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Search of human proteins with 30089919
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30089919 DNA polymerase delta interacting protein 3 isoform
2 [Homo sapiens]
(392 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30089919 DNA polymerase delta interacting protein 3 isoform 2... 763 0.0
gi|29837655 DNA polymerase delta interacting protein 3 isoform 1... 747 0.0
gi|238776833 THO complex 4 [Homo sapiens] 53 4e-07
gi|21450675 RNA binding motif protein 46 [Homo sapiens] 41 0.002
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 40 0.004
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 40 0.004
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 40 0.004
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 38 0.014
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 38 0.014
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 38 0.018
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 38 0.018
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 38 0.018
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 38 0.018
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 38 0.018
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 38 0.018
gi|33620747 myelin expression factor 2 [Homo sapiens] 34 0.20
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 33 0.34
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 33 0.34
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi... 33 0.34
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.44
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.44
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 32 0.76
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 32 0.76
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 32 0.76
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 31 1.7
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 31 1.7
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 31 2.2
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 31 2.2
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 31 2.2
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 31 2.2
>gi|30089919 DNA polymerase delta interacting protein 3 isoform 2
[Homo sapiens]
Length = 392
Score = 763 bits (1969), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
Sbjct: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
Query: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
Sbjct: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
Query: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQNLYDLDEDDDGIASVPTKQMKFAASGGFLH 180
ISLKRSSPAAFINPPIGTVTPALKLTKTIQNLYDLDEDDDGIASVPTKQMKFAASGGFLH
Sbjct: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQNLYDLDEDDDGIASVPTKQMKFAASGGFLH 180
Query: 181 HMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPA 240
HMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPA
Sbjct: 181 HMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPA 240
Query: 241 AEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAIT 300
AEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAIT
Sbjct: 241 AEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAIT 300
Query: 301 AYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNP 360
AYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNP
Sbjct: 301 AYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNP 360
Query: 361 PAEVDPDTILKALFKSSGASVTTQPTEFKIKL 392
PAEVDPDTILKALFKSSGASVTTQPTEFKIKL
Sbjct: 361 PAEVDPDTILKALFKSSGASVTTQPTEFKIKL 392
>gi|29837655 DNA polymerase delta interacting protein 3 isoform 1
[Homo sapiens]
Length = 421
Score = 747 bits (1929), Expect = 0.0
Identities = 392/421 (93%), Positives = 392/421 (93%), Gaps = 29/421 (6%)
Query: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI
Sbjct: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
Query: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK
Sbjct: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
Query: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQ-----------------------------N 151
ISLKRSSPAAFINPPIGTVTPALKLTKTIQ N
Sbjct: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN 180
Query: 152 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA 211
LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA
Sbjct: 181 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA 240
Query: 212 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF 271
LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF
Sbjct: 241 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELF 300
Query: 272 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP 331
CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP
Sbjct: 301 CVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQP 360
Query: 332 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK 391
ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK
Sbjct: 361 ILLRLSDSPSMKKESELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFKIK 420
Query: 392 L 392
L
Sbjct: 421 L 421
>gi|238776833 THO complex 4 [Homo sapiens]
Length = 264
Score = 53.1 bits (126), Expect = 4e-07
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 250 GTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYK 303
