = 0.0
 Identities = 372/480 (77%), Positives = 410/480 (85%), Gaps = 18/480 (3%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           M  L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+QV TPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPS--VSSISRILRSKFGKGEEE-EADLERKEA 177
           YKRENPGMFSWEIRD+LLKD  CDR+TVPS  VSSISR+LR KFGK EEE EAD   K+ 
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEEEDEAD---KKE 177

Query: 178 EESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 237
           ++ EKKAKHSIDGIL ++ +  + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+A
Sbjct: 178 DDGEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKA 235

Query: 238 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPT 297
           FERTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT
Sbjct: 236 FERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPT 295

Query: 298 AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAY 354
            MPTLP YQL +++Y  T+I Q   D  STVHRPQPLPPST+HQ   +   +  D+SSAY
Sbjct: 296 GMPTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY 352

Query: 355 CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSP 414
                RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N   VP QPQ D+++SP
Sbjct: 353 ---GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISP 408

Query: 415 LTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
           L GGL+  T++SASCSQR D +K  DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQS
Sbjct: 409 LHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQS 468


>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
          Length = 206

 Score =  399 bits (1025), Expect = e-111
 Identities = 196/198 (98%), Positives = 196/198 (98%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 181 EKKAKHSIDGILSERASA 198
           EKKAKHSIDGILSER  A
Sbjct: 181 EKKAKHSIDGILSERGKA 198


>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
          Length = 215

 Score =  397 bits (1021), Expect = e-111
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 181 EKKAKHSIDGILSER 195
           EKKAKHSIDGILSER
Sbjct: 181 EKKAKHSIDGILSER 195


>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  255 bits (651), Expect = 8e-68
 Identities = 166/410 (40%), Positives = 227/410 (55%), Gaps = 53/410 (12%)

Query: 38  VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
           VNQLGGVF+NGRPLP+  R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 8   VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67

Query: 98  PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
           P AIGGSKP+ V TP+V  KI +YKRE P +F+WEIRD+LL + VC  + +PSVSSI+R+
Sbjct: 68  PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126

Query: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
           LR+   + ++  AD        L  +      +   +   S+ G  ++     Q      
Sbjct: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186

Query: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
               S  G D D ++  L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246

Query: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
             L EAR+QVWFSNRRA+WR++         N        P+ +P   ++  S + YQP 
Sbjct: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298

Query: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
            IPQ  +  SS                 +   P  PS    + +P  P      SS +  
Sbjct: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357

Query: 356 LPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 405
           LP++        D++ PP   ++  +  +G   +    GL++    VP Q
Sbjct: 358 LPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406


>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  255 bits (651), Expect = 8e-68
 Identities = 166/410 (40%), Positives = 227/410 (55%), Gaps = 53/410 (12%)

Query: 38  VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
           VNQLGGVF+NGRPLP+  R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 8   VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67

Query: 98  PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
           P AIGGSKP+ V TP+V  KI +YKRE P +F+WEIRD+LL + VC  + +PSVSSI+R+
Sbjct: 68  PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126

Query: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
           LR+   + ++  AD        L  +      +   +   S+ G  ++     Q      
Sbjct: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186

Query: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
               S  G D D ++  L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246

Query: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
             L EAR+QVWFSNRRA+WR++         N        P+ +P   ++  S + YQP 
Sbjct: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298

Query: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
            IPQ  +  SS                 +   P  PS    + +P  P      SS +  
Sbjct: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357

Query: 356 LPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 405
           LP++        D++ PP   ++  +  +G   +    GL++    VP Q
Sbjct: 358 LPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406


>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
          Length = 436

 Score =  245 bits (626), Expect = 6e-65
 Identities = 166/424 (39%), Positives = 227/424 (53%), Gaps = 67/424 (15%)

Query: 38  VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
           VNQLGGVF+NGRPLP+  R KIVE+AH G RPC ISR L+              VS+GCV
Sbjct: 8   VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67

Query: 84  SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
           SKIL RY ETGSIRP AIGGSKP+ V TP+V  KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 68  SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126

Query: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGIL 192
             + +PSVSSI+R+LR+   + ++  AD        L  +      +   +   S+ G  
Sbjct: 127 TNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 186

