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Search of human proteins with 29294629
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29294629 PTPRF interacting protein binding protein 1 isoform
2 [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29294629 PTPRF interacting protein binding protein 1 isoform ... 340 5e-94
gi|29294627 PTPRF interacting protein binding protein 1 isoform ... 311 2e-85
gi|170784854 PTPRF interacting protein, binding protein 2 (lipri... 159 8e-40
gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 42 3e-04
gi|5032013 kinesin family member 20A [Homo sapiens] 38 0.004
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 35 0.024
gi|223671870 inhibitor of kappa light polypeptide gene enhancer ... 34 0.069
gi|4504631 inhibitor of kappa light polypeptide gene enhancer in... 34 0.069
gi|153792133 inhibitor of kappa light polypeptide gene enhancer ... 34 0.069
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 34 0.069
gi|49258196 syntaxin 19 [Homo sapiens] 34 0.069
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 33 0.091
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 33 0.091
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 33 0.091
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 33 0.12
gi|5453726 leucine rich repeat (in FLII) interacting protein 2 i... 33 0.12
gi|65301130 kazrin isoform B [Homo sapiens] 33 0.12
gi|118498362 kinectin 1 isoform b [Homo sapiens] 33 0.15
gi|118498356 kinectin 1 isoform a [Homo sapiens] 33 0.15
gi|118498368 kinectin 1 isoform c [Homo sapiens] 33 0.15
gi|33620775 kinectin 1 isoform a [Homo sapiens] 33 0.15
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 33 0.15
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 33 0.15
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 33 0.15
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 33 0.15
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 33 0.15
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 33 0.15
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 33 0.15
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 33 0.15
gi|27436948 lamin A/C isoform 3 [Homo sapiens] 32 0.20
>gi|29294629 PTPRF interacting protein binding protein 1 isoform 2
[Homo sapiens]
Length = 170
Score = 340 bits (871), Expect = 5e-94
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLE 60
MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLE
Sbjct: 1 MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLE 60
Query: 61 MMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQV 120
MMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQV
Sbjct: 61 MMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQV 120
Query: 121 SVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAEARTKMGFPC 170
SVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAEARTKMGFPC
Sbjct: 121 SVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAEARTKMGFPC 170
>gi|29294627 PTPRF interacting protein binding protein 1 isoform 1
[Homo sapiens]
Length = 1005
Score = 311 bits (797), Expect = 2e-85
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLE 60
MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLE
Sbjct: 1 MMSDASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLE 60
Query: 61 MMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQV 120
MMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQV
Sbjct: 61 MMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQV 120
Query: 121 SVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQ 157
SVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQ
Sbjct: 121 SVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQ 157
>gi|170784854 PTPRF interacting protein, binding protein 2 (liprin
beta 2) [Homo sapiens]
Length = 876
Score = 159 bits (403), Expect = 8e-40
Identities = 95/163 (58%), Positives = 112/163 (68%), Gaps = 7/163 (4%)
