Guide to the Human Genome
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Name: SLC44A5 Sequence: fasta or formatted (717aa) NCBI GI: 194239633
Description:

solute carrier family 44, member 5 isoform B

Referenced in:

Acetylcholine
Solute Carrier Families

Other entries for this name:
alt prot [719aa] solute carrier family 44, member 5 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         46           2
 C cysteine            4.2         30           2
 D aspartate           3.8         27           3
 E glutamate           3.5         25           3
 F phenylalanine       7.3         52           2
 G glycine             6.1         44           2
 H histidine           1.4         10           1
 I isoleucine          8.8         63           2
 K lysine              4.6         33           2
 L leucine            11.6         83           3
 M methionine          2.1         15           2
 N asparagine          3.9         28           1
 P proline             4.6         33           1
 Q glutamine           3.8         27           2
 R arginine            3.9         28           2
 S serine              4.5         32           2
 T threonine           6.6         47           2
 V valine              6.1         44           2
 W tryptophan          1.8         13           1
 Y tyrosine            5.2         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 44, member 5 isoform B 
SLC44A5               0.973   solute carrier family 44, member 5 isoform A 
SLC44A2               0.572   solute carrier family 44, member 2 isoform 2 
SLC44A2               0.571   solute carrier family 44, member 2 isoform 1 
SLC44A4               0.461   choline transporter-like protein 4 
SLC44A1               0.159   CDW92 antigen 
SLC44A3               0.137   solute carrier family 44, member 3 isoform 1 
SLC44A3               0.130   solute carrier family 44, member 3 isoform 2 
TM6SF1                0.008   transmembrane 6 superfamily member 1 isoform 1 [Hom...
TM6SF1                0.008   transmembrane 6 superfamily member 1 isoform 2 [Hom...
KCNJ2                 0.006   potassium inwardly-rectifying channel J2 
CDH5                  0.005   cadherin 5, type 2 preproprotein 
MFSD1                 0.003   major facilitator superfamily domain containing 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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