Query: 193 SERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 241
           ++     Q          S  G D D ++  L LKRK +R+RT+FT EQ+E LE+ FERT
Sbjct: 187 TQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERT 246

Query: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
           HYPD++ RE LA +  L EAR+QVWFSNRRA+WR++         N        P+ +P 
Sbjct: 247 HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPI 301

Query: 302 LPTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPS 346
             ++  S + YQP  IPQ  +  SS                 +   P  PS    + +P 
Sbjct: 302 SSSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPM 357

Query: 347 NP-----DSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
            P      SS +  LP++        D++ PP   ++  +  +G   +    GL++    
Sbjct: 358 QPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVS 416

Query: 402 VPHQ 405
           VP Q
Sbjct: 417 VPVQ 420


>gi|9951920 paired box 5 [Homo sapiens]
          Length = 391

 Score =  227 bits (578), Expect = 2e-59
 Identities = 152/375 (40%), Positives = 199/375 (53%), Gaps = 44/375 (11%)

Query: 25  FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
           +P   ++  G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 7   YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66

Query: 85  KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
           KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 67  KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125

Query: 145 RNTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL 192
            +TVPSVSSI+RI+R+K  +   +                +          + +SI GIL
Sbjct: 126 NDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185

Query: 193 -----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERT 241
                S   +  + DEG   S + +   LP     RKQ R    FT +QLE L+R FER 
Sbjct: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQ 244

Query: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
           HY DI+T  E  +  + TE       +      +    +         +PG   P + P 
Sbjct: 245 HYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPI 301

Query: 302 LPTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
           +    L+ T+    P  +P A     S        P  T     +P +  S S Y  P  
Sbjct: 302 VTGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ- 350

Query: 360 RHGFSSYTDSFVPPS 374
              +SSY DS+  P+
Sbjct: 351 ---YSSYNDSWRFPN 362


>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
          Length = 396

 Score =  220 bits (561), Expect = 2e-57
 Identities = 156/393 (39%), Positives = 208/393 (52%), Gaps = 66/393 (16%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSI+PG IGGSKPK V TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76  GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134

Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
           I+RI+R+K  +      D                       +  ++    +SI+GIL   
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194

Query: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
           R++  +     D+        DS+  +   RK  R+  TFT +QLE L+R FER  YPD+
Sbjct: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253

Query: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFN 287
           +   E  +  +  E  +           S+  A    + G+N            + MA  
Sbjct: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMAST 313

Query: 288 HL--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVH 340
            L   P   PPT   + PT  L+        +P+A   PSS++      +   +PP    
Sbjct: 314 TLPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV-- 365

Query: 341 QSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 373
           Q T  S+P + +A   PSTR   +   DS  PP
Sbjct: 366 QPTGASSPATRTA--TPSTR-PTTRLGDSATPP 395


>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
          Length = 408

 Score =  219 bits (559), Expect = 4e-57
 Identities = 150/383 (39%), Positives = 197/383 (51%), Gaps = 51/383 (13%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSI+PG IGGSKPK V TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76  GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134

Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
           I+RI+R+K  +      D                       +  ++    +SI+GIL   
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194

Query: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
           R++  +     D+        DS+  +   RK  R+  TFT +QLE L+R FER  YPD+
Sbjct: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253

Query: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGANQLMAFNHLIPGGFPPTAM 299
           +   E  +  +  E  +           S+  A    + G+N      + +  G    A 
Sbjct: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTG-RDMAS 312

Query: 300 PTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
            TLP Y        P  +P     P+     P       V  S    NP S   Y   + 
Sbjct: 313 TTLPGY--------PPHVP-----PTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNE 359

Query: 360 RHGFSSYTDSFVPPSGPSNPMNP 382
              FS+     +PP GP  P+ P
Sbjct: 360 AWRFSN-PALLMPPPGPPLPLLP 381


>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
          Length = 393

 Score =  216 bits (550), Expect = 4e-56
 Identities = 121/245 (49%), Positives = 154/245 (62%), Gaps = 29/245 (11%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSI+PG IGGSKPK V TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76  GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134

Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
           I+RI+R+K  +      D                       +  ++    +SI+GIL   
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194

Query: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
           R++  +     D+        DS+  +   RK  R+  TFT +QLE L+R FER  YPD+
Sbjct: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253

Query: 247 YTREE 251
           +   E
Sbjct: 254 FQASE 258


>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
          Length = 431

 Score =  210 bits (535), Expect = 2e-54
 Identities = 152/412 (36%), Positives = 194/412 (47%), Gaps = 86/412 (20%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSI+PG IGGSKPK V TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76  GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134

Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-- 193
           I+RI+R+K  +      D                       +  ++    +SI+GIL   
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194

Query: 194 ------------------------------------ERASAPQSDEGSDIDSEPDLPLKR 217
                                                  S P  D  S +DS       R
Sbjct: 195 RSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LR 248

Query: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWF-------SNR 270
           K  R+  TFT +QLE L+R FER  YPD++   E  +  +  E  +           S+ 
Sbjct: 249 KHLRA-DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSL 307

Query: 271 RARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHR 330
            A    + G+N      + +  G    A  TLP Y        P  +P     P+     
Sbjct: 308 SASTNPELGSNVSGTQTYPVVTG-RDMASTTLPGY--------PPHVP-----PTGQGSY 353

Query: 331 PQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNP 382
           P       V  S    NP S   Y   +    FS+     +PP GP  P+ P
Sbjct: 354 PTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN-PALLMPPPGPPLPLLP 404


>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
          Length = 450

 Score =  209 bits (532), Expect = 5e-54
 Identities = 154/430 (35%), Positives = 208/430 (48%), Gaps = 76/430 (17%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69  GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127

Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
           I+RI+R+K                    G      + +   E+ +S+   + +SI+G+L 
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187

Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
                S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246

Query: 245 DIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGG---FPPTAMP- 300
           + Y                        +  + + G   L   N  +  G     P+  P 
Sbjct: 247 EAYASP---------------------SHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPL 285

Query: 301 -----TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST------VHQSTIPSN-- 347
                T  TY +    + P +I Q   + SS+   P  L  S       V     P N  
Sbjct: 286 GRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAF 345

Query: 348 PDSSSAY------CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
           P ++S Y       L S R         + PP  P++       + ++  V G   +   
Sbjct: 346 PHAASVYGQFTGQALLSGREMVGPTLPGY-PPHIPTSGQGSYASSAIAGMVAGSEYSGNA 404

Query: 402 VPHQPQTDYA 411
             H P + Y+
Sbjct: 405 YGHTPYSSYS 414


>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
          Length = 321

 Score =  207 bits (528), Expect = 1e-53
 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69  GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127

Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
           I+RI+R+K                    G      + +   E+ +S+   + +SI+G+L 
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187

Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
                S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246

Query: 245 DIY 247
           + Y
Sbjct: 247 EAY 249


>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
          Length = 287

 Score =  207 bits (528), Expect = 1e-53
 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69  GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127

Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
           I+RI+R+K                    G      + +   E+ +S+   + +SI+G+L 
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187

Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
                S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246

Query: 245 DIY 247
           + Y
Sbjct: 247 EAY 249


>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
          Length = 398

 Score =  207 bits (528), Expect = 1e-53
 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69  GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127

Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
           I+RI+R+K                    G      + +   E+ +S+   + +SI+G+L 
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187

Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
                S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246

Query: 245 DIY 247
           + Y
Sbjct: 247 EAY 249


>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
          Length = 387

 Score =  207 bits (528), Expect = 1e-53
 Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69  GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127

Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
           I+RI+R+K                    G      + +   E+ +S+   + +SI+G+L 
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187

Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
                S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246

Query: 245 DIY 247
           + Y
Sbjct: 247 EAY 249


>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
          Length = 416

 Score =  207 bits (526), Expect = 2e-53
 Identities = 123/274 (44%), Positives = 151/274 (55%), Gaps = 64/274 (23%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
           GSI+PG IGGSKPK V TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76  GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134

Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-- 193
           I+RI+R+K  +      D                       +  ++    +SI+GIL   
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194

Query: 194 ------------------------------------ERASAPQSDEGSDIDSEPDLPLKR 217
                                                  S P  D  S +DS       R
Sbjct: 195 RSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LR 248

