Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 30179909
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30179909 paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor [Homo sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso... 617 e-177
gi|30179915 paired immunoglobulin-like type 2 receptor beta isof... 367 e-102
gi|30179911 paired immunoglobulin-like type 2 receptor beta isof... 367 e-102
gi|30179907 paired immunoglobulin-like type 2 receptor alpha iso... 320 1e-87
gi|30179905 paired immunoglobulin-like type 2 receptor alpha iso... 317 1e-86
gi|38455398 NK inhibitory receptor precursor [Homo sapiens] 42 9e-04
gi|30179913 paired immunoglobulin-like type 2 receptor beta isof... 40 0.002
gi|46358066 hypothetical protein LOC388325 [Homo sapiens] 40 0.003
gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens] 39 0.004
gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens] 38 0.010
gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens] 38 0.010
gi|157168355 CD22 molecule [Homo sapiens] 38 0.013
gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens] 37 0.028
gi|154426280 V-set and immunoglobulin domain containing 4 isofor... 36 0.037
gi|27262663 colony stimulating factor 1 isoform b precursor [Hom... 33 0.24
gi|226529863 T-cell immunoglobulin and mucin domain containing 4... 33 0.31
gi|226498466 T-cell immunoglobulin and mucin domain containing 4... 33 0.31
gi|9507239 immunoglobulin iota chain precursor [Homo sapiens] 33 0.31
gi|169167859 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.53
gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Ho... 32 0.53
gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Ho... 32 0.53
gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens] 32 0.53
gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens] 32 0.53
gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens] 32 0.53
gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens] 32 0.53
gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens] 32 0.69
gi|113417084 PREDICTED: hypothetical protein [Homo sapiens] 32 0.69
gi|238624147 neuroplastin isoform c precursor [Homo sapiens] 32 0.69
gi|6912646 neuroplastin isoform b precursor [Homo sapiens] 32 0.69
gi|205277425 immunoglobulin superfamily, member 9 isoform a [Hom... 32 0.69
>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor [Homo sapiens]
Length = 303
Score = 617 bits (1590), Expect = e-177
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV 180
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV 180
Query: 181 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ 240
TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ
Sbjct: 181 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQ 240
Query: 241 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV 300
NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV
Sbjct: 241 NTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSV 300
Query: 301 LKA 303
LKA
Sbjct: 301 LKA 303
>gi|30179915 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 367 bits (943), Expect = e-102
Identities = 184/229 (80%), Positives = 199/229 (86%), Gaps = 10/229 (4%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV 180
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQAVTT TTTWR SSTTT GLRV
Sbjct: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTT--------TTTWRPSSTTTIAGLRV 172
Query: 181 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLR--WRRRKGQQ 227