Query: 1 MMSDASDMLAAALEQMDGIIAGSKA-LEYSNGIFD--CQSPTSPFMGSLRALHLVEDLRG 57
M SDAS L AALEQMDGIIAG+K + S+G + SP S +M LHL+EDLR
Sbjct: 1 MASDASHALEAALEQMDGIIAGTKTGADLSDGTCEPGLASPAS-YMNPFPVLHLIEDLRL 59
Query: 58 LLEMMET-DEKEGLRCQIPDSTAETLVEWLQSQMT--NGHLPGNGDVYQERLARLENDKE 114
LEM+E E+ L QIP TA + EW + ++ N H + + YQERLARLE DKE
Sbjct: 60 ALEMLELPQERAALLSQIPGPTAAYIKEWFEESLSQVNHHSAASNETYQERLARLEGDKE 119
Query: 115 SLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQ 157
SL+LQVSVLTDQVEAQGEKIRDLE CLE H+ K+NA EEMLQQ
Sbjct: 120 SLILQVSVLTDQVEAQGEKIRDLEVCLEGHQVKLNAAEEMLQQ 162
>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
Length = 976
Score = 42.0 bits (97), Expect = 3e-04
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 54 DLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDK 113
DL +E M T +E LR Q +S E + + HL ++ + NDK
Sbjct: 213 DLNNNIEKMITAFEE-LRVQAENSRLEMHFKLKEDYEKIQHL-------EQEYKKEINDK 264
Query: 114 ESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEE 153
E QVS+L Q+ + K++DL F LEE R+KVN EE
Sbjct: 265 EK---QVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEE 301
>gi|5032013 kinesin family member 20A [Homo sapiens]
Length = 890
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 44 GSLRALHLVEDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQS--QMTNGHLPGNGDV 101
G L +VE ++ LL + E EK L + D +VE +Q Q + HL ++
Sbjct: 559 GKEELLQVVEAMKTLL-LKERQEKLQLEMHLRDEICNEMVEQMQQREQWCSEHLDTQKEL 617
Query: 102 YQERLA-RLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEE 153
+E +L KESL S ++++ + EKI +LE L+E R++ A ++
Sbjct: 618 LEEMYEEKLNILKESLT---SFYQEEIQERDEKIEELEALLQEARQQSVAHQQ 667
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 35.4 bits (80), Expect = 0.024
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 18/173 (10%)
Query: 5 ASDMLAAALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRALHLVEDLRGLLEMM-E 63
+SD A E++ + A +A+ +S + + + + +L + L E +LE+ E
Sbjct: 1033 SSDSSLALHERIQALEAELQAVSHSKTLLEKELQE---VIALTSQELEESREKVLELEDE 1089
Query: 64 TDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGD----------VYQERLARLENDK 113
E G R +I L+ + G L G G + + LA+ E D
Sbjct: 1090 LQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADL 1149
Query: 114 ESLVLQVSVLTDQVEAQGEKIRDL----EFCLEEHREKVNATEEMLQQVCAEA 162
L LQV + + E + +++ L + LE+ +EKVN+ +E + EA
Sbjct: 1150 VQLNLQVQAVLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEA 1202
>gi|223671870 inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma isoform b [Homo sapiens]
Length = 487
Score = 33.9 bits (76), Expect = 0.069
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 47 RALHLVEDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGH-----LPGNGDV 101
+AL VE L+ + M D K ++ Q+ E ++ QS++ L G
Sbjct: 188 QALREVEHLKRCQQQMAED-KASVKAQVTSLLGE--LQESQSRLEAATKECQALEGRARA 244
Query: 102 YQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQV 158
E+ +LE+++E+L Q SV DQ+ QG+ + E L R+ + + L Q+
Sbjct: 245 ASEQARQLESEREALQQQHSVQVDQLRMQGQSV---EAALRMERQAASEEKRKLAQL 298
>gi|4504631 inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma isoform a [Homo sapiens]
Length = 419
Score = 33.9 bits (76), Expect = 0.069
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 47 RALHLVEDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGH-----LPGNGDV 101
+AL VE L+ + M D K ++ Q+ E ++ QS++ L G
Sbjct: 120 QALREVEHLKRCQQQMAED-KASVKAQVTSLLGE--LQESQSRLEAATKECQALEGRARA 176
Query: 102 YQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQV 158
E+ +LE+++E+L Q SV DQ+ QG+ + E L R+ + + L Q+
Sbjct: 177 ASEQARQLESEREALQQQHSVQVDQLRMQGQSV---EAALRMERQAASEEKRKLAQL 230
>gi|153792133 inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase gamma isoform a [Homo sapiens]
Length = 419
Score = 33.9 bits (76), Expect = 0.069
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 47 RALHLVEDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGH-----LPGNGDV 101