G K+ V+NL V++ DI ELF G LK+A + + G A+V F +K DA+ A K
Sbjct: 112 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 171
Query: 304 KYNNRCLDGQPMKCNL 319
+YN LDG+PM L
Sbjct: 172 QYNGVPLDGRPMNIQL 187
>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
Length = 533
Score = 41.2 bits (95), Expect = 0.002
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 255 VNNLHPRVTEEDIVELFCVC--GALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDG 312
V NL TEE I F GA++R + + A V F ++DA+ A N +C+DG
Sbjct: 240 VRNLMISTTEETIKAEFNKFKPGAVERVKKLRD-YAFVHFFNREDAVAAMSVMNGKCIDG 298
Query: 313 QPMKCNL------------HMNGNVITSDQPILL----RLSDSPSMKKESELPRRVNSAS 356
++ L H+NG + + + +++ S ++ K LP R+N
Sbjct: 299 ASIEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLPTLPARLNGQH 358
Query: 357 SSNPP 361
S +PP
Sbjct: 359 SPSPP 363
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 249 EGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP---------GVAEVVFVKKDDAI 299
E ++ V NL TEED+ +LF G L + L +P G A + F+ + A+
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPL--SELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 300 TAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSN 359
AY + + + G+ LH+ + I + S S KK+ E + NSASS N
Sbjct: 458 KAYSEVDGQVFQGR----MLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHN 513
Score = 28.9 bits (63), Expect = 8.4
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 223 NMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRAR- 281
N S + +EE +E + P G + + NL+ TEE + E+F G +K
Sbjct: 708 NSSAKMEEEEEEEEEEEESLP------GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSI 761
Query: 282 ---------LVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 319
L+ G V + K + A A K+ +DG ++ +
Sbjct: 762 SKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 249 EGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP---------GVAEVVFVKKDDAI 299
E ++ V NL TEED+ +LF G L + L +P G A + F+ + A+
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPL--SELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 300 TAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSN 359
AY + + + G+ LH+ + I + S S KK+ E + NSASS N
Sbjct: 458 KAYSEVDGQVFQGR----MLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHN 513
Score = 28.9 bits (63), Expect = 8.4
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 223 NMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRAR- 281
N S + +EE +E + P G + + NL+ TEE + E+F G +K
Sbjct: 708 NSSAKMEEEEEEEEEEEESLP------GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSI 761
Query: 282 ---------LVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 319
L+ G V + K + A A K+ +DG ++ +
Sbjct: 762 SKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 249 EGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP---------GVAEVVFVKKDDAI 299
E ++ V NL TEED+ +LF G L + L +P G A + F+ + A+
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPL--SELHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 300 TAYKKYNNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSN 359
AY + + + G+ LH+ + I + S S KK+ E + NSASS N
Sbjct: 458 KAYSEVDGQVFQGR----MLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHN 513
Score = 28.9 bits (63), Expect = 8.4
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 16/107 (14%)
Query: 223 NMSRTLVNKEEPPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRAR- 281
N S + +EE +E + P G + + NL+ TEE + E+F G +K
Sbjct: 708 NSSAKMEEEEEEEEEEEESLP------GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSI 761
Query: 282 ---------LVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNL 319
L+ G V + K + A A K+ +DG ++ +
Sbjct: 762 SKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRI 808
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.1 bits (87), Expect = 0.014
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 161 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 220
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 279
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 280 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQ 313
+ +HP G A V F D+A A K + +DGQ
Sbjct: 190 IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 231
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.1 bits (87), Expect = 0.014
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 161 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 220
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 279
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 280 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQ 313
+ +HP G A V F D+A A K + +DGQ
Sbjct: 190 IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 231
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.018
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 161 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 220
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 279
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 280 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 330
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 331 ---------PILLRLSDSPSMKKESELPRR 351
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.018
