Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 12232469
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12232469 required for meiotic nuclear division 5 homolog A
[Homo sapiens]
(391 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12232469 required for meiotic nuclear division 5 homolog A [H... 794 0.0
gi|21362098 required for meiotic nuclear division 5 homolog B [H... 570 e-162
gi|62953131 macrophage erythroblast attacher isoform 1 [Homo sap... 75 1e-13
gi|62953129 macrophage erythroblast attacher isoform 2 [Homo sap... 47 4e-05
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 34 0.20
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 34 0.20
gi|6912734 transportin 3 [Homo sapiens] 33 0.34
gi|27734761 non-SMC element 2, MMS21 homolog [Homo sapiens] 32 0.98
gi|37595555 ring finger protein 125 [Homo sapiens] 31 1.7
gi|9558729 golgi associated, gamma adaptin ear containing, ARF b... 31 1.7
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 31 2.2
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 31 2.2
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 31 2.2
gi|30794216 tripartite motif-containing 56 [Homo sapiens] 30 3.7
gi|118498362 kinectin 1 isoform b [Homo sapiens] 30 4.9
gi|118498356 kinectin 1 isoform a [Homo sapiens] 30 4.9
gi|118498368 kinectin 1 isoform c [Homo sapiens] 30 4.9
gi|33620775 kinectin 1 isoform a [Homo sapiens] 30 4.9
gi|15208643 ADP-ribosylation factor domain protein 1 isoform gam... 30 4.9
gi|15208641 ADP-ribosylation factor domain protein 1 isoform bet... 30 4.9
gi|4502197 ADP-ribosylation factor domain protein 1 isoform alph... 30 4.9
gi|223555975 tropomyosin 4 isoform 1 [Homo sapiens] 29 6.4
gi|151101270 troponin I, cardiac [Homo sapiens] 29 8.3
gi|197333692 leucine rich repeat containing 8 family, member B [... 29 8.3
gi|21245134 leucine rich repeat containing 8 family, member B [H... 29 8.3
gi|156105697 ring finger and CCCH-type zinc finger domains 2 iso... 29 8.3
gi|73695473 roquin [Homo sapiens] 29 8.3
gi|156105699 ring finger and CCCH-type zinc finger domains 2 iso... 29 8.3
gi|48527952 golgi associated, gamma adaptin ear containing, ARF ... 29 8.3
>gi|12232469 required for meiotic nuclear division 5 homolog A [Homo
sapiens]
Length = 391
Score = 794 bits (2050), Expect = 0.0
Identities = 391/391 (100%), Positives = 391/391 (100%)
Query: 1 MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLV 60
MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLV
Sbjct: 1 MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLV 60
Query: 61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNE 120
LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNE
Sbjct: 61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNE 120
Query: 121 VMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNR 180
VMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNR
Sbjct: 121 VMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVSNR 180
Query: 181 EMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVY 240
EMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVY
Sbjct: 181 EMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSLVY 240
Query: 241 LRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIK 300
LRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIK
Sbjct: 241 LRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALINIK 300
Query: 301 AVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISR 360
AVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISR
Sbjct: 301 AVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHIISR 360
Query: 361 DALNKMFNGSKLKCPYCPMEQSPGDAKQIFF 391
DALNKMFNGSKLKCPYCPMEQSPGDAKQIFF
Sbjct: 361 DALNKMFNGSKLKCPYCPMEQSPGDAKQIFF 391
>gi|21362098 required for meiotic nuclear division 5 homolog B [Homo
sapiens]
Length = 393
Score = 570 bits (1468), Expect = e-162
Identities = 275/393 (69%), Positives = 325/393 (82%), Gaps = 2/393 (0%)