+AL VE L+ + M D K ++ Q+ E ++ QS++ L G
Sbjct: 120 QALREVEHLKRCQQQMAED-KASVKAQVTSLLGE--LQESQSRLEAATKECQALEGRARA 176
Query: 102 YQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQV 158
E+ +LE+++E+L Q SV DQ+ QG+ + E L R+ + + L Q+
Sbjct: 177 ASEQARQLESEREALQQQHSVQVDQLRMQGQSV---EAALRMERQAASEEKRKLAQL 230
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 33.9 bits (76), Expect = 0.069
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 66 EKEGLRCQIPDSTAETLVEWLQSQMT-NGHLPGNGDVYQERLARLENDKESLVLQVSVLT 124
E E +R + S ++ L +W + + + Q ++ +LE D E ++S L
Sbjct: 228 ENEAIRQAMQQSVSQALWQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLK 287
Query: 125 DQVEAQGEKIRDLEFCLEEHRE---KVNATEEMLQQVCAEARTKM 166
+ E+I+DL+ L+E R+ ++ T + L + A A+ +M
Sbjct: 288 KYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRM 332
>gi|49258196 syntaxin 19 [Homo sapiens]
Length = 294
Score = 33.9 bits (76), Expect = 0.069
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 104 ERLARLEN---DKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEE 153
+ L LEN D L +Q+S+L VE QGE I ++E + +E VN T+E
Sbjct: 217 KELVNLENQIKDLRDLFIQISLL---VEEQGESINNIEMTVNSTKEYVNNTKE 266
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 33.5 bits (75), Expect = 0.091
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 100 DVYQERLARLENDKESLVLQVSVLTDQVEA---QGEKIRDLEFCLEEHREKVNATEEMLQ 156
++ QE+ ++ +E + Q + +Q E Q EKIR+ E + E EK+ EEM+Q
Sbjct: 640 EMTQEQEEKMGEQEEKMCEQEEKMQEQEETMWRQEEKIREQEKKIREQEEKIREQEEMMQ 699
Query: 157 Q 157
+
Sbjct: 700 E 700
Score = 30.0 bits (66), Expect = 1.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 103 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAEA 162
+E++ E ++ ++ +++ Q EKI++ E + E EK+ EEM Q E
Sbjct: 590 EEKIREQEEKRQEQEEKMWKQEEKIREQEEKIQEQEEKIREQEEKIREQEEMTQ----EQ 645
Query: 163 RTKMG 167
KMG
Sbjct: 646 EEKMG 650
Score = 28.5 bits (62), Expect = 2.9
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 86 LQSQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHR 145
LQ+Q+ L + QE + +K + ++++ Q EKIR+ E + E
Sbjct: 281 LQAQVEENELWNRLNQQQEEKMWRQEEK------IQEWEEKIQEQEEKIREQEEKIREQE 334
Query: 146 EKVNATEEML 155
EK+ EEM+
Sbjct: 335 EKMRRQEEMM 344
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 33.5 bits (75), Expect = 0.091
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 100 DVYQERLARLENDKESLVLQVSVLTDQVEA---QGEKIRDLEFCLEEHREKVNATEEMLQ 156
++ QE+ ++ +E + Q + +Q E Q EKIR+ E + E EK+ EEM+Q
Sbjct: 404 EMMQEQEEKMGEQEEKMWEQEEEMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQ 463
Query: 157 QVCAEARTKMG 167
E KMG
Sbjct: 464 ----EQEEKMG 470
Score = 31.2 bits (69), Expect = 0.45
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 100 DVYQERLARLENDKESLVLQVSVLTDQVEA---QGEKIRDLEFCLEEHREKVNATEEMLQ 156
++ QE+ ++ + + Q + + +Q E Q EKIR+ E + E EK+ EEM+Q
Sbjct: 460 EMMQEQEEKMGEQEGKMCEQEAKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQ 519
Query: 157 Q 157
+
Sbjct: 520 E 520
Score = 28.1 bits (61), Expect = 3.8
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 104 ERLARLENDKESLVLQVSVLTDQ---VEAQGEKIRDLEFCLEEHREKVNATEEML 155
E+ A+++ +E + Q + +Q + Q EKIR+ E ++E EK+ EE +
Sbjct: 478 EQEAKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKM 532
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 33.5 bits (75), Expect = 0.091
Identities = 21/110 (19%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 47 RALHLVEDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQ--E 104
R L + +DL G + E K+ ++ A +E +Q+ G++ + E
Sbjct: 637 RRLAIFKDLVGKCDTREEAAKDICATKVETEEATACLELKFNQIKAELAKTKGELIKTKE 696
Query: 105 RLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEM 154
L + EN+ +SL+ ++ ++ Q ++I++L +++ + +N + +
Sbjct: 697 ELKKRENESDSLIQELETSNKKIITQNQRIKELINIIDQKEDTINEFQNL 746
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 33.1 bits (74), Expect = 0.12
