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Search of human proteins with 31563344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
(505 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 1035 0.0
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 993 0.0
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 986 0.0
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 971 0.0
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 800 0.0
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 800 0.0
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 745 0.0
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 745 0.0
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 740 0.0
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] 399 e-111
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] 397 e-111
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 255 8e-68
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 255 8e-68
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 245 6e-65
gi|9951920 paired box 5 [Homo sapiens] 227 2e-59
gi|34878709 paired box protein 2 isoform c [Homo sapiens] 220 2e-57
gi|34878716 paired box protein 2 isoform d [Homo sapiens] 219 4e-57
gi|34878701 paired box protein 2 isoform b [Homo sapiens] 216 4e-56
gi|34878703 paired box protein 2 isoform e [Homo sapiens] 210 2e-54
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] 209 5e-54
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] 207 1e-53
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] 207 1e-53
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 207 1e-53
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 207 1e-53
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 207 2e-53
gi|197276661 paired box 1 [Homo sapiens] 198 8e-51
gi|7242167 paired box 9 [Homo sapiens] 192 8e-49
gi|170784824 paired box 4 [Homo sapiens] 183 4e-46
gi|24497589 aristaless related homeobox [Homo sapiens] 111 1e-24
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 104 2e-22
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 1035 bits (2677), Expect = 0.0
Identities = 505/505 (100%), Positives = 505/505 (100%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
Query: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480
PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480
Query: 481 PDIAWFQILLNTFDKSSGEEEDLEQ 505
PDIAWFQILLNTFDKSSGEEEDLEQ
Sbjct: 481 PDIAWFQILLNTFDKSSGEEEDLEQ 505
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 993 bits (2566), Expect = 0.0
Identities = 484/484 (100%), Positives = 484/484 (100%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
Query: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480
PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480
Query: 481 PDIA 484
PDIA
Sbjct: 481 PDIA 484
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 986 bits (2549), Expect = 0.0
Identities = 483/484 (99%), Positives = 483/484 (99%), Gaps = 1/484 (0%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179
Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 180 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 239
Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 240 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 299
Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 300 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 360 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 419
Query: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480
PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK
Sbjct: 420 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 479
Query: 481 PDIA 484
PDIA
Sbjct: 480 PDIA 483
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 971 bits (2511), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420
Query: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 800 bits (2065), Expect = 0.0
Identities = 392/398 (98%), Positives = 396/398 (99%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTN 398
HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQV ++++
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVPFIISS 398
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 800 bits (2065), Expect = 0.0
Identities = 392/398 (98%), Positives = 396/398 (99%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240
Query: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300
Query: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360
Query: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTN 398
HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQV ++++
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVPFIISS 398
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 745 bits (1923), Expect = 0.0
Identities = 372/478 (77%), Positives = 410/478 (85%), Gaps = 16/478 (3%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
M L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+QV TPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEE-EADLERKEAEE 179
YKRENPGMFSWEIRD+LLKD CDR+TVPSVSSISR+LR KFGK EEE EAD K+ ++
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRVLRIKFGKKEEEDEAD---KKEDD 177
Query: 180 SEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFE 239
