Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 30578416
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30578416 ring finger protein 113B [Homo sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30578416 ring finger protein 113B [Homo sapiens] 687 0.0
gi|5902158 ring finger protein 113A [Homo sapiens] 481 e-136
gi|88999601 tripartite motif-containing 69 isoform a [Homo sapiens] 42 6e-04
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 42 0.001
gi|109134327 PTD016 protein [Homo sapiens] 41 0.001
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 41 0.002
gi|30023818 tripartite motif protein 50A [Homo sapiens] 40 0.002
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 40 0.002
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 40 0.003
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens] 40 0.003
gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens] 40 0.003
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 40 0.004
gi|33300663 polycomb group ring finger 5 [Homo sapiens] 38 0.011
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 38 0.014
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 38 0.014
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 38 0.014
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 38 0.014
gi|60099474 tripartite motif-containing 61 [Homo sapiens] 37 0.018
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ... 37 0.024
gi|31542779 tripartite motif family-like 1 [Homo sapiens] 37 0.024
gi|239755490 PREDICTED: similar to tripartite motif-containing 5... 37 0.031
gi|239755486 PREDICTED: tripartite motif-containing protein 64C-... 37 0.031
gi|239755484 PREDICTED: tripartite motif-containing protein 64C-... 37 0.031
gi|239750044 PREDICTED: tripartite motif-containing protein 64C-... 37 0.031
gi|239750042 PREDICTED: tripartite motif-containing protein 64C-... 37 0.031
gi|239750040 PREDICTED: similar to tripartite motif-containing 5... 37 0.031
gi|239744355 PREDICTED: tripartite motif-containing protein 64C-... 37 0.031
gi|239744353 PREDICTED: tripartite motif-containing protein 64C-... 37 0.031
gi|8923898 zinc finger protein 313 [Homo sapiens] 37 0.031
gi|157426898 tripartite motif-containing 10 isoform 1 [Homo sapi... 37 0.031
>gi|30578416 ring finger protein 113B [Homo sapiens]
Length = 322
Score = 687 bits (1772), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP 60
MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP
Sbjct: 1 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP 60
Query: 61 RVAPRPRGLHSWQKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEK 120
RVAPRPRGLHSWQKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEK
Sbjct: 61 RVAPRPRGLHSWQKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMGATADFEQDTEK 120
Query: 121 EHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAP 180
EHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAP
Sbjct: 121 EHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGMARKGPIRAP 180
Query: 181 GHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEGRYCICED 240
GHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEGRYCICED
Sbjct: 181 GHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELEEGRYCICED 240
Query: 241 ENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGI 300
ENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGI
Sbjct: 241 ENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGI 300
Query: 301 FNPAKELMAKLQKLQAAEGKKR 322
FNPAKELMAKLQKLQAAEGKKR
Sbjct: 301 FNPAKELMAKLQKLQAAEGKKR 322
>gi|5902158 ring finger protein 113A [Homo sapiens]
Length = 343
Score = 481 bits (1238), Expect = e-136
Identities = 236/325 (72%), Positives = 265/325 (81%), Gaps = 12/325 (3%)
Query: 1 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP 60
MA SPG+ DQ VCTFLFKKPGRKGAAG RKRPACDPE GES SS DEG TV +P