Query: 1 MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLV 60
M+QC VEREL+KVL KF YGQ CER LEEL+ Y G L+ E+ + Q LS TLSLV
Sbjct: 1 MEQCACVERELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLV 60
Query: 61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQA--DSQRLL 118
++QCC++IKDTVQKLASDHKDIHSSVSRVGKAID+NFDS+I V D W A Q++L
Sbjct: 61 MSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQIL 120
Query: 119 NEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVS 178
+VEH ++QGML VAEELCQES L+VD K+PF+ELNRILEAL + L PALEWAVS
Sbjct: 121 QMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVS 180
Query: 179 NREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSL 238
+R+ L+ NSSLEFKLHRL+FI LL GG Q EAL YA++FQPFA HQ++IQV+MGSL
Sbjct: 181 HRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSL 240
Query: 239 VYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALIN 298
VYLR G+E SPY HLLD++ WA+IC+ FTRDAC+LLGLSVESPLSVSF++GCVALP L+N
Sbjct: 241 VYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMN 300
Query: 299 IKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHII 358
IKAVIEQRQCTGVWN KDELPIE++LG KCWYHS+FACPILRQQT+D+NPP+KL+CGH+I
Sbjct: 301 IKAVIEQRQCTGVWNHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVI 360
Query: 359 SRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF 391
SRDALNK+ NG KLKCPYCPMEQ+P D K+I F
Sbjct: 361 SRDALNKLINGGKLKCPYCPMEQNPADGKRIIF 393
>gi|62953131 macrophage erythroblast attacher isoform 1 [Homo
sapiens]
Length = 396
Score = 74.7 bits (182), Expect = 1e-13
Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 11/265 (4%)
Query: 115 QRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALE 174
++ ++ +MVEH R G + A +L ++SG+ D E F+ + E+L+ R L
Sbjct: 122 RKRMDRMMVEHLLRCGYYNTAVKLARQSGIE-DLVNIEMFLTAKEVEESLERRETATCLA 180
Query: 175 WAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQR-EALQYA-KNFQPFALNHQKDIQ 232
W N+ L S LEF L FI L+ N+R +A+++A K+F + +++
Sbjct: 181 WCHDNKSRLRKMKSCLEFSLRIQEFIELIR---QNKRLDAVRHARKHFSQAEGSQLDEVR 237
Query: 233 VLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVA 292
MG L + SPY LLD +W + F D L L S +++ AG A
Sbjct: 238 QAMGMLAF-PPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSA 296
Query: 293 L--PALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPM 350
+ P + C ++L + + +S C I +NNPPM
Sbjct: 297 IKTPQCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCA--NSRLVCKISGDVMNENNPPM 354
Query: 351 KLVCGHIISRDALNKMFNGSKLKCP 375
L G++ ++L + K+ CP
Sbjct: 355 MLPNGYVYGYNSLLSIRQDDKVVCP 379
>gi|62953129 macrophage erythroblast attacher isoform 2 [Homo
sapiens]
Length = 355
Score = 46.6 bits (109), Expect = 4e-05
Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 52/265 (19%)
Query: 115 QRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALE 174
++ ++ +MVEH R G + A +L ++SG+
Sbjct: 122 RKRMDRMMVEHLLRCGYYNTAVKLARQSGIE----------------------------- 152
Query: 175 WAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQR-EALQYA-KNFQPFALNHQKDIQ 232
S LEF L FI L+ N+R +A+++A K+F + +++
Sbjct: 153 -------------SCLEFSLRIQEFIELIR---QNKRLDAVRHARKHFSQAEGSQLDEVR 196
Query: 233 VLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVA 292
MG L + SPY LLD +W + F D L L S +++ AG A
Sbjct: 197 QAMGMLAF-PPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSA 255
Query: 293 L--PALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPM 350
+ P + C ++L + + +S C I +NNPPM
Sbjct: 256 IKTPQCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCA--NSRLVCKISGDVMNENNPPM 313
Query: 351 KLVCGHIISRDALNKMFNGSKLKCP 375
L G++ ++L + K+ CP
Sbjct: 314 MLPNGYVYGYNSLLSIRQDDKVVCP 338
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 34.3 bits (77), Expect = 0.20
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 333 IFACPILRQQTTDNNPPMKLV-CGHIISRDALNKMFNGS--KLKCPYC 377
+ CPI + T+ KL+ CGH I R L K+ S ++CP+C
