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Search of human proteins with 29501809
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29501809 coiled-coil domain containing 116 [Homo sapiens]
(613 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29501809 coiled-coil domain containing 116 [Homo sapiens] 1239 0.0
gi|115529449 upstream binding transcription factor, RNA polymera... 42 0.002
gi|115529451 upstream binding transcription factor, RNA polymera... 42 0.002
gi|7657671 upstream binding transcription factor, RNA polymerase... 42 0.002
gi|7661690 coiled-coil domain containing 9 [Homo sapiens] 41 0.003
gi|4757900 calreticulin precursor [Homo sapiens] 40 0.008
gi|51477718 TATA box binding protein-associated factor, RNA poly... 39 0.018
gi|55956788 nucleolin [Homo sapiens] 37 0.041
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 37 0.041
gi|156071452 nardilysin isoform b [Homo sapiens] 37 0.053
gi|156071450 nardilysin isoform a [Homo sapiens] 37 0.053
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 37 0.053
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 37 0.070
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 37 0.070
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 37 0.070
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 36 0.091
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 36 0.091
gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens] 36 0.091
gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens] 36 0.091
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 36 0.091
gi|18093112 ABT1-associated protein [Homo sapiens] 36 0.091
gi|42740903 MTERF domain containing 2 [Homo sapiens] 36 0.12
gi|14670268 RD RNA-binding protein [Homo sapiens] 36 0.12
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 36 0.12
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 36 0.12
gi|168823443 RAD54-like 2 [Homo sapiens] 36 0.12
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 36 0.12
gi|33188443 microfilament and actin filament cross-linker protei... 35 0.16
gi|33188445 microfilament and actin filament cross-linker protei... 35 0.16
gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens] 35 0.16
>gi|29501809 coiled-coil domain containing 116 [Homo sapiens]
Length = 613
Score = 1239 bits (3206), Expect = 0.0
Identities = 613/613 (100%), Positives = 613/613 (100%)
Query: 1 MARCRHHSGYLADDEASHSMCSARVQLPKKPLVPEMRPACKPGRVPHPPSTCGSSALQGQ 60
MARCRHHSGYLADDEASHSMCSARVQLPKKPLVPEMRPACKPGRVPHPPSTCGSSALQGQ
Sbjct: 1 MARCRHHSGYLADDEASHSMCSARVQLPKKPLVPEMRPACKPGRVPHPPSTCGSSALQGQ 60
Query: 61 RRNKRHPQPFGHFLDFLTESQVLDSLETVVEKATERMAAMKTEAGVPLVEVQDPVEVPSG 120
RRNKRHPQPFGHFLDFLTESQVLDSLETVVEKATERMAAMKTEAGVPLVEVQDPVEVPSG
Sbjct: 61 RRNKRHPQPFGHFLDFLTESQVLDSLETVVEKATERMAAMKTEAGVPLVEVQDPVEVPSG 120
Query: 121 GRRAHARPSLSTVHRHRVRPTLCTGHPNNYPSSSSSMSNCHSSLMAGCLGSHSRDSDLGA 180
GRRAHARPSLSTVHRHRVRPTLCTGHPNNYPSSSSSMSNCHSSLMAGCLGSHSRDSDLGA
Sbjct: 121 GRRAHARPSLSTVHRHRVRPTLCTGHPNNYPSSSSSMSNCHSSLMAGCLGSHSRDSDLGA 180
Query: 181 QGSLPPVRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLS 240
QGSLPPVRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLS
Sbjct: 181 QGSLPPVRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLS 240
Query: 241 WFSGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRT 300
WFSGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRT
Sbjct: 241 WFSGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRT 300
Query: 301 LNFLADHRLFPALQSVVSQAVDKLRGAHCRDGRPLFPTSLEPTSDLPPLGSEPAKPTNGG 360
LNFLADHRLFPALQSVVSQAVDKLRGAHCRDGRPLFPTSLEPTSDLPPLGSEPAKPTNGG
Sbjct: 301 LNFLADHRLFPALQSVVSQAVDKLRGAHCRDGRPLFPTSLEPTSDLPPLGSEPAKPTNGG 360
Query: 361 QPYASPRPTVSSPKMLQRKRKDRGGSPSMSSAQVATRFKLKSPCSSSRFTKKKPLPSISS 420
QPYASPRPTVSSPKMLQRKRKDRGGSPSMSSAQVATRFKLKSPCSSSRFTKKKPLPSISS
Sbjct: 361 QPYASPRPTVSSPKMLQRKRKDRGGSPSMSSAQVATRFKLKSPCSSSRFTKKKPLPSISS 420
Query: 421 KSSMSHFSNRLYEELADFLTQQAASLVIRKYEFEKDLSKQLGFFSFPITHVLRDLSLGLK 480
KSSMSHFSNRLYEELADFLTQQAASLVIRKYEFEKDLSKQLGFFSFPITHVLRDLSLGLK
Sbjct: 421 KSSMSHFSNRLYEELADFLTQQAASLVIRKYEFEKDLSKQLGFFSFPITHVLRDLSLGLK 480
Query: 481 KVKGSRIHLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQAT 540
KVKGSRIHLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQAT
Sbjct: 481 KVKGSRIHLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQAT 540