Sbjct: 1 MAEQLSPGKAVDQ---VCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPE 57
Query: 61 --RVAPRPRGLHSW----QKAAHGDRRGEEAA---PESLDVVYRSTRSAKPVGPEDMGAT 111
RV P + QKAA+GD EE PESL VVY+STRSAKPVGPEDMGAT
Sbjct: 58 KKRVTHNPMIQKTRDSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGAT 117
Query: 112 ADFEQDTEKEHHTPTILKCSQRVQEALRGREHDHIYRGIHSYLRYLKPKDTSMGNSSSGM 171
A +E DTEKE I + SQ++QE LRG+E D IYRGI++Y +Y+KPKDTSMGN+SSGM
Sbjct: 118 AVYELDTEKERDAQAIFERSQKIQEELRGKEDDKIYRGINNYQKYMKPKDTSMGNASSGM 177
Query: 172 ARKGPIRAPGHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKLGWEIERELE 231
RKGPIRAP HLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYK GW+IEREL+
Sbjct: 178 VRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELD 237
Query: 232 EGRYCICEDENHEVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCY 291
EGRY + EDEN+EVGS++EEIPF+CFICRQ+FQNPVVTKCRHYFCESCAL+HFR TPRCY
Sbjct: 238 EGRYGVYEDENYEVGSDDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFRTTPRCY 297
Query: 292 ICDQPTGGIFNPAKELMAKLQKLQA 316
+CDQ T G+FNPAKEL+AKL+K +A
Sbjct: 298 VCDQQTNGVFNPAKELIAKLEKHRA 322
>gi|88999601 tripartite motif-containing 69 isoform a [Homo sapiens]
Length = 500
Score = 42.4 bits (98), Expect = 6e-04
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEHFRA------TPRCYICDQPTGGIFNPA-KELM 308
C +C F++P++ C H FCE+C + +R P C + Q FNP +L+
Sbjct: 41 CPLCNDWFRDPLMLSCGHNFCEACIQDFWRLQAKETFCPECKMLCQYNNCTFNPVLDKLV 100
Query: 309 AKLQKLQAAEG 319
K++KL +G
Sbjct: 101 EKIKKLPLLKG 111
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 210 SCKFLHDRSDYKLGWEIERELEEGRYCICEDENHEVGSEEEEIPFRCFICRQAFQNPVVT 269
S + LH S L EE E+ V +E+ + C +C F++PV+T
Sbjct: 91 SVRSLHSESSMSLRSTFSLPEEE------EEPEPLVFAEQPSVKLCCQLCCSVFKDPVIT 144
Query: 270 KCRHYFCESCALE 282
C H FC CAL+
Sbjct: 145 TCGHTFCRRCALK 157
>gi|109134327 PTD016 protein [Homo sapiens]
Length = 435
Score = 41.2 bits (95), Expect = 0.001
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 293
C IC+ FQ P++ C+H FCE C F C +C
Sbjct: 375 CSICQAEFQKPILLICQHIFCEECMTLWFNREKTCPLC 412
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 40.8 bits (94), Expect = 0.002
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQ 295
C IC + F+ PV T C H FC SC E + Y+C Q
Sbjct: 13 CSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQ 52
>gi|30023818 tripartite motif protein 50A [Homo sapiens]
Length = 487
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 244 EVGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALE---HFRATPRCYICDQPTGG 299
+V E E +C IC + F+ P++ +C H +C+ C + H A RC +C Q G
Sbjct: 4 QVSLLELEDWLQCPICLEVFKEPLMLQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDG 62
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 40.4 bits (93), Expect = 0.002
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 237 ICEDENHEV---GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCA---LEHFRATPRC 290
+C +N+ V G + E C IC+ F+ P++ C+H FCE C L+ R P C
Sbjct: 362 LCTSQNYGVRATGQQCTEAGDICAICQAEFREPLILLCQHVFCEECLCLWLDRERTCPLC 421
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 40.0 bits (92), Expect = 0.003
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 254 FRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQ 295
F C +C + F PV T C H FC++C P C +C +
Sbjct: 477 FECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPYCPLCKE 518
Score = 35.0 bits (79), Expect = 0.090
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 255 RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 293
RC CR PV C H +C C RA RC +C
Sbjct: 122 RCLGCRGFLSEPVTVPCGHSYCRRCLRRELRA--RCRLC 158
>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
Length = 350
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 230 LEEGRYCICEDENHEVGSEEEEIPF-RCFICR-QAFQNPVVTKCRHYFCESCALEHFRAT 287
LE GR EDE + + E P+ C IC+ +T+C H FC+SC + HF +
Sbjct: 108 LEGGRQD-SEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS 166