Sbjct: 17 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 64
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 34.3 bits (77), Expect = 0.20
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 333 IFACPILRQQTTDNNPPMKLV-CGHIISRDALNKMFNGS--KLKCPYC 377
+ CPI + T+ KL+ CGH I R L K+ S ++CP+C
Sbjct: 17 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 64
>gi|6912734 transportin 3 [Homo sapiens]
Length = 923
Score = 33.5 bits (75), Expect = 0.34
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 117 LLNEVMVEHFFRQGMLDVAEELC--------QESGLSVDPSQKEPFVEL-NRILEALKVR 167
L++E +E RQG+LD+ + LC Q++GL P + L R ++ V
Sbjct: 707 LVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVT 766
Query: 168 VLR-----PALEWAVSN 179
+LR P L+WA+++
Sbjct: 767 LLRSQVVIPILQWAIAS 783
>gi|27734761 non-SMC element 2, MMS21 homolog [Homo sapiens]
Length = 247
Score = 32.0 bits (71), Expect = 0.98
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 334 FACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNG--SKLKCPYCP 378
F CPI +++ P VCGH DA+ +M + K YCP
Sbjct: 167 FTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCP 211
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 31.2 bits (69), Expect = 1.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 349 PMKLVCGHIISRDALNKMFNGSKLKCPYC 377
P++ CGH+ R + +K CPYC
Sbjct: 47 PVRTRCGHVFCRSCIATSLKNNKWTCPYC 75
>gi|9558729 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 1 [Homo sapiens]
Length = 639
Score = 31.2 bits (69), Expect = 1.7
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 42 EILQSHGQDAELSGT---LSLVLTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAID 94
E++ SH Q +G+ L L Q C+R++ T+ +LASD +D +++ + +A D
Sbjct: 230 EMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQAND 285
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 30.8 bits (68), Expect = 2.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 349 PMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQI 389
P+ VC H + +D L++ F CP C + A Q+
Sbjct: 734 PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV 774
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 30.8 bits (68), Expect = 2.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 349 PMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQI 389
P+ VC H + +D L++ F CP C + A Q+
Sbjct: 747 PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV 787
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 30.8 bits (68), Expect = 2.2
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 21/196 (10%)
Query: 19 SGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLVLTQCCKRIKDTVQKLASD 78
S Y RG ++ T G + +GQ+ + TL + IKD +Q A++
Sbjct: 318 SSYSSASTRGTYGILSKTVGTQDTPYMVNGQEIP-ADTLGQFPS-----IKDVLQAAAAE 371
Query: 79 HKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEEL 138
H+D V + DS SSV ++ A++Q + +V+ E +G L+
Sbjct: 372 HQD---QGQEVNGEVRSRRDSICSSVSLESS-AAETQEEMLQVLKEKMRLEGQLE----- 422
Query: 139 CQESGLSVDPSQK-EPFVELNRILEALKVRVLRPALEWAVSNREMLIAQNSSLEFKLHRL 197
LS++ SQ + EL L AL + L+ +E + S+++ + +S ++
Sbjct: 423 ----ALSLEASQALKEKAELQAQLAALSTK-LQAQVECSHSSQQRQDSLSSEVDTLKQSC 477
Query: 198 YFISLLMGGTTNQREA 213
+ + M N EA
Sbjct: 478 WDLERAMTDLQNMLEA 493
>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
Length = 755
Score = 30.0 bits (66), Expect = 3.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 335 ACPILRQQTTDNNPPMKLVCGHIISRDALNKMFNGSKLKCPYC 377
AC I +Q P L C H +D L ++ +G +++CP C
Sbjct: 20 ACKICLEQL---RAPKTLPCLHTYCQDCLAQLADGGRVRCPEC 59
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 29.6 bits (65), Expect = 4.9
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 17/187 (9%)
Query: 29 LEELIDYTGGLKHEILQSHGQDAE------LSGTLSLVLTQCCKRIKDTVQKLASDHKDI 82
++++++ LK +I Q H Q A L+ L V+ + K+IK T LAS+ +
Sbjct: 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRL 630
Query: 83 HSSVSRVGKAIDKNF--DSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQ 140