T+ K S+SWH+SL+TA+ VA+AV VL +ILGL+CLL WRRRKG +
Sbjct: 173 TESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSR 221
>gi|30179911 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 367 bits (943), Expect = e-102
Identities = 184/229 (80%), Positives = 199/229 (86%), Gaps = 10/229 (4%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRV 180
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQAVTT TTTWR SSTTT GLRV
Sbjct: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTT--------TTTWRPSSTTTIAGLRV 172
Query: 181 TQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLR--WRRRKGQQ 227
T+ K S+SWH+SL+TA+ VA+AV VL +ILGL+CLL WRRRKG +
Sbjct: 173 TESKGHSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRKGSR 221
>gi|30179907 paired immunoglobulin-like type 2 receptor alpha
isoform 3 precursor [Homo sapiens]
Length = 175
Score = 320 bits (820), Expect = 1e-87
Identities = 154/159 (96%), Positives = 155/159 (97%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQR 159
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQ + TQR
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQR 159
>gi|30179905 paired immunoglobulin-like type 2 receptor alpha
isoform 2 precursor [Homo sapiens]
Length = 230
Score = 317 bits (811), Expect = 1e-86
Identities = 155/169 (91%), Positives = 156/169 (92%), Gaps = 5/169 (2%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQA-----VTTTTQRPSSMT 164
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQ TT + P T
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNT 169
Score = 164 bits (414), Expect = 1e-40
Identities = 79/80 (98%), Positives = 80/80 (100%)
Query: 224 KGQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAP 283
+GQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAP
Sbjct: 151 QGQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAP 210
Query: 284 PSHRPLKSPQNETLYSVLKA 303
PSHRPLKSPQNETLYSVLKA
Sbjct: 211 PSHRPLKSPQNETLYSVLKA 230
>gi|38455398 NK inhibitory receptor precursor [Homo sapiens]
Length = 290
Score = 41.6 bits (96), Expect = 9e-04
Identities = 75/326 (23%), Positives = 127/326 (38%), Gaps = 70/326 (21%)
Query: 7 LPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELATAPD 66
+PLL L L +L SG S + +T P ++ GS+ + + WE
Sbjct: 1 MPLLTLYLLLFWL-------SGYSIVTQITGPTTVNGLERGSLTVQCVYRSGWETYLK-- 51
Query: 67 VRISWRRGHFHRQSFYSTRPPSIHKDYV-NRLFLNWTEGQKSGFLRISNLQKQDQSVYFC 125
W RG R + ++ +R+ + + ++ + + +L K D Y+C
Sbjct: 52 ---WWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWC 108
Query: 126 RVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVTQGKR 185
+E G L +T VT P+ +T SS+ T TG +
Sbjct: 109 GIEKT-------------GNDLGVTVQVTID---PAPVTQE-ETSSSPTLTGHHL----- 146
Query: 186 RSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAR--EPFQNTE 243
D+ H L+ +V + + T+L +++L LL WR K QQ+ +P + +P + +
Sbjct: 147 --DNRHKLLKLSVLLPLIFTIL-LLLLVAASLLAWRMMKYQQKAAGMSPEQVLQPLEG-D 202
Query: 244 EPYENIRNEGQNTDP-----KLN-----------------PKDDGIVYASLALSSSTSPR 281
Y ++ + T P KL+ PK+D I YASL L +
Sbjct: 203 LCYADLTLQLAGTSPQKATTKLSSAQVDQVEVEYVTMASLPKED-ISYASLTLGAEDQEP 261
Query: 282 A------PPSHRPLKSPQNETLYSVL 301
SH P + P+ T YS +
Sbjct: 262 TYCNMGHLSSHLPGRGPEEPTEYSTI 287
>gi|30179913 paired immunoglobulin-like type 2 receptor beta
isoform b [Homo sapiens]
Length = 149
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1 MGRPLLLPLLPLLLPPAFLQP 21
MGRPLLLPLL LL PPAFLQP
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQP 21