Query: 541 EPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFK 600
EPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFK
Sbjct: 541 EPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFK 600
Query: 601 DEDQDEDKDEDGV 613
DEDQDEDKDEDGV
Sbjct: 601 DEDQDEDKDEDGV 613
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 572 GSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
G S S + ++E D+ E +DEDED+ +D+D+DED + +G
Sbjct: 670 GDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEG 710
Score = 36.2 bits (82), Expect = 0.091
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 554 RQLSPLEPKLYMS-------ACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDE 606
+ LSP + Y + T + PKS + + ++E +DE++++ +DED++E
Sbjct: 598 KSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEE 657
Query: 607 DKDEDG 612
+ DE+G
Sbjct: 658 EDDENG 663
Score = 36.2 bits (82), Expect = 0.091
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 573 SSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
SS ++ D++E DE+E++ +DED DED DED
Sbjct: 665 SSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDED 703
Score = 35.0 bits (79), Expect = 0.20
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 580 DMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
D +G D +E EDE E DE++++D+DED
Sbjct: 664 DSSEDGGDSSESSSEDESEDGDENEEDDEDED 695
Score = 33.9 bits (76), Expect = 0.45
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 582 DNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
++E D+ + +DEDEDE +++D++ D EDG
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDG 669
Score = 31.2 bits (69), Expect = 2.9
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 430 RLYEELADFLTQQAASLVIRKYEFEKDLSK--QLGFFSFPITHVLRDLSLGLKKVKGSRI 487
R EL++ AA+ +K +F+ + K G+ F +L + L +K +
Sbjct: 503 RYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFS-QELLSNGELNHLPLKERMV 561
Query: 488 HLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQATEPCRSLY 547
+ S R +K K A + + H S+ P A + R
Sbjct: 562 EIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLS--PQDRAAYKEYISNKRKSM 619
Query: 548 TNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKD-----E 602
T L R +P + + + + S +D D+E D+ E +DE+ D +D E
Sbjct: 620 TKL---RGPNPKSSRTTLQSKSE--SEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSE 674
Query: 603 DQDEDKDEDG 612
ED+ EDG
Sbjct: 675 SSSEDESEDG 684
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 572 GSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
G S S + ++E D+ E +DEDED+ +D+D+DED + +G
Sbjct: 670 GDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEG 710
Score = 36.2 bits (82), Expect = 0.091
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 554 RQLSPLEPKLYMS-------ACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDE 606
+ LSP + Y + T + PKS + + ++E +DE++++ +DED++E
Sbjct: 598 KSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEE 657
Query: 607 DKDEDG 612
+ DE+G
Sbjct: 658 EDDENG 663
Score = 36.2 bits (82), Expect = 0.091
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 573 SSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
SS ++ D++E DE+E++ +DED DED DED
Sbjct: 665 SSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDED 703
Score = 35.0 bits (79), Expect = 0.20
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 580 DMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
D +G D +E EDE E DE++++D+DED
Sbjct: 664 DSSEDGGDSSESSSEDESEDGDENEEDDEDED 695
Score = 33.9 bits (76), Expect = 0.45
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 582 DNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
++E D+ + +DEDEDE +++D++ D EDG
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDG 669
Score = 31.2 bits (69), Expect = 2.9
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 430 RLYEELADFLTQQAASLVIRKYEFEKDLSK--QLGFFSFPITHVLRDLSLGLKKVKGSRI 487
R EL++ AA+ +K +F+ + K G+ F +L + L +K +
Sbjct: 503 RYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFS-QELLSNGELNHLPLKERMV 561
Query: 488 HLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQATEPCRSLY 547
+ S R +K K A + + H S+ P A + R
Sbjct: 562 EIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLS--PQDRAAYKEYISNKRKSM 619
Query: 548 TNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKD-----E 602
T L R +P + + + + S +D D+E D+ E +DE+ D +D E
Sbjct: 620 TKL---RGPNPKSSRTTLQSKSE--SEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSE 674