S + + NF +++ + QA + L ++ + + + + EE Q
Sbjct: 631 TSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQ 690
Query: 141 ESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVS---NREMLIAQNSSLEFKLHRL 197
++ E F LN +ALK V + L+ VS N++++ ++ K +L
Sbjct: 691 HE----ISNKMEEFKILNDQNKALKSEVQK--LQTLVSEQPNKDVVEQMEKCIQEKDEKL 744
Query: 198 YFISLLM 204
+ L+
Sbjct: 745 KTVEELL 751
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 29.6 bits (65), Expect = 4.9
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 17/187 (9%)
Query: 29 LEELIDYTGGLKHEILQSHGQDAE------LSGTLSLVLTQCCKRIKDTVQKLASDHKDI 82
++++++ LK +I Q H Q A L+ L V+ + K+IK T LAS+ +
Sbjct: 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRL 630
Query: 83 HSSVSRVGKAIDKNF--DSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQ 140
S + + NF +++ + QA + L ++ + + + + EE Q
Sbjct: 631 TSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQ 690
Query: 141 ESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVS---NREMLIAQNSSLEFKLHRL 197
++ E F LN +ALK V + L+ VS N++++ ++ K +L
Sbjct: 691 HE----ISNKMEEFKILNDQNKALKSEVQK--LQTLVSEQPNKDVVEQMEKCIQEKDEKL 744
Query: 198 YFISLLM 204
+ L+
Sbjct: 745 KTVEELL 751
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 29.6 bits (65), Expect = 4.9
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 17/187 (9%)
Query: 29 LEELIDYTGGLKHEILQSHGQDAE------LSGTLSLVLTQCCKRIKDTVQKLASDHKDI 82
++++++ LK +I Q H Q A L+ L V+ + K+IK T LAS+ +
Sbjct: 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRL 630
Query: 83 HSSVSRVGKAIDKNF--DSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQ 140
S + + NF +++ + QA + L ++ + + + + EE Q
Sbjct: 631 TSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQ 690
Query: 141 ESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVS---NREMLIAQNSSLEFKLHRL 197
++ E F LN +ALK V + L+ VS N++++ ++ K +L
Sbjct: 691 HE----ISNKMEEFKILNDQNKALKSEVQK--LQTLVSEQPNKDVVEQMEKCIQEKDEKL 744
Query: 198 YFISLLM 204
+ L+
Sbjct: 745 KTVEELL 751
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 29.6 bits (65), Expect = 4.9
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 17/187 (9%)
Query: 29 LEELIDYTGGLKHEILQSHGQDAE------LSGTLSLVLTQCCKRIKDTVQKLASDHKDI 82
++++++ LK +I Q H Q A L+ L V+ + K+IK T LAS+ +
Sbjct: 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLASERDRL 630
Query: 83 HSSVSRVGKAIDKNF--DSDISSVGIDGCWQADSQRLLNEVMVEHFFRQGMLDVAEELCQ 140
S + + NF +++ + QA + L ++ + + + + EE Q
Sbjct: 631 TSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQ 690
Query: 141 ESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVS---NREMLIAQNSSLEFKLHRL 197
++ E F LN +ALK V + L+ VS N++++ ++ K +L
Sbjct: 691 HE----ISNKMEEFKILNDQNKALKSEVQK--LQTLVSEQPNKDVVEQMEKCIQEKDEKL 744
Query: 198 YFISLLM 204
+ L+
Sbjct: 745 KTVEELL 751
>gi|15208643 ADP-ribosylation factor domain protein 1 isoform gamma
[Homo sapiens]
Length = 546
Score = 29.6 bits (65), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 349 PMKLVCGHIISRDALNKM-FNGSKLKCPYCPMEQSPGDA 386
P L+CGH + D L ++ +G ++CP+ GD+
Sbjct: 46 PRLLLCGHTVCHDCLTRLPLHGRAIRCPFDRQVTDLGDS 84
>gi|15208641 ADP-ribosylation factor domain protein 1 isoform beta
[Homo sapiens]
Length = 569
Score = 29.6 bits (65), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 349 PMKLVCGHIISRDALNKM-FNGSKLKCPYCPMEQSPGDA 386
P L+CGH + D L ++ +G ++CP+ GD+
Sbjct: 46 PRLLLCGHTVCHDCLTRLPLHGRAIRCPFDRQVTDLGDS 84
>gi|4502197 ADP-ribosylation factor domain protein 1 isoform alpha
[Homo sapiens]
Length = 574
Score = 29.6 bits (65), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 349 PMKLVCGHIISRDALNKM-FNGSKLKCPYCPMEQSPGDA 386
P L+CGH + D L ++ +G ++CP+ GD+
Sbjct: 46 PRLLLCGHTVCHDCLTRLPLHGRAIRCPFDRQVTDLGDS 84
>gi|223555975 tropomyosin 4 isoform 1 [Homo sapiens]
Length = 284
Score = 29.3 bits (64), Expect = 6.4
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 18/166 (10%)
