Guide to the Human Genome
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Name: GADD45GIP1 Sequence: fasta or formatted (222aa) NCBI GI: 31543415
Description:

growth arrest and DNA-damage-inducible, gamma interacting protein 1

Referenced in:

p53 Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         34           3
 C cysteine            0.5          1           1
 D aspartate           2.7          6           1
 E glutamate          10.8         24           2
 F phenylalanine       0.9          2           1
 G glycine             4.5         10           1
 H histidine           0.5          1           1
 I isoleucine          0.9          2           1
 K lysine              6.3         14           2
 L leucine             9.0         20           2
 M methionine          2.3          5           1
 N asparagine          0.9          2           1
 P proline             8.1         18           3
 Q glutamine           9.5         21           4
 R arginine           12.6         28           3
 S serine              5.4         12           2
 T threonine           1.4          3           1
 V valine              3.6          8           2
 W tryptophan          2.7          6           1
 Y tyrosine            2.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth arrest and DNA-damage-inducible, gamma intera... 
MAP4K4                0.064   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.064   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.064   mitogen-activated protein kinase kinase kinase kinas...
LOC283685             0.064   PREDICTED: golgi autoantigen, golgin subfamily a-li...
INCENP                0.060   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.060   inner centromere protein antigens 135/155kDa isofor...
LOC283685             0.057   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MAP7D1                0.055   MAP7 domain containing 1 
LOC645202             0.053   PREDICTED: hypothetical protein LOC645202 
BAT2D1                0.053   HBxAg transactivated protein 2 
TCHH                  0.053   trichohyalin 
GIGYF2                0.050   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.050   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.050   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.050   GRB10 interacting GYF protein 2 isoform b 
SAFB2                 0.050   scaffold attachment factor B2 
MAP7                  0.050   microtubule-associated protein 7 
LOC651807             0.050   PREDICTED: hypothetical protein 
MAP1B                 0.048   microtubule-associated protein 1B 
LOC283767             0.045   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.045   PREDICTED: Putative golgin subfamily A member 6-lik...
TNIK                  0.045   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.045   TRAF2 and NCK interacting kinase isoform 7 
TNIK                  0.045   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.045   TRAF2 and NCK interacting kinase isoform 3 
CALD1                 0.045   caldesmon 1 isoform 1 
LOC100133758          0.045   PREDICTED: hypothetical protein, partial 
LOC400352             0.043   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.043   PREDICTED: similar to Putative golgin subfamily A m...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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