Query: 603 DQDEDKDEDG 612
ED+ EDG
Sbjct: 675 SSSEDESEDG 684
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 41.6 bits (96), Expect = 0.002
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 572 GSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
G S S + ++E D+ E +DEDED+ +D+D+DED + +G
Sbjct: 707 GDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEG 747
Score = 36.2 bits (82), Expect = 0.091
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 554 RQLSPLEPKLYMS-------ACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDE 606
+ LSP + Y + T + PKS + + ++E +DE++++ +DED++E
Sbjct: 635 KSLSPQDRAAYKEYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEE 694
Query: 607 DKDEDG 612
+ DE+G
Sbjct: 695 EDDENG 700
Score = 36.2 bits (82), Expect = 0.091
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 573 SSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
SS ++ D++E DE+E++ +DED DED DED
Sbjct: 702 SSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDED 740
Score = 35.0 bits (79), Expect = 0.20
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 580 DMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
D +G D +E EDE E DE++++D+DED
Sbjct: 701 DSSEDGGDSSESSSEDESEDGDENEEDDEDED 732
Score = 33.9 bits (76), Expect = 0.45
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 582 DNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
++E D+ + +DEDEDE +++D++ D EDG
Sbjct: 676 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDG 706
Score = 31.2 bits (69), Expect = 2.9
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 15/190 (7%)
Query: 430 RLYEELADFLTQQAASLVIRKYEFEKDLSK--QLGFFSFPITHVLRDLSLGLKKVKGSRI 487
R EL++ AA+ +K +F+ + K G+ F +L + L +K +
Sbjct: 540 RYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFS-QELLSNGELNHLPLKERMV 598
Query: 488 HLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQATEPCRSLY 547
+ S R +K K A + + H S+ P A + R
Sbjct: 599 EIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLS--PQDRAAYKEYISNKRKSM 656
Query: 548 TNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKD-----E 602
T L R +P + + + + S +D D+E D+ E +DE+ D +D E
Sbjct: 657 TKL---RGPNPKSSRTTLQSKSE--SEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSE 711
Query: 603 DQDEDKDEDG 612
ED+ EDG
Sbjct: 712 SSSEDESEDG 721
>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
Length = 531
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 500 RKLEESKRARQASRLSTSHCST-ETPSVQQEPATHTAQDQATEPCRSLYTNLPASRQLSP 558
R+ +A+ A R + H ET PA T Q P S + SP
Sbjct: 346 RRKSSRPQAKAAPRAYSDHDDRWETKEGAASPAPETPQ--------------PTSPETSP 391
Query: 559 LEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
E + PP+ + +NEG + E ED EDE ++E + E+ DE+
Sbjct: 392 KETPMQPPEIPAPAHRPPEDEGEENEGEEDEEWEDISEDEEEEEIEVEEGDEE 444
>gi|4757900 calreticulin precursor [Homo sapiens]
Length = 417
Score = 39.7 bits (91), Expect = 0.008
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
K + + E DK + ED+DEDE +ED++ED++ED
Sbjct: 374 KKRKEEEEAEDKEDDEDKDEDEEDEEDKEEDEEED 408
Score = 37.4 bits (85), Expect = 0.041
Identities = 16/37 (43%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQ--DEDKDED 611
K ++ D + +++ E ED+++DE KDED+ +EDK+ED
Sbjct: 368 KEEEEDKKRKEEEEAEDKEDDEDKDEDEEDEEDKEED 404
Score = 33.5 bits (75), Expect = 0.59
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 582 DNEGRDKAEIED---EDEDEFKDEDQDEDKDED 611
D E R K E ED ++E+E +D++ DEDKDED
Sbjct: 362 DEEQRLKEEEEDKKRKEEEEAEDKEDDEDKDED 394
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 38.5 bits (88), Expect = 0.018
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 580 DMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
D + D + +DEDEDE +DED+DEDK+E+
Sbjct: 327 DSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEE 358
Score = 37.0 bits (84), Expect = 0.053
Identities = 13/33 (39%), Positives = 26/33 (78%)
Query: 579 KDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
++M ++ R + +++++DE +DED+DED+DED
Sbjct: 322 REMFSDSRSNNDDDEDEDDEDEDEDEDEDEDED 354
Score = 34.3 bits (77), Expect = 0.35
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 580 DMDNEGRDKAEIEDEDEDEFKDEDQDEDKDE 610
D D + D+ E EDEDEDE K+E++++ +E
Sbjct: 335 DEDEDDEDEDEDEDEDEDEDKEEEEEDCSEE 365
Score = 33.5 bits (75), Expect = 0.59
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 571 MGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDE 610