>gi|46358066 hypothetical protein LOC388325 [Homo sapiens]
Length = 145
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 190 WHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQNTEEPYENI 249
W + + VA+ V +G+ ++ L C+ +W+ R+G+ + + P + + E+ YEN+
Sbjct: 15 WRNNFWIILAVAIIVVSVGLGLI-LYCVCKWQLRRGK-KWEIAKPLKHKQVDEEKMYENV 72
Query: 250 RNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRP 288
NE P L P++ + SL +SP+ PS P
Sbjct: 73 LNESPVQLPPLPPRN----WPSL---EDSSPQEAPSQPP 104
>gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens]
Length = 716
Score = 39.3 bits (90), Expect = 0.004
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 108 GFLRISNLQKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPS--SMTT 165
G L ISN+Q +D Y C + + R + GT L TQ + ++ S+
Sbjct: 482 GTLEISNIQIEDSGRYTCVAQNVQGADTRVATIKVNGTLLDGTQVLKIYVKQTESHSILV 541
Query: 166 TWRLSSTTTTTGLRVTQGKRRSDSWHISLETAVGVAV 202
+W+++S T+ L+ + + D+ HI+ V V V
Sbjct: 542 SWKVNSNVMTSNLKWSSATMKIDNPHITYTARVPVDV 578
>gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens]
Length = 551
Score = 38.1 bits (87), Expect = 0.010
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPW-ELATAPDV 67
+LPLLL P L GS P +Y + K ++ G V +P SF YPW ++P +
Sbjct: 1 MLPLLLLP--LLWGGSLQEKP--VYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPL 56
Query: 68 RISWRRG---HFHRQSFYSTRPP-SIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVY 123
+ W R ++ + + P + + R L +K+ L I + + +D Y
Sbjct: 57 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 116
Query: 124 FCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRP 160
F RVE GR S + KL++ VT ++P
Sbjct: 117 FFRVE-----RGRDVKYSYQQNKLNL--EVTALIEKP 146
>gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens]
Length = 396
Score = 38.1 bits (87), Expect = 0.010
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPW-ELATAPDV 67
+LPLLL P L GS P +Y + K ++ G V +P SF YPW ++P +
Sbjct: 1 MLPLLLLP--LLWGGSLQEKP--VYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPL 56
Query: 68 RISWRRG---HFHRQSFYSTRPP-SIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVY 123
+ W R ++ + + P + + R L +K+ L I + + +D Y
Sbjct: 57 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 116
Query: 124 FCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRP 160
F RVE GR S + KL++ VT ++P
Sbjct: 117 FFRVE-----RGRDVKYSYQQNKLNL--EVTALIEKP 146
>gi|157168355 CD22 molecule [Homo sapiens]
Length = 847
Score = 37.7 bits (86), Expect = 0.013
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 192 ISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREPFQNTEEPYENIRN 251
I AVG+ + +L + I GL RW+R + QQ + + + F ++ +
Sbjct: 684 IGRRVAVGLGSCLAILILAICGLKLQRRWKRTQSQQGLQENSSGQSFFVRNKKVRRAPLS 743
Query: 252 EGQNTDPKLNP-KDDGIVYASLALSSSTSPR-----APPSHRPLKSPQNETLYSVL 301
EG ++ NP +DGI Y +L PR + RP + YS L
Sbjct: 744 EGPHSLGCYNPMMEDGISYTTLRFPEMNIPRTGDAESSEMQRPPPDCDDTVTYSAL 799
>gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens]
Length = 328
Score = 36.6 bits (83), Expect = 0.028
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 18/137 (13%)
Query: 27 SGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELATAPDVRISWRRGHFH--------- 77
S P+ + + P +SA G + +P +F +P P I WR G +
Sbjct: 38 SSPAQRWSMQVPPEVSAEAGDAAVLPCTFTHPHRHYDGPLTAI-WRAGEPYAGPQVFRCA 96
Query: 78 --RQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRVELDTRSSG 135
R S S+H + RL N S LR+ L D YFCRVE
Sbjct: 97 AARGSELCQTALSLHGRF--RLLGNPRRNDLS--LRVERLALADDRRYFCRVEF--AGDV 150
Query: 136 RQQWQSIEGTKLSITQA 152
+++S G +L +T A