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 100 DVYQERLARLENDKESLVLQVSVLTDQVEA---QGEKIRDLEFCLEEHREKVNATEEMLQ 156
++ QE+ ++ +E + Q + +Q E Q EKIR+ E + E EK+ EEM+Q
Sbjct: 606 EMTQEQEEKMGEQEEKMCEQEEKMQEQEEKMRRQEEKIREQEKKIREQEEKIREQEEMMQ 665
Query: 157 Q 157
+
Sbjct: 666 E 666
Score = 31.6 bits (70), Expect = 0.34
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 103 QERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAEA 162
+E++ R E ++ ++V Q EKIR+ E + E EK+ EEM Q E
Sbjct: 556 EEKMWRQEEKMHDQEEKIREQEEKVWRQEEKIREQEEKIREQEEKIREQEEMTQ----EQ 611
Query: 163 RTKMG 167
KMG
Sbjct: 612 EEKMG 616
Score = 28.5 bits (62), Expect = 2.9
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 86 LQSQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHR 145
LQ+Q+ L + QE + +K + ++++ Q EKIR+ E + E
Sbjct: 342 LQAQVEENELWNRLNQQQEEKMWRQEEK------IQEWEEKIQEQEEKIREQEEKIREQE 395
Query: 146 EKVNATEEML 155
EK+ EEM+
Sbjct: 396 EKMRRQEEMM 405
>gi|5453726 leucine rich repeat (in FLII) interacting protein 2
isoform 1 [Homo sapiens]
Length = 721
Score = 33.1 bits (74), Expect = 0.12
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 51 LVEDLRGLLEMMETDEKEGLRCQIPDST------------AETLVEWLQSQMTNGHLPGN 98
L E+L L E ++T EK GL IPD T A T+V +Q+ G
Sbjct: 507 LREELADLQETVKTGEKHGLVI-IPDGTPNGDVSHEPVAGAITVVSQEAAQVLESAGEGP 565
Query: 99 GDVYQERLARLENDKESLVLQVSVLTDQVEAQGEK 133
DV RL +L +KE L+ Q+ L Q+E + +K
Sbjct: 566 LDV---RLRKLAGEKEELLSQIRKLKLQLEEERQK 597
>gi|65301130 kazrin isoform B [Homo sapiens]
Length = 415
Score = 33.1 bits (74), Expect = 0.12
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 34 DCQSPTSPFMGSLRALHLVEDLRGLLEMMETD--EKEGLRCQIPDSTAETLVEWLQSQMT 91
DC P R V LR + EM+ D E +G + S E V+ Q +
Sbjct: 65 DCSQPVLLREEVSRLQEEVHLLRQMKEMLAKDLEESQGGKSSEVLSATELRVQLAQKEQE 124
Query: 92 NGHLPGNGDVYQERLARLENDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREK 147
+ RL+ +K LV Q+ L +E++ E++RD E+HR++
Sbjct: 125 LARAKEALQAMKADRKRLKGEKTDLVSQMQQLYATLESREEQLRDFIRNYEQHRKE 180
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 32.7 bits (73), Expect = 0.15
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 66 EKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTD 125
EK + D L E LQ +++N E L + ++L +V L
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNK---------MEEFKILNDQNKALKSEVQKLQT 719
Query: 126 QVEAQGEK--IRDLEFCLEEHREKVNATEEMLQQVCAEARTK 165
V Q K + +E C++E EK+ EE+L+ + TK
Sbjct: 720 LVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATK 761
Score = 27.3 bits (59), Expect = 6.5
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 11 AALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRA--LHLVEDLR---GLLEMMETD 65
A L+Q +GI+ + SN +S S + LR LV +L G L+ E
Sbjct: 420 AHLKQENGILRDA----VSNTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQ 475
Query: 66 EKEG------LRCQIPDSTAETLVEWLQSQM---TNGHLPGNGDVYQERLARLENDKESL 116
+K L+ Q+ + AE E +QS + T H D+ + +A+ EN+ +SL
Sbjct: 476 KKNAEQAATQLKVQLQE--AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK-ENEVQSL 532
Query: 117 VLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQV 158
S LTD + ++ + + L +E +++VN E + QV
Sbjct: 533 H---SKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQV 571
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.7 bits (73), Expect = 0.15
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 66 EKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTD 125
EK + D L E LQ +++N E L + ++L +V L
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNK---------MEEFKILNDQNKALKSEVQKLQT 719
Query: 126 QVEAQGEK--IRDLEFCLEEHREKVNATEEMLQQVCAEARTK 165
V Q K + +E C++E EK+ EE+L+ + TK
Sbjct: 720 LVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATK 761
Score = 27.3 bits (59), Expect = 6.5
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 11 AALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRA--LHLVEDLR---GLLEMMETD 65
A L+Q +GI+ + SN +S S + LR LV +L G L+ E