Query: 288 PRCYICD 294
RC C+
Sbjct: 167 NRCPKCN 173
>gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]
Length = 275
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 230 LEEGRYCICEDENHEVGSEEEEIPF-RCFICR-QAFQNPVVTKCRHYFCESCALEHFRAT 287
LE GR EDE + + E P+ C IC+ +T+C H FC+SC + HF +
Sbjct: 108 LEGGRQD-SEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS 166
Query: 288 PRCYICD 294
RC C+
Sbjct: 167 NRCPKCN 173
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 39.7 bits (91), Expect = 0.004
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEHF 284
C IC +Q+PV C HYFC C EH+
Sbjct: 11 CSICLSIYQDPVSLGCEHYFCRRCITEHW 39
>gi|33300663 polycomb group ring finger 5 [Homo sapiens]
Length = 256
Score = 38.1 bits (87), Expect = 0.011
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 256 CFICRQAFQNPV-VTKCRHYFCESCALEHFRATPRCYIC 293
C+IC+ P VT+C H FC++C ++HF + C C
Sbjct: 18 CYICKGYLIKPTTVTECLHTFCKTCIVQHFEDSNDCPRC 56
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 37.7 bits (86), Expect = 0.014
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 25 PGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPPRVAPRPRGL 69
PG GA GLR P D E GE ++G+EG PR P GL
Sbjct: 415 PGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGL 459
Score = 30.0 bits (66), Expect = 2.9
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 4 PPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGD 54
P PG + +Q L +PG KG AGL P GE G++G+
Sbjct: 261 PGKPGLRGEIGEQG---LAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGE 308
Score = 29.3 bits (64), Expect = 4.9
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 17/128 (13%)
Query: 1 MAAPPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPP 60
+ PP G+ + L PG G G + G S GD G VA PP
Sbjct: 459 LPGPPGKGKDGEPG------LRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPP 512
Query: 61 --------RVAPRPRGLHSW---QKAAHGDRRGEEAAPESLDVVYRSTRSAKPVGPEDMG 109
+ +P RGL + Q A D +P ++++ + + P GP +
Sbjct: 513 GPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPGLP 572
Query: 110 ATADFEQD 117
F+ D
Sbjct: 573 GLPGFKGD 580
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 37.7 bits (86), Expect = 0.014
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEHFRA---TPRCYICDQ 295
C IC + ++NP V C H FCE C + A T C +C Q
Sbjct: 23 CSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQ 65
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 37.7 bits (86), Expect = 0.014
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEHFRA---TPRCYICDQ 295
C IC + ++NP V C H FCE C + A T C +C Q
Sbjct: 50 CSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCRQ 92
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 37.7 bits (86), Expect = 0.014
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 25 PGRKGAAGLRKRPACDPEHGESSSSGDEGDTVAQPPRVAPRPRGL 69
PG GA GLR P D E GE ++G+EG PR P GL
Sbjct: 933 PGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGL 977
Score = 30.0 bits (66), Expect = 2.9
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 4 PPSPGRTADQADQVCTFLFKKPGRKGAAGLRKRPACDPEHGESSSSGDEGD 54
P PG + +Q L +PG KG AGL P GE G++G+
Sbjct: 779 PGKPGLRGEIGEQG---LAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGE 826
>gi|60099474 tripartite motif-containing 61 [Homo sapiens]
Length = 209
Score = 37.4 bits (85), Expect = 0.018
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEHFR------ATPRCYICDQPTGGIFNPAKELMA 309
C IC ++PV C H FC SC + ++ P C+ C I NP +
Sbjct: 16 CPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCCPERKFISNPQLGSLT 75
Query: 310 KLQKLQAAEGKKR 322
++ K KKR
Sbjct: 76 EIAKQLQIRSKKR 88
>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
sapiens]
Length = 1045
Score = 37.0 bits (84), Expect = 0.024
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 255 RCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFNPAK 305