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 161 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 220
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 279
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 280 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 330
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 331 ---------PILLRLSDSPSMKKESELPRR 351
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.018
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 161 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 220
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 279
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 280 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 330
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 331 ---------PILLRLSDSPSMKKESELPRR 351
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.018
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 161 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 220
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 279
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 280 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 330
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 331 ---------PILLRLSDSPSMKKESELPRR 351
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.018
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 161 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 220
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 279
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 280 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 330
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 331 ---------PILLRLSDSPSMKKESELPRR 351
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 37.7 bits (86), Expect = 0.018
Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 20/210 (9%)
Query: 161 GIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKA 220
G +S ++ ++SG + SS S S + ++ + ++ + S +
Sbjct: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPL-EGTKMTVNNLHPRVTEEDIVELFCVCGALKR 279
N R+ +K +PPK SP + TK+ + L VT++ I+E+F G +K
Sbjct: 131 HDNRRRSR-SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM 189
Query: 280 ARL----VHP----GVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHMNGNVITSDQ- 330
+ +HP G A V F D+A A K + +DGQ + + + + +
Sbjct: 190 IDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRR 249
Query: 331 ---------PILLRLSDSPSMKKESELPRR 351
P + L P M++ S PRR
Sbjct: 250 FSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
>gi|33620747 myelin expression factor 2 [Homo sapiens]
Length = 600
Score = 34.3 bits (77), Expect = 0.20
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 221 LTNMSRTLVNKEEPPKELPAAEPVLSPLE----GTKMTVNNLHPRVTEEDIVELFCVCGA 276
L N+ +++N P E V+S L+ G+ + V NL +V + + E+F + G
Sbjct: 205 LMNLPPSILNNPNIPPE------VISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGT 258
Query: 277 LKRARLVHP------GVAEVVFVKKDDAITAYKKYNNRCLDGQPM 315
+KRA + G+ V F + +A+ A +N + L +PM
Sbjct: 259 VKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPM 303
>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
sapiens]
Length = 594
Score = 33.5 bits (75), Expect = 0.34
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 241 AEPVLSPLEGTKMTVNNLHPR-----VTEEDIVELF--CVCGALKRARLVHPGVAEVVFV 293
AEP + E T +V L+ R +EE I + F GA++R + + A V F
Sbjct: 224 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-YAFVHFS 282
Query: 294 KKDDAITAYKKYNNRCLDGQPMKCNL 319
++DA+ A K N + LDG P++ L
Sbjct: 283 NREDAVEAMKALNGKVLDGSPIEVTL 308
>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
sapiens]
Length = 594
Score = 33.5 bits (75), Expect = 0.34
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 241 AEPVLSPLEGTKMTVNNLHPR-----VTEEDIVELF--CVCGALKRARLVHPGVAEVVFV 293
AEP + E T +V L+ R +EE I + F GA++R + + A V F
Sbjct: 216 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-YAFVHFS 274
Query: 294 KKDDAITAYKKYNNRCLDGQPMKCNL 319
++DA+ A K N + LDG P++ L
Sbjct: 275 NREDAVEAMKALNGKVLDGSPIEVTL 300
>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
sapiens]
Length = 586
Score = 33.5 bits (75), Expect = 0.34
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 241 AEPVLSPLEGTKMTVNNLHPR-----VTEEDIVELF--CVCGALKRARLVHPGVAEVVFV 293
AEP + E T +V L+ R +EE I + F GA++R + + A V F
Sbjct: 216 AEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD-YAFVHFS 274
Query: 294 KKDDAITAYKKYNNRCLDGQPMKCNL 319
++DA+ A K N + LDG P++ L
Sbjct: 275 NREDAVEAMKALNGKVLDGSPIEVTL 300
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 33.1 bits (74), Expect = 0.44
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 185 LSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPV 244
L ++ + S LP+T++ P PSSI + + ++ EP K A +PV
Sbjct: 2462 LETTAVLRSNGLPVTRICTTAPPPVPPKPSSIPSGLV------FTHRPEPSKPPIAPKPV 2515
Query: 245 LSPLEGTKMTVNNLHPRVT 263
+ L T ++HP+ T
Sbjct: 2516 IPQLPTTTQKPTDIHPKPT 2534
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 33.1 bits (74), Expect = 0.44
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 185 LSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEEPPKELPAAEPV 244
L ++ + S LP+T++ P PSSI + + ++ EP K A +PV