Sbjct: 420 AHLKQENGILRDA----VSNTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQ 475
Query: 66 EKEG------LRCQIPDSTAETLVEWLQSQM---TNGHLPGNGDVYQERLARLENDKESL 116
+K L+ Q+ + AE E +QS + T H D+ + +A+ EN+ +SL
Sbjct: 476 KKNAEQAATQLKVQLQE--AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK-ENEVQSL 532
Query: 117 VLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQV 158
S LTD + ++ + + L +E +++VN E + QV
Sbjct: 533 H---SKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQV 571
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 32.7 bits (73), Expect = 0.15
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 66 EKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTD 125
EK + D L E LQ +++N E L + ++L +V L
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNK---------MEEFKILNDQNKALKSEVQKLQT 719
Query: 126 QVEAQGEK--IRDLEFCLEEHREKVNATEEMLQQVCAEARTK 165
V Q K + +E C++E EK+ EE+L+ + TK
Sbjct: 720 LVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATK 761
Score = 27.3 bits (59), Expect = 6.5
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 11 AALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRA--LHLVEDLR---GLLEMMETD 65
A L+Q +GI+ + SN +S S + LR LV +L G L+ E
Sbjct: 420 AHLKQENGILRDA----VSNTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQ 475
Query: 66 EKEG------LRCQIPDSTAETLVEWLQSQM---TNGHLPGNGDVYQERLARLENDKESL 116
+K L+ Q+ + AE E +QS + T H D+ + +A+ EN+ +SL
Sbjct: 476 KKNAEQAATQLKVQLQE--AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK-ENEVQSL 532
Query: 117 VLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQV 158
S LTD + ++ + + L +E +++VN E + QV
Sbjct: 533 H---SKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQV 571
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.7 bits (73), Expect = 0.15
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 66 EKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVLQVSVLTD 125
EK + D L E LQ +++N E L + ++L +V L
Sbjct: 669 EKMQQSVYVKDDKIRLLEEQLQHEISNK---------MEEFKILNDQNKALKSEVQKLQT 719
Query: 126 QVEAQGEK--IRDLEFCLEEHREKVNATEEMLQQVCAEARTK 165
V Q K + +E C++E EK+ EE+L+ + TK
Sbjct: 720 LVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATK 761
Score = 27.3 bits (59), Expect = 6.5
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Query: 11 AALEQMDGIIAGSKALEYSNGIFDCQSPTSPFMGSLRA--LHLVEDLR---GLLEMMETD 65
A L+Q +GI+ + SN +S S + LR LV +L G L+ E
Sbjct: 420 AHLKQENGILRDA----VSNTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQ 475
Query: 66 EKEG------LRCQIPDSTAETLVEWLQSQM---TNGHLPGNGDVYQERLARLENDKESL 116
+K L+ Q+ + AE E +QS + T H D+ + +A+ EN+ +SL
Sbjct: 476 KKNAEQAATQLKVQLQE--AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK-ENEVQSL 532
Query: 117 VLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQV 158
S LTD + ++ + + L +E +++VN E + QV
Sbjct: 533 H---SKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQV 571
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 53 EDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLEND 112
EDL + E KE ++ + + E LQ Q ++ QE+ RL+ D
Sbjct: 2299 EDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQK---------ELAQEQARRLQED 2349
Query: 113 KESLVLQVSVLTD--QVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAE 161
KE + Q++ T Q + E+ R LE E R K+ E Q AE
Sbjct: 2350 KEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAE 2400
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 104 ERLARLE---NDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCA 160
E+L R E +K +LV + + Q + E++R+ LE +EK+ ++LQ
Sbjct: 2415 EKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSE 2474
Query: 161 EART 164
E +T
Sbjct: 2475 EMQT 2478
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 53 EDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLEND 112
EDL + E KE ++ + + E LQ Q ++ QE+ RL+ D
Sbjct: 2303 EDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQK---------ELAQEQARRLQED 2353