M S + D D + D+ E EDEDEDE DED++E++++
Sbjct: 324 MFSDSRSNNDDDEDEDDEDEDEDEDEDE--DEDKEEEEED 361
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 37.4 bits (85), Expect = 0.041
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 579 KDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDE 610
K+ E D+ E +D +EDE DED+DED+DE
Sbjct: 138 KNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDE 169
Score = 35.8 bits (81), Expect = 0.12
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 516 TSHCSTETPSVQQEPATHTAQDQATEPCRSLYTNLPASRQLSP----LEPKLYMSACTGM 571
T + TP+ ++ A + A P + T PA +P P + A G
Sbjct: 69 TKKVAVATPA--KKAAVTPGKKAAATPAKKTVT--PAKAVTTPGKKGATPGKALVATPGK 124
Query: 572 GSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+ +K N K E DE+ED+ +ED+++D+DED
Sbjct: 125 KGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDED 164
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 578 SKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
++D D E D+ E +D+DED+ D+D+D++++E+
Sbjct: 233 AEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEE 266
Score = 35.4 bits (80), Expect = 0.16
Identities = 12/37 (32%), Positives = 28/37 (75%)
Query: 575 PPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
P K+K++ + ++ + EDED+D+ +D++ D+D+D++
Sbjct: 226 PVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDE 262
Score = 34.7 bits (78), Expect = 0.26
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 587 DKAEIEDEDEDEFKDEDQDEDKDEDGV 613
D E ED+D +E +++D+DED+DED +
Sbjct: 144 DSDEEEDDDSEEDEEDDEDEDEDEDEI 170
Score = 33.9 bits (76), Expect = 0.45
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 531 ATHTAQDQATEPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAE 590
A T + P +++ T P + +P + + G +K+ N ++ ++
Sbjct: 89 AAATPAKKTVTPAKAVTT--PGKKGATPGKALVATPGKKGAAIPAKGAKNGKNAKKEDSD 146
Query: 591 IEDEDEDEFKDEDQDEDKDED 611
E+ED+D +DE+ DED+DED
Sbjct: 147 -EEEDDDSEEDEEDDEDEDED 166
Score = 33.1 bits (74), Expect = 0.77
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDE 610
K +D D E D +E EDE++DE DED+DED+ E
Sbjct: 141 KKEDSDEEEDDDSE-EDEEDDE--DEDEDEDEIE 171
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 571 MGSSPPKSKDMDNEGRDKAEIEDEDEDEFK-DEDQDEDKDED 611
M ++P K K KA+ EDEDE + DED+D+D DED
Sbjct: 211 METTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDED 252
Score = 31.6 bits (70), Expect = 2.2
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+ +D + + D+ + +DED+++ DED +E+++E+
Sbjct: 234 EDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEE 268
Score = 31.2 bits (69), Expect = 2.9
Identities = 9/35 (25%), Positives = 27/35 (77%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+ ++ D+E D + ED+++D+ +D++++E+++E+
Sbjct: 236 EDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEE 270
Score = 30.4 bits (67), Expect = 5.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 572 GSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDE 606
G + K + E D E E++DEDE +DED+ E
Sbjct: 137 GKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIE 171
Score = 30.4 bits (67), Expect = 5.0
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 582 DNEGRDKAEIEDEDEDEFKDEDQDEDKDEDGV 613
D + D + +DED+D+ DE+++E+++E+ V
Sbjct: 242 DEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPV 273
Score = 30.0 bits (66), Expect = 6.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 15/53 (28%)
Query: 574 SPPKSKDMDNEGRDKAEIE---------------DEDEDEFKDEDQDEDKDED 611
S +D ++E D+ EIE ++DED+ DED D+D+++D
Sbjct: 153 SEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDD 205
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 37.4 bits (85), Expect = 0.041
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 572 GSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
GS + D E D E ED+++D+ D+D D+D DED
Sbjct: 240 GSVESSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDED 279
Score = 35.0 bits (79), Expect = 0.20
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 582 DNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
D E D + +D+D+D+ D+D+D++ +EDG
Sbjct: 256 DGEDEDDEDDDDDDDDDDDDDDEDDEDEEDG 286
Score = 33.9 bits (76), Expect = 0.45
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 573 SSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
S + ++ +++G D+ + +D+D+D+ D+D DED DED