Sbjct: 151 HDRYESRHGVRLHVTAA 167
>gi|154426280 V-set and immunoglobulin domain containing 4 isoform 2
[Homo sapiens]
Length = 305
Score = 36.2 bits (82), Expect = 0.037
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 23/154 (14%)
Query: 110 LRISNLQKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSS-MTTTWR 168
L++S L+ D+S Y C V WQ+ +G ++ + Q+ SS + T
Sbjct: 98 LQLSTLEMDDRSHYTCEV----------TWQTPDGNQVVRDKITELRVQKHSSKLLKTKT 147
Query: 169 LSSTTTTTGLRVTQGKRRSDSWHISL-----ETAVGVAVAVTVLG-IMILGLICLLRWRR 222
+ TT T L+ T ++S W + ET+ G ++ V I+I+ L C++ +
Sbjct: 148 EAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFTM 207
Query: 223 ------RKGQQRTKATTPAREPFQNTEEPYENIR 250
RK Q+ AR + + E +R
Sbjct: 208 AYIMLCRKTSQQEHVYEAARAHAREANDSGETMR 241
>gi|27262663 colony stimulating factor 1 isoform b precursor [Homo
sapiens]
Length = 438
Score = 33.5 bits (75), Expect = 0.24
Identities = 50/236 (21%), Positives = 82/236 (34%), Gaps = 28/236 (11%)
Query: 8 PLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELATAPDV 67
PL P + P A L S G+ S L QP H P S +E P V
Sbjct: 210 PLAPSMAPVAGLTWEDSEGTEGSSLLPGEQPLHTVDPGSAKQRPPRSTCQSFEPPETPVV 269
Query: 68 RISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRV 127
+ S G + P + + + NW + SG S + +
Sbjct: 270 KDSTIGGSPQPRPSVGAFNPGMEDILDSAMGTNWVPEEASG--EASEIPVPQGT------ 321
Query: 128 ELDTRSSGRQQWQSIEGTKLSITQA-----VTTTTQRPSSMTTTWRLSSTTTTTGLRVTQ 182
EL G Q+ + A + Q+P+ +T R S +++ L+
Sbjct: 322 ELSPSRPGGGSMQTEPARPSNFLSASSPLPASAKGQQPADVTGHERQSEGSSSPQLQ--- 378
Query: 183 GKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREP 238
E+ + V +L ++ +G + RWRRR Q+ +A +P +P
Sbjct: 379 ------------ESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQP 422
>gi|226529863 T-cell immunoglobulin and mucin domain containing 4
isoform 1 [Homo sapiens]
Length = 378
Score = 33.1 bits (74), Expect = 0.31
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 110 LRISNLQKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSI---TQAVTTTTQRPSSMTTT 166
L I N + D VY CR+E+ W K+++ Q +TTT R ++ TT
Sbjct: 97 LTILNPSESDSGVYCCRIEV-------PGW--FNDVKINVRLNLQRASTTTHRTATTTTR 147
Query: 167 WRLSSTTTTTGLRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQ 226
+++ TTT T + + + G + +T + + CL +
Sbjct: 148 RTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTGTPLQMTTIAVFTTANTCLSLTPSTLPE 207
Query: 227 QRTKATTP 234
+ T TP
Sbjct: 208 EATGLLTP 215
>gi|226498466 T-cell immunoglobulin and mucin domain containing 4
isoform 2 [Homo sapiens]
Length = 350
Score = 33.1 bits (74), Expect = 0.31
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 110 LRISNLQKQDQSVYFCRVELDTRSSGRQQWQSIEGTKLSI---TQAVTTTTQRPSSMTTT 166
L I N + D VY CR+E+ W K+++ Q +TTT R ++ TT
Sbjct: 97 LTILNPSESDSGVYCCRIEV-------PGW--FNDVKINVRLNLQRASTTTHRTATTTTR 147
Query: 167 WRLSSTTTTTGLRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQ 226
+++ TTT T + + + G + +T + + CL +
Sbjct: 148 RTTTTSPTTTRQMTTTPAALPTTVVTTPDLTTGTPLQMTTIAVFTTANTCLSLTPSTLPE 207
Query: 227 QRTKATTP 234
+ T TP
Sbjct: 208 EATGLLTP 215
>gi|9507239 immunoglobulin iota chain precursor [Homo sapiens]
Length = 145
Score = 33.1 bits (74), Expect = 0.31
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 25 TGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELATAPDVRISWRRGHFHR--QSFY 82
TG GP + + QP +S+++G ++ + + ++ R GH R ++
Sbjct: 15 TGCGPQPV--LHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYF 72
Query: 83 STRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQ 138
