Guide to the Human Genome
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Name: LOC728400 Sequence: fasta or formatted (530aa) NCBI GI: 113415486
Description:

PREDICTED: similar to deubiquitinating enzyme 1

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         42           2
 C cysteine            3.2         17           1
 D aspartate           4.5         24           2
 E glutamate           5.8         31           2
 F phenylalanine       2.5         13           1
 G glycine             5.1         27           2
 H histidine           5.5         29           2
 I isoleucine          2.6         14           1
 K lysine              5.8         31           2
 L leucine            10.4         55           2
 M methionine          2.3         12           1
 N asparagine          3.4         18           1
 P proline             5.1         27           2
 Q glutamine           7.0         37           2
 R arginine            5.5         29           2
 S serine              7.9         42           3
 T threonine           5.7         30           2
 V valine              5.5         29           1
 W tryptophan          1.1          6           1
 Y tyrosine            3.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to deubiquitinating enzyme 1 [Ho... 
LOC728419             1.000   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             1.000   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             1.000   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728379             1.000   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728373             1.000   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728369             1.000   PREDICTED: similar to deubiquitinating enzyme 3 [Ho...
USP17L5               0.998   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
LOC100287441          0.996   PREDICTED: hypothetical protein XP_002342478 
LOC100287327          0.993   PREDICTED: hypothetical protein XP_002342475 
LOC100287178          0.993   PREDICTED: hypothetical protein XP_002342472 
LOC728373             0.992   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287513          0.992   PREDICTED: hypothetical protein XP_002342480 
LOC100287364          0.992   PREDICTED: hypothetical protein XP_002342476 
LOC100287404          0.990   PREDICTED: hypothetical protein XP_002342477 
LOC100287478          0.989   PREDICTED: hypothetical protein XP_002342479 
USP17                 0.987   ubiquitin specific peptidase 17 
LOC728379             0.986   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287205          0.985   PREDICTED: hypothetical protein XP_002342473 
LOC100288520          0.985   PREDICTED: hypothetical protein XP_002342486 
LOC100287238          0.978   PREDICTED: hypothetical protein XP_002342474 
LOC100287144          0.962   PREDICTED: hypothetical protein XP_002342471 
DUB3                  0.940   deubiquitinating enzyme 3 
USP17L3               0.931   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
USP17L8               0.931   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L4               0.924   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L7               0.906   PREDICTED: Inactive ubiquitin carboxyl-terminal hydr...
USP17L7               0.902   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L7               0.902   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L8               0.667   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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