Sbjct: 245 SEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDED-DED 282
Score = 33.1 bits (74), Expect = 0.77
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 570 GMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
G S + +D ++E + E +++D+D+ D+D D+D+D++
Sbjct: 240 GSVESSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDEDDE 281
Score = 31.2 bits (69), Expect = 2.9
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 579 KDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+D D+E D + +D+D+D+ DED+++ ++E+
Sbjct: 258 EDEDDEDDDDDDDDDDDDDDEDDEDEEDGEEEN 290
>gi|156071452 nardilysin isoform b [Homo sapiens]
Length = 1151
Score = 37.0 bits (84), Expect = 0.053
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 540 TEPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDK-----AEIEDE 594
++P + Y L Q + M TG + + ++++ E D AEIED+
Sbjct: 108 SDPKQYRYIKLQNGLQALLISDLSNMEGKTGNTTDDEEEEEVEEEEEDDDEDSGAEIEDD 167
Query: 595 DEDEFKDEDQDEDKDED 611
DE+ F DED+ +D+ +D
Sbjct: 168 DEEGFDDEDEFDDEHDD 184
Score = 32.7 bits (73), Expect = 1.0
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 557 SPLEPKLYMSACTGMGSSPPKSKDMDN-EGRDKAEIEDEDEDEFKDEDQD---------E 606
SP +PK Y G D+ N EG+ +DE+E+E ++E++D E
Sbjct: 106 SPSDPKQYRYIKLQNGLQALLISDLSNMEGKTGNTTDDEEEEEVEEEEEDDDEDSGAEIE 165
Query: 607 DKDEDG 612
D DE+G
Sbjct: 166 DDDEEG 171
>gi|156071450 nardilysin isoform a [Homo sapiens]
Length = 1219
Score = 37.0 bits (84), Expect = 0.053
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 540 TEPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDK-----AEIEDE 594
++P + Y L Q + M TG + + ++++ E D AEIED+
Sbjct: 108 SDPKQYRYIKLQNGLQALLISDLSNMEGKTGNTTDDEEEEEVEEEEEDDDEDSGAEIEDD 167
Query: 595 DEDEFKDEDQDEDKDED 611
DE+ F DED+ +D+ +D
Sbjct: 168 DEEGFDDEDEFDDEHDD 184
Score = 32.7 bits (73), Expect = 1.0
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 557 SPLEPKLYMSACTGMGSSPPKSKDMDN-EGRDKAEIEDEDEDEFKDEDQD---------E 606
SP +PK Y G D+ N EG+ +DE+E+E ++E++D E
Sbjct: 106 SPSDPKQYRYIKLQNGLQALLISDLSNMEGKTGNTTDDEEEEEVEEEEEDDDEDSGAEIE 165
Query: 607 DKDEDG 612
D DE+G
Sbjct: 166 DDDEEG 171
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 37.0 bits (84), Expect = 0.053
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 22/118 (18%)
Query: 517 SHCSTETPSVQQEPATHTAQDQATEPCRSL------YTNLPASRQ--LSPLEPKLYMSAC 568
S + E S+ + P+ + + Q + +SL TNL R+ L+ Y+
Sbjct: 48 SMANVELSSLARLPSLNKLRKQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGF 107
Query: 569 TGMGSSPPKSKDMDNEGRDKAEIEDED--------------EDEFKDEDQDEDKDEDG 612
+ P S++ D+E D+ + E+E+ E+E +DED+DED+DE G
Sbjct: 108 DQEDNEAPDSEEEDDEDGDEDDEEEEENEAGPPEGYEEEEEEEEEEDEDEDEDEDEAG 165
Score = 33.1 bits (74), Expect = 0.77
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 584 EGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
EG ++ E E+E+EDE +DED+DE E G
Sbjct: 141 EGYEEEEEEEEEEDEDEDEDEDEAGSELG 169
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 36.6 bits (83), Expect = 0.070
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
K K+ + D+ + E+E ++E +DE+ DED++EDG
Sbjct: 319 KKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDG 354
Score = 33.9 bits (76), Expect = 0.45
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+ ++ ++E ++ E ++EDEDE DED++ED D++
Sbjct: 323 EEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGDDE 357
Score = 33.1 bits (74), Expect = 0.77
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
K K + E + E E+E++DE +DED+++D+DE+
Sbjct: 318 KKKKEEEENEEDEEDEEEEKDE-EDEDEEDDEDEE 351
Score = 32.7 bits (73), Expect = 1.0
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 573 SSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
S K ++ + E + E E ++EDE +++D+DE++D D
Sbjct: 317 SKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGD 355
Score = 32.0 bits (71), Expect = 1.7
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 578 SKDMDNEGRDKAEIEDEDEDEFKD-EDQDEDKDED 611
+K + ++ E ++EDE+E KD ED+DE+ DED
Sbjct: 315 AKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDED 349
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 36.6 bits (83), Expect = 0.070
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 578 SKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+K + ++ E ++EDE+E KDED+DE+ DED
Sbjct: 315 AKSKKKKEEEENEEDEEDEEEEKDEDEDEEDDED 348
Score = 35.8 bits (81), Expect = 0.12
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