S S R + + G+L IS LQ +D+++Y+C + RSS +++
Sbjct: 73 SQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYC--AMGARSSEKEE 126
>gi|169167859 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 214
Score = 32.3 bits (72), Expect = 0.53
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 148 SITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVTQGKRRSDSWHISLETAVGVAVAVTV 206
+IT TTT +++TTT +++TTTTT + T + S + T+ + T+
Sbjct: 136 TITTTTITTTTTTTTITTTTTITTTTTTTTITTTTTTTITTSTITTTTTSTTITTTTTI 194
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVT 181
T + T +TTTT +++TTT +TTTTT + T
Sbjct: 60 TTTTTTTTITTTTTTTTTITTTTTTITTTTTTTITTT 96
Score = 30.8 bits (68), Expect = 1.5
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 141 SIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVT 181
+I T + T TTTT +++TTT ++TTTTT + T
Sbjct: 92 TITTTTTTTTTITTTTTITTTTITTTTTTTTTTTTTTITTT 132
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVT 181
T + T +TTTT ++ TTT ++TTTTT + T
Sbjct: 70 TTTTTTTTITTTTTTITTTTTTTITTTTTTTTTITTT 106
Score = 28.9 bits (63), Expect = 5.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 150 TQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVT 181
T +TTTT +++TTT +++TT TT T
Sbjct: 90 TTTITTTTTTTTTITTTTTITTTTITTTTTTT 121
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 145 TKLSITQAVTTTT-QRPSSMTTTWRLSSTTTTTGLRVTQGKRRSDSWHISLETAVGVAVA 203
T +IT TTTT +++TTT ++ TTTT +T + + ++ T +
Sbjct: 138 TTTTITTTTTTTTITTTTTITTTTTTTTITTTTTTTITTSTITTTTTSTTITTTTTITTT 197
Query: 204 VTV 206
T+
Sbjct: 198 TTI 200
Score = 28.9 bits (63), Expect = 5.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVT 181
T +IT + TTT +++TTT +++TTT T T
Sbjct: 170 TTTTITTSTITTTTTSTTITTTTTITTTTTITTTTTT 206
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 129 LDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTT 176
L T ++ +I T + T TTTT ++ TTT ++TTTTT
Sbjct: 55 LPTTTTTTTTTTTITTTTTTTTTITTTTTTITTTTTTTITTTTTTTTT 102
>gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Homo
sapiens]
Length = 602
Score = 32.3 bits (72), Expect = 0.53
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYP---WELATAP 65
LLPLLLP + +GS PSY V + + G V + + YP W+ +TA
Sbjct: 15 LLPLLLP---VLGAGSLNKDPSYSLQVQ--RQVPVPEGLCVIVSCNLSYPRDGWDESTA- 68
Query: 66 DVRISWRRGHFHRQS----FYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQS 121
W +G ++ + + + +R L G+ S L I + Q++D++
Sbjct: 69 -AYGYWFKGRTSPKTGAPVATNNQSREVEMSTRDRFQLTGDPGKGSCSLVIRDAQREDEA 127
Query: 122 VYFCRVELDTR 132
YF RVE +R
Sbjct: 128 WYFFRVERGSR 138
>gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Homo
sapiens]
Length = 698
Score = 32.3 bits (72), Expect = 0.53
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYP---WELATAP 65
LLPLLLP + +GS PSY V + + G V + + YP W+ +TA
Sbjct: 15 LLPLLLP---VLGAGSLNKDPSYSLQVQ--RQVPVPEGLCVIVSCNLSYPRDGWDESTA- 68
Query: 66 DVRISWRRGHFHRQS----FYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQS 121
W +G ++ + + + +R L G+ S L I + Q++D++
Sbjct: 69 -AYGYWFKGRTSPKTGAPVATNNQSREVEMSTRDRFQLTGDPGKGSCSLVIRDAQREDEA 127
Query: 122 VYFCRVELDTR 132
YF RVE +R
Sbjct: 128 WYFFRVERGSR 138
>gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]
Length = 246
Score = 32.3 bits (72), Expect = 0.53
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 24/171 (14%)
Query: 66 DVRISWRR--------GHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQK 117
++RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 QDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTG 177