EKKAKHSIDGIL ++ + + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+AFE
Sbjct: 178 GEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFE 235
Query: 240 RTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAM 299
RTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT M
Sbjct: 236 RTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGM 295
Query: 300 PTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAYCL 356
PTLP YQL +++Y T+I Q D STVHRPQPLPPST+HQ + + D+SSAY
Sbjct: 296 PTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY-- 350
Query: 357 PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLT 416
RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N VP QPQ D+++SPL
Sbjct: 351 -GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISPLH 408
Query: 417 GGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
GGL+ T++SASCSQR D +K DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQS
Sbjct: 409 GGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQS 466
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 745 bits (1923), Expect = 0.0
Identities = 374/490 (76%), Positives = 416/490 (84%), Gaps = 18/490 (3%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
M L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+QV TPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPS--VSSISRILRSKFGKGEEE-EADLERKEA 177
YKRENPGMFSWEIRD+LLKD CDR+TVPS VSSISR+LR KFGK EEE EAD K+
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEEEDEAD---KKE 177
Query: 178 EESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 237
++ EKKAKHSIDGIL ++ + + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+A
Sbjct: 178 DDGEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKA 235
Query: 238 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPT 297
FERTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT
Sbjct: 236 FERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPT 295
Query: 298 AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAY 354
MPTLP YQL +++Y T+I Q D STVHRPQPLPPST+HQ + + D+SSAY
Sbjct: 296 GMPTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY 352
Query: 355 CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSP 414
RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N VP QPQ D+++SP
Sbjct: 353 ---GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISP 408
Query: 415 LTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
L GGL+ T++SASCSQR D +K DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQ+
Sbjct: 409 LHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQT 468
Query: 475 AFHYLKPDIA 484
A YL +++
Sbjct: 469 AVDYLAKNVS 478
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 740 bits (1910), Expect = 0.0
Identities = 372/480 (77%), Positives = 410/480 (85%), Gaps = 18/480 (3%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
M L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+QV TPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPS--VSSISRILRSKFGKGEEE-EADLERKEA 177
YKRENPGMFSWEIRD+LLKD CDR+TVPS VSSISR+LR KFGK EEE EAD K+
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEEEDEAD---KKE 177
Query: 178 EESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 237
++ EKKAKHSIDGIL ++ + + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+A
Sbjct: 178 DDGEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKA 235
Query: 238 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPT 297
FERTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT
Sbjct: 236 FERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPT 295
Query: 298 AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAY 354
MPTLP YQL +++Y T+I Q D STVHRPQPLPPST+HQ + + D+SSAY
Sbjct: 296 GMPTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY 352
Query: 355 CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSP 414
RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N VP QPQ D+++SP
Sbjct: 353 ---GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISP 408
Query: 415 LTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474
L GGL+ T++SASCSQR D +K DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQS
Sbjct: 409 LHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQS 468
>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
Length = 206
Score = 399 bits (1025), Expect = e-111
Identities = 196/198 (98%), Positives = 196/198 (98%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
Query: 181 EKKAKHSIDGILSERASA 198
EKKAKHSIDGILSER A
Sbjct: 181 EKKAKHSIDGILSERGKA 198
>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
Length = 215
Score = 397 bits (1021), Expect = e-111
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1 MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE
Sbjct: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
Query: 181 EKKAKHSIDGILSER 195
EKKAKHSIDGILSER
Sbjct: 181 EKKAKHSIDGILSER 195
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 255 bits (651), Expect = 8e-68
Identities = 166/410 (40%), Positives = 227/410 (55%), Gaps = 53/410 (12%)
Query: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
Query: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
Query: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
LR+ + ++ AD L + + + S+ G ++ Q