Query: 2 DQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAE-----LSGT 56
D+C VE EL + K G ++ E+L D K E+ + DAE L+
Sbjct: 34 DKCKQVEEELTHLQKKLKGTEDELDKYSEDLKD--AQEKLELTEKKASDAEGDVAALNRR 91
Query: 57 LSLV---LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCW--- 110
+ LV L + +R+ +QKL K S R K I+ D + I
Sbjct: 92 IQLVEEELDRAQERLATALQKLEEAEKAADES-ERGMKVIENRAMKDEEKMEIQEMQLKE 150
Query: 111 ----QADSQRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKE 152
++ R EV + +G L+ AEE + S L ++E
Sbjct: 151 AKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEE 196
>gi|151101270 troponin I, cardiac [Homo sapiens]
Length = 210
Score = 28.9 bits (63), Expect = 8.3
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 23 QLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLVLTQCCKRIKDTVQKLASDHKDI 82
Q+ ++ LE + G K L + Q EL+G L C+++ V K+ + DI
Sbjct: 55 QIAKQELEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDI 114
Query: 83 HSSVSR 88
+ V++
Sbjct: 115 EAKVTK 120
>gi|197333692 leucine rich repeat containing 8 family, member B
[Homo sapiens]
Length = 803
Score = 28.9 bits (63), Expect = 8.3
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 171 PALEWAVSNREMLIAQNSSLE------FKLHRLYFISLLMGGTTNQREALQYAKNFQPFA 224
PA A+SN E L ++++E F +L+++ L T E +QY N Q FA
Sbjct: 649 PAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLHYLDLSYNHLTFIPEEIQYLSNLQYFA 708
Query: 225 LNHQKDIQVLMGSL 238
+ + +I++L L
Sbjct: 709 VTN-NNIEMLPDGL 721
>gi|21245134 leucine rich repeat containing 8 family, member B [Homo
sapiens]
Length = 803
Score = 28.9 bits (63), Expect = 8.3
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 171 PALEWAVSNREMLIAQNSSLE------FKLHRLYFISLLMGGTTNQREALQYAKNFQPFA 224
PA A+SN E L ++++E F +L+++ L T E +QY N Q FA
Sbjct: 649 PAQIGALSNLEQLSLDHNNIENLPLQLFLCTKLHYLDLSYNHLTFIPEEIQYLSNLQYFA 708
Query: 225 LNHQKDIQVLMGSL 238
+ + +I++L L
Sbjct: 709 VTN-NNIEMLPDGL 721
>gi|156105697 ring finger and CCCH-type zinc finger domains 2
isoform 1 [Homo sapiens]
Length = 1191
Score = 28.9 bits (63), Expect = 8.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 335 ACPILRQQTTDN-NPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQS 382
+CPI + +N + P+ L C H + + LNK+ + CP +Q+
Sbjct: 13 SCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKA------CPFDQT 55
>gi|73695473 roquin [Homo sapiens]
Length = 1133
Score = 28.9 bits (63), Expect = 8.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 335 ACPILRQQTTDN-NPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQS 382
+CPI Q + P+ L CGH + + LNK+ + CP +Q+
Sbjct: 13 SCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKA------CPFDQT 55
>gi|156105699 ring finger and CCCH-type zinc finger domains 2
isoform 2 [Homo sapiens]
Length = 1064
Score = 28.9 bits (63), Expect = 8.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 335 ACPILRQQTTDN-NPPMKLVCGHIISRDALNKMFNGSKLKCPYCPMEQS 382
+CPI + +N + P+ L C H + + LNK+ + CP +Q+
Sbjct: 13 SCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKA------CPFDQT 55
>gi|48527952 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 2 [Homo sapiens]
Length = 552
Score = 28.9 bits (63), Expect = 8.3
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 42 EILQSHGQDAELSGT---LSLVLTQCCKRIKDTVQKLASDHKD 81
E++ SH Q +G+ L L Q C+R++ T+ +LASD +D
Sbjct: 230 EMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASDTED 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,424,173
Number of Sequences: 37866
Number of extensions: 601731
Number of successful extensions: 1382
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1364
Number of HSP's gapped (non-prelim): 34
length of query: 391
length of database: 18,247,518
effective HSP length: 104
effective length of query: 287
effective length of database: 14,309,454
effective search space: 4106813298
effective search space used: 4106813298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.