+D +YFC + G + +GT+LS+ + TT Q T R+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
Query: 178 LRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQR 228
+ + + +G+ VA ++ ++ LG+ L RRR+ + R
Sbjct: 159 ------RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRARLR 203
>gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]
Length = 210
Score = 32.3 bits (72), Expect = 0.53
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 24/171 (14%)
Query: 66 DVRISWRR--------GHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQK 117
++RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 QDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTG 177
+D +YFC + G + +GT+LS+ + TT Q T R+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
Query: 178 LRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQR 228
+ + + +G+ VA ++ ++ LG+ L RRR+ + R
Sbjct: 159 ------RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRARLR 203
>gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
Length = 243
Score = 32.3 bits (72), Expect = 0.53
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 24/171 (14%)
Query: 66 DVRISWRR--------GHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQK 117
++RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 QDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTG 177
+D +YFC + G + +GT+LS+ + TT Q T R+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
Query: 178 LRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQR 228
+ + + +G+ VA ++ ++ LG+ L RRR+ + R
Sbjct: 159 ------RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRARLR 203
>gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]
Length = 221
Score = 32.3 bits (72), Expect = 0.53
Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 24/171 (14%)
Query: 66 DVRISWRR--------GHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQK 117
++RI W R H + + + +IH + V + + L +++++
Sbjct: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
Query: 118 QDQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTG 177
+D +YFC + G + +GT+LS+ + TT Q T R+
Sbjct: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
Query: 178 LRVTQGKRRSDSWHISLETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQR 228
+ + + +G+ VA ++ ++ LG+ L RRR+ + R
Sbjct: 159 ------RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRARLR 203
>gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens]
Length = 365
Score = 32.0 bits (71), Expect = 0.69
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 202 VAVTVLGIMILG-LICLLRWRRRKGQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKL 260
V + +L + LG L C WRR++ +++++ T+P + F E ++++ + +
Sbjct: 227 VIIVILSALFLGTLACFCVWRRKRKEKQSE-TSP--KEFLTIYEDVKDLKTRRNHEQEQT 283
Query: 261 NPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSVLK 302
P +Y+ + SS AP S P TLYS+++
Sbjct: 284 FPGGGSTIYSMIQSQSS----APTSQEPA-----YTLYSLIQ 316
>gi|113417084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 32.0 bits (71), Expect = 0.69
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVTQGKRRSDSWHISLETAVGVAVAV 204
T + T +TTTT ++ TTT +++ TTTT +T + I+ T +
Sbjct: 98 TTTTTTTTITTTTTTTTTTTTTTTITTITTTTTTTITTTTTTTTITTITTTTTTTITTTT 157
Query: 205 TVL 207
T +
Sbjct: 158 TTI 160
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVTQGKRRSDSWHISLETAVGVAVAV 204
T +IT TTTT ++ TTT +++ TTTT +T + I+ T +
Sbjct: 118 TTTTITTITTTTTTTITTTTTTTTITTITTTTTTTITTTTTTITTTTITTTTTTTITTTT 177
Query: 205 TVLGI 209
T I
Sbjct: 178 TTTTI 182