Sbjct: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186
Query: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246
Query: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
L EAR+QVWFSNRRA+WR++ N P+ +P ++ S + YQP
Sbjct: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298
Query: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
IPQ + SS + P PS + +P P SS +
Sbjct: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357
Query: 356 LPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 405
LP++ D++ PP ++ + +G + GL++ VP Q
Sbjct: 358 LPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 255 bits (651), Expect = 8e-68
Identities = 166/410 (40%), Positives = 227/410 (55%), Gaps = 53/410 (12%)
Query: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
Query: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
P AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC + +PSVSSI+R+
Sbjct: 68 PRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV 126
Query: 158 LRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------ 200
LR+ + ++ AD L + + + S+ G ++ Q
Sbjct: 127 LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGEN 186
Query: 201 ----SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQR 255
S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA +
Sbjct: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246
Query: 256 AKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPT 315
L EAR+QVWFSNRRA+WR++ N P+ +P ++ S + YQP
Sbjct: 247 IDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP- 298
Query: 316 SIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYC 355
IPQ + SS + P PS + +P P SS +
Sbjct: 299 -IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCM 357
Query: 356 LPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 405
LP++ D++ PP ++ + +G + GL++ VP Q
Sbjct: 358 LPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 245 bits (626), Expect = 6e-65
Identities = 166/424 (39%), Positives = 227/424 (53%), Gaps = 67/424 (15%)
Query: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
VNQLGGVF+NGRPLP+ R KIVE+AH G RPC ISR L+ VS+GCV
Sbjct: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
Query: 84 SKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVC 143
SKIL RY ETGSIRP AIGGSKP+ V TP+V KI +YKRE P +F+WEIRD+LL + VC
Sbjct: 68 SKILGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVC 126
Query: 144 DRNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGIL 192
+ +PSVSSI+R+LR+ + ++ AD L + + + S+ G
Sbjct: 127 TNDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQP 186
Query: 193 SERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 241
++ Q S G D D ++ L LKRK +R+RT+FT EQ+E LE+ FERT
Sbjct: 187 TQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERT 246
Query: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
HYPD++ RE LA + L EAR+QVWFSNRRA+WR++ N P+ +P
Sbjct: 247 HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPI 301
Query: 302 LPTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPS 346
++ S + YQP IPQ + SS + P PS + +P
Sbjct: 302 SSSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPM 357
Query: 347 NP-----DSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
P SS + LP++ D++ PP ++ + +G + GL++
Sbjct: 358 QPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVS 416
Query: 402 VPHQ 405
VP Q
Sbjct: 417 VPVQ 420
>gi|9951920 paired box 5 [Homo sapiens]
Length = 391
Score = 227 bits (578), Expect = 2e-59
Identities = 152/375 (40%), Positives = 199/375 (53%), Gaps = 44/375 (11%)
Query: 25 FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
+P ++ G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 7 YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66
Query: 85 KILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 144
KIL RY ETGSI+PG IGGSKPK V TP V +KI EYKR+NP MF+WEIRD+LL + VCD
Sbjct: 67 KILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCD 125
Query: 145 RNTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL 192
+TVPSVSSI+RI+R+K + + + + +SI GIL
Sbjct: 126 NDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGIL 185
Query: 193 -----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERT 241
S + + DEG S + + LP RKQ R FT +QLE L+R FER
Sbjct: 186 GITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQ 244
Query: 242 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 301
HY DI+T E + + TE + + + +PG P + P
Sbjct: 245 HYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPI 301
Query: 302 LPTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
+ L+ T+ P +P A S P T +P + S S Y P
Sbjct: 302 VTGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ- 350
Query: 360 RHGFSSYTDSFVPPS 374
+SSY DS+ P+
Sbjct: 351 ---YSSYNDSWRFPN 362
>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
Length = 396
Score = 220 bits (561), Expect = 2e-57
Identities = 156/393 (39%), Positives = 208/393 (52%), Gaps = 66/393 (16%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
Query: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
R++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD+
Sbjct: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
Query: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFN 287
+ E + + E + S+ A + G+N + MA