KSK E ++ + EDE+E++ +DED+++D+DE+
Sbjct: 316 KSKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEE 350
Score = 35.0 bits (79), Expect = 0.20
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 574 SPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
S K ++ +NE ++ E E++DEDE +++D+DE+ +D
Sbjct: 317 SKKKKEEEENEEDEEDEEEEKDEDEDEEDDEDEEDGDD 354
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 36.6 bits (83), Expect = 0.070
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 551 PASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDE 610
P + P E +A G S + ++++ + + EDED+DE D+D+D+D+D+
Sbjct: 1652 PDAAAPGPREGAAAAAAAAGESSQEDEEEELELPEEEAEDDEDEDDDE-DDDDEDDDEDD 1710
Query: 611 D 611
D
Sbjct: 1711 D 1711
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 36.2 bits (82), Expect = 0.091
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 579 KDMDNEGRDKAEIEDED-EDEFKDEDQDEDKDEDG 612
++ D EG D+ + E+ED E+E DE++DED+D +G
Sbjct: 188 EEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEG 222
Score = 33.1 bits (74), Expect = 0.77
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 13/46 (28%)
Query: 579 KDMDNEGRDKAEI---EDEDEDEFKDEDQDE----------DKDED 611
KD +NE ++ E+ EDEDED D+D+DE DKDED
Sbjct: 198 KDXENEDGEEEELDEEEDEDEDVEGDDDKDEVSEEEEEFGLDKDED 243
Score = 32.3 bits (72), Expect = 1.3
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEF--------KDEDQDEDKDEDG 612
+ +D D EG D + E+E+EF +DED+DE+++E G
Sbjct: 214 EDEDEDVEGDDDKDEVSEEEEEFGLDKDEDDEDEDEDEEEEESG 257
Score = 29.6 bits (65), Expect = 8.5
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 17/58 (29%)
Query: 570 GMGSSPPKSKDMDNEGRDKAEIEDED-------------EDEF---KDEDQDEDKDED 611
G +++D + E D+ E EDED E+EF KDED DED+DED
Sbjct: 194 GEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKDEVSEEEEEFGLDKDED-DEDEDED 250
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 36.2 bits (82), Expect = 0.091
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 579 KDMDNEGRDKAEIEDED-EDEFKDEDQDEDKDEDG 612
++ D EG D+ + E+ED E+E DE++DED+D +G
Sbjct: 188 EEEDEEGEDEKDXENEDGEEEELDEEEDEDEDVEG 222
Score = 33.1 bits (74), Expect = 0.77
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 13/46 (28%)
Query: 579 KDMDNEGRDKAEI---EDEDEDEFKDEDQDE----------DKDED 611
KD +NE ++ E+ EDEDED D+D+DE DKDED
Sbjct: 198 KDXENEDGEEEELDEEEDEDEDVEGDDDKDEVSEEEEEFGLDKDED 243
Score = 32.3 bits (72), Expect = 1.3
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 8/44 (18%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEF--------KDEDQDEDKDEDG 612
+ +D D EG D + E+E+EF +DED+DE+++E G
Sbjct: 214 EDEDEDVEGDDDKDEVSEEEEEFGLDKDEDDEDEDEDEEEEESG 257
Score = 29.6 bits (65), Expect = 8.5
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 17/58 (29%)
Query: 570 GMGSSPPKSKDMDNEGRDKAEIEDED-------------EDEF---KDEDQDEDKDED 611
G +++D + E D+ E EDED E+EF KDED DED+DED
Sbjct: 194 GEDEKDXENEDGEEEELDEEEDEDEDVEGDDDKDEVSEEEEEFGLDKDED-DEDEDED 250
>gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens]
Length = 337
Score = 36.2 bits (82), Expect = 0.091
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 576 PKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
P +D G +E EDEDE+E D+D++EDK++DG
Sbjct: 229 PLVLQVDGTGDTSSE-EDEDEEEDYDDDEEEDKEKDG 264
>gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens]
Length = 376
Score = 36.2 bits (82), Expect = 0.091
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 576 PKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
P +D G +E EDEDE+E D+D++EDK++DG
Sbjct: 268 PLVLQVDGTGDTSSE-EDEDEEEDYDDDEEEDKEKDG 303
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 36.2 bits (82), Expect = 0.091
Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 503 EESKRARQASRL-STSHCSTETPSVQQEPATHTAQDQATEPCRSLYTNLPASRQLSPLEP 561
EE + ++A RL + C + ++ Q A ++ Y + P SR ++
Sbjct: 1000 EEREAEKEAERLMEQASCWEKEEQEILSTRANSRQSPAKVQSKNKYLHSPESRPVTGERG 1059
Query: 562 KLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKD 609
+L + SS + ++ D E ++ E E+EDE+E ++E+++E+++
Sbjct: 1060 QLLELS---KESSEEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEE 1104
Score = 33.5 bits (75), Expect = 0.59
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 499 LRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQATE------PCRSLYTNLPA 552
L K ++K + +L+ + ETP E T Q + +E P R