Score = 30.8 bits (68), Expect = 1.5
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTT 176
T +IT TTTT +++TTT ++TTTTT
Sbjct: 88 TITTITTTTTTTTTTTTTITTTTTTTTTTTTT 119
Score = 29.6 bits (65), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVT 181
T ++ T TTTT + TTT ++TTTTT +T
Sbjct: 90 TTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITTIT 126
Score = 28.9 bits (63), Expect = 5.9
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVTQGKRRSDSWHISLETAVGVAVAV 204
T + T +TTTT S++TTT +STTT T + T + + I+ T
Sbjct: 62 TTTTTTTTITTTT---STITTTTTTTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTTT 118
Query: 205 T 205
T
Sbjct: 119 T 119
Score = 28.9 bits (63), Expect = 5.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 141 SIEGTKLSITQAVTTTTQRPSSMTTTWRLSSTTTTT 176
+I T + T TTTT + TTT +++TTTTT
Sbjct: 105 TITTTTTTTTTTTTTTTITTITTTTTTTITTTTTTT 140
Score = 28.5 bits (62), Expect = 7.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 150 TQAVTTTTQRPSSMTTTWRLSSTTTTT 176
T +TTTT +++TTT +TTTTT
Sbjct: 57 TTTITTTTTTTTTITTTTSTITTTTTT 83
Score = 28.5 bits (62), Expect = 7.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 145 TKLSITQAVTTTTQRPSSMTTTWRLSSTTTTTGLRVT 181
T + T TTTT +++TTT + TTTTT +T
Sbjct: 147 TTTTTTITTTTTTITTTTITTTTTTTITTTTTTTTIT 183
>gi|238624147 neuroplastin isoform c precursor [Homo sapiens]
Length = 394
Score = 32.0 bits (71), Expect = 0.69
Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 26/165 (15%)
Query: 10 LPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFS--------FYYPWEL 61
LP L + L SGS GP +A G V+ P S F ++
Sbjct: 6 LPSALALSLLLVSGSLLPGPG-----------AAQNAGFVKSPMSETKLTGDAFELYCDV 54
Query: 62 ATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKS-GFLRISNLQKQDQ 120
+P I W +R + K R+ +N G LRI+ L +D
Sbjct: 55 VGSPTPEIQWWYAEVNRAESFRQLWDGARK---RRVTVNTAYGSNGVSVLRITRLTLEDS 111
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTT 165
Y CR D + + +Q SI + QA + Q+P +T+
Sbjct: 112 GTYECRASNDPKRNDLRQNPSITWIR---AQATISVLQKPRIVTS 153
>gi|6912646 neuroplastin isoform b precursor [Homo sapiens]
Length = 398
Score = 32.0 bits (71), Expect = 0.69
Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 26/165 (15%)
Query: 10 LPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFS--------FYYPWEL 61
LP L + L SGS GP +A G V+ P S F ++
Sbjct: 6 LPSALALSLLLVSGSLLPGPG-----------AAQNAGFVKSPMSETKLTGDAFELYCDV 54
Query: 62 ATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKS-GFLRISNLQKQDQ 120
+P I W +R + K R+ +N G LRI+ L +D
Sbjct: 55 VGSPTPEIQWWYAEVNRAESFRQLWDGARK---RRVTVNTAYGSNGVSVLRITRLTLEDS 111
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQRPSSMTT 165
Y CR D + + +Q SI + QA + Q+P +T+
Sbjct: 112 GTYECRASNDPKRNDLRQNPSITWIR---AQATISVLQKPRIVTS 153
>gi|205277425 immunoglobulin superfamily, member 9 isoform a [Homo
sapiens]
Length = 1179
Score = 32.0 bits (71), Expect = 0.69
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 69 ISWRRGHFHRQSF--YSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCR 126
I W R F F + P I DYV R+ L QK L+I L+ +DQ Y CR
Sbjct: 55 IEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRL-----QKGASLQIEGLRVEDQGWYECR 109
Query: 127 V 127
V
Sbjct: 110 V 110
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,566,918
Number of Sequences: 37866
Number of extensions: 570887
Number of successful extensions: 4192
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 3134
Number of HSP's gapped (non-prelim): 1004
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.