+C IC F N + +C H FC C E + C +C QP IF+ +
Sbjct: 102 KCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAECPLCKQPFDSIFHSVR 153
>gi|31542779 tripartite motif family-like 1 [Homo sapiens]
Length = 468
Score = 37.0 bits (84), Expect = 0.024
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEHFR------ATPRCY 291
CFIC F +PV T+C H FC C L + + P C+
Sbjct: 16 CFICLDYFSSPVTTECGHSFCLVCLLRSWEEHNTPLSCPECW 57
>gi|239755490 PREDICTED: similar to tripartite motif-containing 53
[Homo sapiens]
Length = 283
Score = 36.6 bits (83), Expect = 0.031
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 248 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP---RCYICDQPT 297
+E ++ C IC + F +PV C H FC C +++ P RC+ C + T
Sbjct: 7 QEFQMELTCPICMKYFIDPVTVDCGHSFCRPCFYFNWQDIPIFTRCFECMKTT 59
>gi|239755486 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 447
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESC---ALEHFRATPRCYIC 293
C IC F +PV T C H FC C E RA RC +C
Sbjct: 15 CCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLC 55
>gi|239755484 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 450
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESC---ALEHFRATPRCYIC 293
C IC F +PV T C H FC C E RA RC +C
Sbjct: 15 CCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLC 55
>gi|239750044 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 447
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESC---ALEHFRATPRCYIC 293
C IC F +PV T C H FC C E RA RC +C
Sbjct: 15 CCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLC 55
>gi|239750042 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 450
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESC---ALEHFRATPRCYIC 293
C IC F +PV T C H FC C E RA RC +C
Sbjct: 15 CCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLC 55
>gi|239750040 PREDICTED: similar to tripartite motif-containing 53
[Homo sapiens]
Length = 283
Score = 36.6 bits (83), Expect = 0.031
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 248 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP---RCYICDQPT 297
+E ++ C IC + F +PV C H FC C +++ P RC+ C + T
Sbjct: 7 QEFQMELTCPICMKYFIDPVTVDCGHSFCRPCFYFNWQDIPIFTRCFECMKTT 59
>gi|239744355 PREDICTED: tripartite motif-containing protein
64C-like isoform 1 [Homo sapiens]
Length = 447
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESC---ALEHFRATPRCYIC 293
C IC F +PV T C H FC C E RA RC +C
Sbjct: 15 CCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLC 55
>gi|239744353 PREDICTED: tripartite motif-containing protein
64C-like isoform 2 [Homo sapiens]
Length = 450
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESC---ALEHFRATPRCYIC 293
C IC F +PV T C H FC C E RA RC +C
Sbjct: 15 CCICVNYFIDPVTTDCVHSFCRPCLCLCSEEGRAPMRCPLC 55
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 36.6 bits (83), Expect = 0.031
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 254 FRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYIC 293
F C +C + ++ PV C H FC +C E + P C +C
Sbjct: 27 FTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVC 67
>gi|157426898 tripartite motif-containing 10 isoform 1 [Homo
sapiens]
Length = 481
Score = 36.6 bits (83), Expect = 0.031
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 256 CFICRQAFQNPVVTKCRHYFCESCALEH-------FRATPRCYICDQP-TGGIFNPAKEL 307
C IC+ + PV C H FC +C + +P C +C +P G F P +L
Sbjct: 16 CPICQGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKEPFRPGSFRPNWQL 75
Query: 308 MAKLQKLQ 315
++ ++
Sbjct: 76 ANVVENIE 83
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,634,285
Number of Sequences: 37866
Number of extensions: 832031
Number of successful extensions: 4597
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 3745
Number of HSP's gapped (non-prelim): 971
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.