Sbjct: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMAST 313
Query: 288 HL--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVH 340
L P PPT + PT L+ +P+A PSS++ + +PP
Sbjct: 314 TLPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV-- 365
Query: 341 QSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 373
Q T S+P + +A PSTR + DS PP
Sbjct: 366 QPTGASSPATRTA--TPSTR-PTTRLGDSATPP 395
>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
Length = 408
Score = 219 bits (559), Expect = 4e-57
Identities = 150/383 (39%), Positives = 197/383 (51%), Gaps = 51/383 (13%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
Query: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
R++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD+
Sbjct: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
Query: 247 YTREELAQRAKLTEARVQVWF-------SNRRARWRKQAGANQLMAFNHLIPGGFPPTAM 299
+ E + + E + S+ A + G+N + + G A
Sbjct: 254 FQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTG-RDMAS 312
Query: 300 PTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPST 359
TLP Y P +P P+ P V S NP S Y +
Sbjct: 313 TTLPGY--------PPHVP-----PTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNE 359
Query: 360 RHGFSSYTDSFVPPSGPSNPMNP 382
FS+ +PP GP P+ P
Sbjct: 360 AWRFSN-PALLMPPPGPPLPLLP 381
>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
Length = 393
Score = 216 bits (550), Expect = 4e-56
Identities = 121/245 (49%), Positives = 154/245 (62%), Gaps = 29/245 (11%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-E 194
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
Query: 195 RASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDI 246
R++ + D+ DS+ + RK R+ TFT +QLE L+R FER YPD+
Sbjct: 195 RSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDV 253
Query: 247 YTREE 251
+ E
Sbjct: 254 FQASE 258
>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
Length = 431
Score = 210 bits (535), Expect = 2e-54
Identities = 152/412 (36%), Positives = 194/412 (47%), Gaps = 86/412 (20%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-- 193
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
Query: 194 ------------------------------------ERASAPQSDEGSDIDSEPDLPLKR 217
S P D S +DS R
Sbjct: 195 RSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LR 248
Query: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWF-------SNR 270
K R+ TFT +QLE L+R FER YPD++ E + + E + S+
Sbjct: 249 KHLRA-DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSL 307
Query: 271 RARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHR 330
A + G+N + + G A TLP Y P +P P+
Sbjct: 308 SASTNPELGSNVSGTQTYPVVTG-RDMASTTLPGY--------PPHVP-----PTGQGSY 353
Query: 331 PQPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNP 382
P V S NP S Y + FS+ +PP GP P+ P
Sbjct: 354 PTSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN-PALLMPPPGPPLPLLP 404
>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
Length = 450
Score = 209 bits (532), Expect = 5e-54
Identities = 154/430 (35%), Positives = 208/430 (48%), Gaps = 76/430 (17%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
Query: 245 DIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGG---FPPTAMP- 300
+ Y + + + G L N + G P+ P
Sbjct: 247 EAYASP---------------------SHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPL 285
Query: 301 -----TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST------VHQSTIPSN-- 347
T TY + + P +I Q + SS+ P L S V P N
Sbjct: 286 GRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAF 345
Query: 348 PDSSSAY------CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGG 401
P ++S Y L S R + PP P++ + ++ V G +
Sbjct: 346 PHAASVYGQFTGQALLSGREMVGPTLPGY-PPHIPTSGQGSYASSAIAGMVAGSEYSGNA 404
Query: 402 VPHQPQTDYA 411
H P + Y+
Sbjct: 405 YGHTPYSSYS 414
>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
Length = 321
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
Query: 245 DIY 247
+ Y
Sbjct: 247 EAY 249
>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
Length = 287
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
Query: 245 DIY 247
+ Y
Sbjct: 247 EAY 249
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
Query: 245 DIY 247
+ Y
Sbjct: 247 EAY 249
>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
Length = 387
Score = 207 bits (528), Expect = 1e-53
Identities = 120/243 (49%), Positives = 153/243 (62%), Gaps = 31/243 (12%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G +NQLGG F+NGRPLP +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSIRPG IGGSKPK V TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSS
Sbjct: 69 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
Query: 154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192
I+RI+R+K G + + E+ +S+ + +SI+G+L
Sbjct: 128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
Query: 193 -----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYP 244
S++ SD+ S IDS+ RK R+ F+ LE LE FER HYP
Sbjct: 188 IAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYP 246
Query: 245 DIY 247
+ Y
Sbjct: 247 EAY 249
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 207 bits (526), Expect = 2e-53
Identities = 123/274 (44%), Positives = 151/274 (55%), Gaps = 64/274 (23%)