Sbjct: 2462 LETTAVLRSNGLPVTRICTTAPPPVPPKPSSIPSGLV------FTHRPEPSKPPIAPKPV 2515
Query: 245 LSPLEGTKMTVNNLHPRVT 263
+ L T ++HP+ T
Sbjct: 2516 IPQLPTTTQKPTDIHPKPT 2534
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 32.3 bits (72), Expect = 0.76
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 249 EGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP-----GVAEVVFVKKDDAITAYK 303
+G K+ + NL + +E + F G++ R +++ G + F +DA A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMT 350
Query: 304 KYNNRCLDGQPMKCNL 319
+ N R L +P+ L
Sbjct: 351 EMNGRILGSKPLSIAL 366
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 32.3 bits (72), Expect = 0.76
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 245 LSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP-------GVAEVVFVKKDD 297
L+P + T + V+NL +T D+ +F G + + ++ GVA ++F+ KD
Sbjct: 5 LAPSKST-VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63
Query: 298 AITAYKKYNNRCLDGQPMKCNL 319
A + NN+ L G+ +K ++
Sbjct: 64 AQNCTRAINNKQLFGRVIKASI 85
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 32.3 bits (72), Expect = 0.76
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 102 KQQTTVPQKPRQVADAREKISLKRSSPAAFINP-------PIGTVTPALKLTKTIQNLY 153
+QQ PQ+ R V A L SP+ + P P+G VTPAL L NL+
Sbjct: 357 QQQQPPPQQSRPVLQAEPHPQLASVSPSVALQPSSEAHAMPLGPVTPALPLQCPTANLH 415
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 31.2 bits (69), Expect = 1.7
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 255 VNNLHPRVTEEDIVELFCVCGALKRARLVHP-------GVAEVVFVKKDDAITAYKKYNN 307
V +LHP VTE + E F G + R+ G A + F + DA A N
Sbjct: 15 VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNF 74
Query: 308 RCLDGQPMK 316
L GQP++
Sbjct: 75 EMLKGQPIR 83
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 31.2 bits (69), Expect = 1.7
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 240 AAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLV-------HPGVAEVVF 292
AA P+ + + V L +V+E + ELF G + + H G V F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 293 VKKDDAITAYKKYNNRCLDGQPMKCN 318
+ ++DA A K N L G+P++ N
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVN 87
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 30.8 bits (68), Expect = 2.2
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 110 KPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQNLYDLDEDDDGIASVPTKQ 169
+P + E S+ P IN I TV A+ ++ + + DED+DG V T +
Sbjct: 1502 QPPEFDSGVETFSIHAEKPKYQINN-ISTVPKAIPVSPSA---VEEDEDEDGHTVVATAR 1557
Query: 170 MKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLV 229
F ++GG LSS + +S +P A+P + + + R
Sbjct: 1558 GIFNSNGGV------LSSIETGVSIIIP-----------QGAIPEGVEQEIYFKVCRD-- 1598
Query: 230 NKEEPPKELPAAEPVLSPL 248
N PP + E +LSPL
Sbjct: 1599 NSILPPLDKEKGETLLSPL 1617
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 30.8 bits (68), Expect = 2.2
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 23/139 (16%)
Query: 110 KPRQVADAREKISLKRSSPAAFINPPIGTVTPALKLTKTIQNLYDLDEDDDGIASVPTKQ 169
+P + E S+ P IN I TV A+ ++ + + DED+DG V T +
Sbjct: 1582 QPPEFDSGVETFSIHAEKPKYQINN-ISTVPKAIPVSPSA---VEEDEDEDGHTVVATAR 1637
Query: 170 MKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLV 229
F ++GG LSS + +S +P A+P + + + R
Sbjct: 1638 GIFNSNGGV------LSSIETGVSIIIP-----------QGAIPEGVEQEIYFKVCRD-- 1678
Query: 230 NKEEPPKELPAAEPVLSPL 248
N PP + E +LSPL
Sbjct: 1679 NSILPPLDKEKGETLLSPL 1697
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 30.8 bits (68), Expect = 2.2
Identities = 60/284 (21%), Positives = 100/284 (35%), Gaps = 25/284 (8%)
Query: 123 LKRSSPAAFINP-PIGTVTPALKLTKTIQNLYDLDEDDDGIASVPTKQMKFAASGGFLHH 181
LK ++ +N P G++ TK L + +G+ ++ + G L
Sbjct: 3781 LKNKKSSSLLNQKPEGSICSEDDCTKD-NKLVEKQNPAEGLQTLGAQMQGGFGCGNQLPK 3839
Query: 182 MAGLSSSKLSMSK--------ALPLTKVVQNDAYTAPALPSSIRTKALTNMSRTLVNKEE 233
G S +K SK A P +K + D A+ SS T L N
Sbjct: 3840 TDGGSETKKQRSKRTQRTGEKAAPRSKKRKKDEEEKQAMYSSTDTFTHLKQQNNLSNPPT 3899
Query: 234 PPKELPAAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFV 293
PP LP P P+ KM + T E++ V + + + + P ++ F
Sbjct: 3900 PPASLPPTPP---PMACQKMA----NGFATTEELAGKAGVLVSHEVTKTLGPKPFQLPFR 3952
Query: 294 KKDDAITAYKKYNNRCLD-----GQPMKCN---LHMNGNVITSDQPILLRLSDSPSMKKE 345
+DD + + +D P N L + + D P S SP
Sbjct: 3953 PQDDLLARALAQGPKTVDVPASLPTPPHNNQEELRIQDHCGDRDTPDSFVPSSSPESVVG 4012
Query: 346 SELPRRVNSASSSNPPAEVDPDTILKALFKSSGASVTTQPTEFK 389
E+ R + + P E P I+ L ++G S ++ + K
Sbjct: 4013 VEVSRYPDLSLVKEEPPEPVPSPIIPILPSTAGKSSESRRNDIK 4056
>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
Length = 2115
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 46 RTATFQQRFDARQKIGLSDAR-----LKLGVKDAREKLLQKDARFRIKGKVQDAREMLNS 100
+T FQ R R K L+D R L+L + + R+ L +KDA+ + + D +LN
Sbjct: 210 QTPQFQMR---RLKKQLADERSNRDELELELAENRKLLTEKDAQIAMMQQRIDRLALLN- 265
Query: 101 RKQQTTVPQKPRQVADAREK 120
++Q P +P+++ + R+K
Sbjct: 266 -EKQAASPLEPKELEELRDK 284
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,149,457
Number of Sequences: 37866
Number of extensions: 635224
Number of successful extensions: 2036
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2005
Number of HSP's gapped (non-prelim): 82
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.