Sbjct: 1256 LSKWRQNKERKTGFKLNL-YTPPETPMEPDEQVTVEEQKETSEGKTSPSPIRIEEEVKET 1314
Query: 553 SRQLSPLEPKLYMSACTGMG-SSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
L P E C + ++ P K D+ + + E E+E+E+E ++E+++ +++E
Sbjct: 1315 GEALLPQEENRREETCAPVSPNTSPGEKPEDDLIKPEEEEEEEEEEEEEEEEEEGEEEEG 1374
Query: 612 G 612
G
Sbjct: 1375 G 1375
Score = 31.2 bits (69), Expect = 2.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 570 GMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
G S + ++ E D A ++D +E+E +DE+ ++D D
Sbjct: 1384 GAKSQEKEEPEISTEKEDSARLDDHEEEEEEDEEPSHNEDHD 1425
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 36.2 bits (82), Expect = 0.091
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 571 MGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+GS ++ + GR + + ++DE +DED++ED+DED
Sbjct: 249 IGSDEESENEITSVGRASGDDDGSEDDEEEDEDEEEDEDED 289
Score = 35.8 bits (81), Expect = 0.12
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 582 DNEGRDKAEIEDEDEDEFKDED-QDEDKDEDG 612
D++G + E EDEDE+E +DED +D+DK + G
Sbjct: 268 DDDGSEDDEEEDEDEEEDEDEDSEDDDKSDSG 299
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 35.8 bits (81), Expect = 0.12
Identities = 15/33 (45%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 579 KDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+D D + D+ + +DED+DE +D D+DED DE+
Sbjct: 349 EDNDEDDNDEDD-DDEDDDEAEDNDEDEDDDEE 380
Score = 35.0 bits (79), Expect = 0.20
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 580 DMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
D D E D+ + +++D+DE DE +D D+DED
Sbjct: 345 DDDEEDNDEDDNDEDDDDEDDDEAEDNDEDED 376
Score = 33.9 bits (76), Expect = 0.45
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 580 DMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
D ++ D + +D+DED+ + ED DED+D+D
Sbjct: 347 DEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDD 378
Score = 32.7 bits (73), Expect = 1.0
Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 26/192 (13%)
Query: 430 RLYEELADFLTQQAASL------VIRKYEFEKDLSKQLGFFSFPITH--VLRD--LSLGL 479
RL +E F QQ + V+R+ + + Q +F I H +++ L L
Sbjct: 199 RLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKSEYLQYSL 258
Query: 480 KKVKGSRIHLSSETHRSCLLRKLEESKRARQASRLSTSHCSTETPSVQQEPATHTAQDQA 539
K+K I+L + R + P ++ A+ A
Sbjct: 259 TKIKQRHIYLE---------------RLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLA 303
Query: 540 TEPCRSLYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEF 599
C S+ + L+ E + S +S + +D D+E + + DED+D+
Sbjct: 304 RTACTSVEEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEEDNDEDDNDEDDDD- 362
Query: 600 KDEDQDEDKDED 611
+D+D+ ED DED
Sbjct: 363 EDDDEAEDNDED 374
>gi|14670268 RD RNA-binding protein [Homo sapiens]
Length = 380
Score = 35.8 bits (81), Expect = 0.12
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 573 SSPPKSKDMD-----NEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+SPP+S+ D N RD+ D D D +D ++D D+D D
Sbjct: 180 ASPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRD 223
Score = 34.3 bits (77), Expect = 0.35
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 21/109 (19%)
Query: 524 PSVQQEPATHTAQDQATEPCR-----SLYTN-LPASRQLSPLEPKLYMSACTGMGSSPPK 577
P+ Q + +A D E R SLY + + +S +L L P + G G PP+
Sbjct: 105 PTFQPFQRSISADDDLQESSRRPQRKSLYESFVSSSDRLRELGPDGEEAEGPGAGDGPPR 164
Query: 578 SKDMDNE---------------GRDKAEIEDEDEDEFKDEDQDEDKDED 611
S D E RD++ + D D ++ D+D D+D D
Sbjct: 165 SFDWGYEERSGAHSSASPPRSRSRDRSHERNRDRDRDRERDRDRDRDRD 213
Score = 30.8 bits (68), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
+ +D D E RD+ D D D +D D++ D+D D
Sbjct: 208 RDRDRDRE-RDRDRDRDRDRDRERDRDRERDRDRD 241
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 35.8 bits (81), Expect = 0.12
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 572 GSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
G + ++ + G + E+E+E+E +DED+DED+DE G
Sbjct: 166 GDEDDEEEEENEAGPPEGYEEEEEEEEEEDEDEDEDEDEAG 206
Score = 34.7 bits (78), Expect = 0.26
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 548 TNLPASRQ--LSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIE------------D 593
TNL R+ L+ Y+ + P S++ D+E D+ + E +
Sbjct: 126 TNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDEEEEENEAGPPEGYE 185
Query: 594 EDEDEFKDEDQDEDKDED 611
E+E+E ++ED+DED+DED
Sbjct: 186 EEEEEEEEEDEDEDEDED 203
Score = 33.1 bits (74), Expect = 0.77