Query: 34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16 GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75
Query: 94 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153
GSI+PG IGGSKPK V TP V KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSS
Sbjct: 76 GSIKPGVIGGSKPK-VATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSS 134
Query: 154 ISRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-- 193
I+RI+R+K + D + ++ +SI+GIL
Sbjct: 135 INRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIP 194
Query: 194 ------------------------------------ERASAPQSDEGSDIDSEPDLPLKR 217
S P D S +DS R
Sbjct: 195 RSNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LR 248
Query: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREE 251
K R+ TFT +QLE L+R FER YPD++ E
Sbjct: 249 KHLRA-DTFTQQQLEALDRVFERPSYPDVFQASE 281
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 198 bits (504), Expect = 8e-51
Identities = 114/214 (53%), Positives = 141/214 (65%), Gaps = 10/214 (4%)
Query: 5 AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60
A A+P P PG +P +++ PL G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 67 AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124
Query: 61 EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120
E+A GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+ VTTP+V K I +
Sbjct: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPR-VTTPNVVKHIRD 183
Query: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180
YK+ +PG+F+WEIRD+LL D VCD+ VPSVSSISRILR+K G + E + S
Sbjct: 184 YKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPS 242
Query: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 214
+ + + I +P S G+ + S P +P
Sbjct: 243 QPTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274
>gi|7242167 paired box 9 [Homo sapiens]
Length = 341
Score = 192 bits (487), Expect = 8e-49
Identities = 96/128 (75%), Positives = 107/128 (83%), Gaps = 1/128 (0%)
Query: 36 GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 95
G VNQLGGVF+NGRPLPN IR +IVE+A GIRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 6 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 65
Query: 96 IRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSIS 155
I PGAIGGSKP+ VTTP V K I YK+ +PG+F+WEIRD+LL D VCD+ VPSVSSIS
Sbjct: 66 ILPGAIGGSKPR-VTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 124
Query: 156 RILRSKFG 163
RILR+K G
Sbjct: 125 RILRNKIG 132
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 183 bits (464), Expect = 4e-46
Identities = 124/341 (36%), Positives = 174/341 (51%), Gaps = 48/341 (14%)
Query: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
Query: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
P IGGSKP+ + TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+
Sbjct: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
Query: 158 LRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217
LR+ + ++ + +L+ P S + + P
Sbjct: 120 LRA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG----- 160
Query: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
R+RT F+ Q E LE+ F+R YPD R +LA L E V+VWFSNRRA+WR+Q
Sbjct: 161 TGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQ 220
Query: 278 ---------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTS 316
GA+Q + + PG P A+P L L + YQ T+
Sbjct: 221 EKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATA 278
Query: 317 IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLP 357
+ +SD L P H P++ D S CLP
Sbjct: 279 PERCLSDTPPKA----CLKPCWGHLPPQPNSLD-SGLLCLP 314
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 111 bits (278), Expect = 1e-24
Identities = 59/92 (64%), Positives = 67/92 (72%), Gaps = 11/92 (11%)
Query: 199 PQSDEGSD----------IDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYT 248
P+ EG D DSE L LKRKQRR RTTFT+ QLEELERAF++THYPD++T
Sbjct: 299 PEDAEGKDGEDSVCLSAGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFT 357
Query: 249 REELAQRAKLTEARVQVWFSNRRARWRKQAGA 280
REELA R LTEARVQVWF NRRA+WRK+ A
Sbjct: 358 REELAMRLDLTEARVQVWFQNRRAKWRKREKA 389
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 104 bits (259), Expect = 2e-22
Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)
Query: 167 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 224
EE D+ +A+E+ +A S+ L+ + PQ D ++SE KRKQRR+RT
Sbjct: 43 EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99
Query: 225 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 281
TF + QL+ LER FERTHYPD + RE+LA+R LTEARVQVWF NRRA++R+ AN
Sbjct: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159
Query: 282 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 341
+ + G P +P T Y +S +++ +R LP +H+
Sbjct: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,216,487
Number of Sequences: 37866
Number of extensions: 1243782
Number of successful extensions: 6365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 391
Number of HSP's that attempted gapping in prelim test: 5231
Number of HSP's gapped (non-prelim): 1427
length of query: 505
length of database: 18,247,518
effective HSP length: 107
effective length of query: 398
effective length of database: 14,195,856
effective search space: 5649950688
effective search space used: 5649950688
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.