Query: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREE 251
           K  R+  TFT +QLE L+R FER  YPD++   E
Sbjct: 249 KHLRA-DTFTQQQLEALDRVFERPSYPDVFQASE 281


>gi|197276661 paired box 1 [Homo sapiens]
          Length = 534

 Score =  198 bits (504), Expect = 8e-51
 Identities = 114/214 (53%), Positives = 141/214 (65%), Gaps = 10/214 (4%)

Query: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183

Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
           YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G    +    E  +   S
Sbjct: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPS 242

Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 214
           +    +  + I      +P S  G+ + S P +P
Sbjct: 243 QPTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274


>gi|7242167 paired box 9 [Homo sapiens]
          Length = 341

 Score =  192 bits (487), Expect = 8e-49
 Identities = 96/128 (75%), Positives = 107/128 (83%), Gaps = 1/128 (0%)

Query: 36  GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 95
           G VNQLGGVF+NGRPLPN IR +IVE+A  GIRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 6   GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 65

Query: 96  IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 155
           I PGAIGGSKP+ VTTP V K I  YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSIS
Sbjct: 66  ILPGAIGGSKPR-VTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 124

Query: 156 RILRSKFG 163
           RILR+K G
Sbjct: 125 RILRNKIG 132


>gi|170784824 paired box 4 [Homo sapiens]
          Length = 343

 Score =  183 bits (464), Expect = 4e-46
 Identities = 124/341 (36%), Positives = 174/341 (51%), Gaps = 48/341 (14%)

Query: 38  VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
           +NQLGG+F+NGRPLP   R +IV +A  G+RPC ISR L+VS+GCVSKIL RY  TG + 
Sbjct: 1   MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60

Query: 98  PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
           P  IGGSKP+ + TP V  +I + K E P +F+WEI+ +L  + +C ++  PSVSSI+R+
Sbjct: 61  PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119

Query: 158 LRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217
           LR+               + ++     +     +L+     P S   +   + P      
Sbjct: 120 LRA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG----- 160

Query: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
              R+RT F+  Q E LE+ F+R  YPD   R +LA    L E  V+VWFSNRRA+WR+Q
Sbjct: 161 TGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQ 220

Query: 278 ---------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTS 316
                     GA+Q +    +          PG  P  A+P L    L  + YQ    T+
Sbjct: 221 EKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATA 278

Query: 317 IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLP 357
             + +SD          L P   H    P++ D S   CLP
Sbjct: 279 PERCLSDTPPKA----CLKPCWGHLPPQPNSLD-SGLLCLP 314


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score =  111 bits (278), Expect = 1e-24
 Identities = 59/92 (64%), Positives = 67/92 (72%), Gaps = 11/92 (11%)

Query: 199 PQSDEGSD----------IDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYT 248
           P+  EG D           DSE  L LKRKQRR RTTFT+ QLEELERAF++THYPD++T
Sbjct: 299 PEDAEGKDGEDSVCLSAGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFT 357

Query: 249 REELAQRAKLTEARVQVWFSNRRARWRKQAGA 280
           REELA R  LTEARVQVWF NRRA+WRK+  A
Sbjct: 358 REELAMRLDLTEARVQVWFQNRRAKWRKREKA 389


>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score =  104 bits (259), Expect = 2e-22
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)

Query: 167 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 224
           EE  D+   +A+E+  +A  S+     L+  +  PQ D    ++SE     KRKQRR+RT
Sbjct: 43  EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99

Query: 225 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 281
           TF + QL+ LER FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN
Sbjct: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159

Query: 282 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 341
           +  +      G       P +P      T Y        +S  +++ +R   LP   +H+
Sbjct: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,216,487
Number of Sequences: 37866
Number of extensions: 1243782
Number of successful extensions: 6365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 391
Number of HSP's that attempted gapping in prelim test: 5231
Number of HSP's gapped (non-prelim): 1427
length of query: 505
length of database: 18,247,518
effective HSP length: 107
effective length of query: 398
effective length of database: 14,195,856
effective search space: 5649950688
effective search space used: 5649950688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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