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 584 EGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
EG ++ E E+E+EDE +DED+DE E G
Sbjct: 182 EGYEEEEEEEEEEDEDEDEDEDEAGSELG 210
Score = 30.0 bits (66), Expect = 6.5
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 582 DNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
DNE D E +DED DE +D++E+++E G
Sbjct: 152 DNEAPDSEEEDDEDGDE---DDEEEEENEAG 179
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 35.8 bits (81), Expect = 0.12
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 572 GSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
G + ++ + G + E+E+E+E +DED+DED+DE G
Sbjct: 118 GDEDDEEEEENEAGPPEGYEEEEEEEEEEDEDEDEDEDEAG 158
Score = 34.7 bits (78), Expect = 0.26
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 548 TNLPASRQ--LSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIE------------D 593
TNL R+ L+ Y+ + P S++ D+E D+ + E +
Sbjct: 78 TNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDEEEEENEAGPPEGYE 137
Query: 594 EDEDEFKDEDQDEDKDED 611
E+E+E ++ED+DED+DED
Sbjct: 138 EEEEEEEEEDEDEDEDED 155
Score = 33.1 bits (74), Expect = 0.77
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 584 EGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
EG ++ E E+E+EDE +DED+DE E G
Sbjct: 134 EGYEEEEEEEEEEDEDEDEDEDEAGSELG 162
Score = 30.0 bits (66), Expect = 6.5
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 582 DNEGRDKAEIEDEDEDEFKDEDQDEDKDEDG 612
DNE D E +DED DE +D++E+++E G
Sbjct: 104 DNEAPDSEEEDDEDGDE---DDEEEEENEAG 131
>gi|168823443 RAD54-like 2 [Homo sapiens]
Length = 1467
Score = 35.8 bits (81), Expect = 0.12
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Query: 262 EQEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRTLNFLA---DHRLFPALQSVVS 318
E+EP + K IK + QL L P + +EP + L DH+L A +
Sbjct: 911 EKEPAPQVSLNVKGIKESVLQLACLKYP-HLITKEPFEHESLLLNRKDHKLTKAEKKAAK 969
Query: 319 QAVDKLRGAHCRDGRP----LFPTSLEPTSDLPPLGSEPAKPTNGG--QPYASPRPTVSS 372
++ ++ + RP +P S + + +P +PT G +P AS RP S+
Sbjct: 970 KSYEEDKRTSVPYTRPSYAQYYPASDQSLTSIPAFSQRNWQPTLKGDEKPVASVRPVQST 1029
Query: 373 PKMLQRKRKDRGGSPSMSSA 392
P + + GGS S +S+
Sbjct: 1030 PIPMMPRHVPLGGSVSSASS 1049
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 35.8 bits (81), Expect = 0.12
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 546 LYTNLPASRQLSPLEPKLYMSACTGMGSSPPKSKDMDNEGRDKAEIEDEDEDEFKDEDQD 605
L N+ +S LE + A T SSP S + D+ + E+E+E+E ++E+++
Sbjct: 4 LLPNMAEFDTISELEEEEEEEAATS-SSSPSSSSSVSGPDDDEEDEEEEEEEEEEEEEEE 62
Query: 606 EDKDED 611
E+++E+
Sbjct: 63 EEEEEE 68
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 35.4 bits (80), Expect = 0.16
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 183 SLPPVRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLSWF 242
S+PP +K L+ +L++L+ + LS+ + R S L D + +QW E + W
Sbjct: 3303 SVPPGEEKRTLQN---QLVELKNHWEELSKKTADRQSRLKDCMQKAQKYQWHVEDLVPWI 3359
Query: 243 SGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLD 287
S + +P E + R + E++ S LE L+
Sbjct: 3360 EDCKAKMSELRVTLDPVQLESS-LLRSKAMLNEVEKRRSLLEILN 3403
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 35.4 bits (80), Expect = 0.16
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 183 SLPPVRDKLLLEKNLKRLLQLEREGKGLSQSCSQRDSLLWDSLGSQTSFQWTQEQPLSWF 242
S+PP +K L+ +L++L+ + LS+ + R S L D + +QW E + W
Sbjct: 2801 SVPPGEEKRTLQN---QLVELKNHWEELSKKTADRQSRLKDCMQKAQKYQWHVEDLVPWI 2857
Query: 243 SGLLGSSSGVPEASEPRPGEQEPIFRKREFNKEIKSLLSQLESLD 287
S + +P E + R + E++ S LE L+
Sbjct: 2858 EDCKAKMSELRVTLDPVQLESS-LLRSKAMLNEVEKRRSLLEILN 2901
>gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens]
Length = 147
Score = 35.4 bits (80), Expect = 0.16
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 577 KSKDMDNEGRDKAEIEDEDEDEFKDEDQDEDKDED 611
K K D+E +DK+ ED DEDE + E+++++++E+
Sbjct: 110 KDKKTDSEEQDKSRDEDNDEDEERLEEEEQNEEEE 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,138,660
Number of Sequences: 37866
Number of extensions: 1436095
Number of successful extensions: 11379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 8521
Number of HSP's gapped (non-prelim): 1887
length of query: 613
length of database: 18,247,518
effective HSP length: 108
effective length of query: 505
effective length of database: 14,157,990
effective search space: 7149784950
effective search space used: 7149784950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.