Query: 113 KESLVLQVSVLTD--QVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAE 161
KE + Q++ T Q + E+ R LE E R K+ E Q AE
Sbjct: 2354 KEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAE 2404
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 104 ERLARLE---NDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCA 160
E+L R E +K +LV + + Q + E++R+ LE +EK+ ++LQ
Sbjct: 2419 EKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSE 2478
Query: 161 EART 164
E +T
Sbjct: 2479 EMQT 2482
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 53 EDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLEND 112
EDL + E KE ++ + + E LQ Q ++ QE+ RL+ D
Sbjct: 2299 EDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQK---------ELAQEQARRLQED 2349
Query: 113 KESLVLQVSVLTD--QVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAE 161
KE + Q++ T Q + E+ R LE E R K+ E Q AE
Sbjct: 2350 KEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAE 2400
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 104 ERLARLE---NDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCA 160
E+L R E +K +LV + + Q + E++R+ LE +EK+ ++LQ
Sbjct: 2415 EKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSE 2474
Query: 161 EART 164
E +T
Sbjct: 2475 EMQT 2478
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 53 EDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLEND 112
EDL + E KE ++ + + E LQ Q ++ QE+ RL+ D
Sbjct: 2267 EDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQK---------ELAQEQARRLQED 2317
Query: 113 KESLVLQVSVLTD--QVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAE 161
KE + Q++ T Q + E+ R LE E R K+ E Q AE
Sbjct: 2318 KEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAE 2368
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 104 ERLARLE---NDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCA 160
E+L R E +K +LV + + Q + E++R+ LE +EK+ ++LQ
Sbjct: 2383 EKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSE 2442
Query: 161 EART 164
E +T
Sbjct: 2443 EMQT 2446
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 53 EDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLEND 112
EDL + E KE ++ + + E LQ Q ++ QE+ RL+ D
Sbjct: 2436 EDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQK---------ELAQEQARRLQED 2486
Query: 113 KESLVLQVSVLTD--QVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAE 161
KE + Q++ T Q + E+ R LE E R K+ E Q AE
Sbjct: 2487 KEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAE 2537
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 104 ERLARLE---NDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCA 160
E+L R E +K +LV + + Q + E++R+ LE +EK+ ++LQ
Sbjct: 2552 EKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSE 2611
Query: 161 EART 164
E +T
Sbjct: 2612 EMQT 2615
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 53 EDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLEND 112
EDL + E KE ++ + + E LQ Q ++ QE+ RL+ D
Sbjct: 2277 EDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQK---------ELAQEQARRLQED 2327
Query: 113 KESLVLQVSVLTD--QVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAE 161
KE + Q++ T Q + E+ R LE E R K+ E Q AE
Sbjct: 2328 KEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAE 2378
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 104 ERLARLE---NDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCA 160
E+L R E +K +LV + + Q + E++R+ LE +EK+ ++LQ
Sbjct: 2393 EKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSE 2452
Query: 161 EART 164
E +T
Sbjct: 2453 EMQT 2456
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 53 EDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLEND 112
EDL + E KE ++ + + E LQ Q ++ QE+ RL+ D
Sbjct: 2285 EDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQK---------ELAQEQARRLQED 2335
Query: 113 KESLVLQVSVLTD--QVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAE 161
KE + Q++ T Q + E+ R LE E R K+ E Q AE
Sbjct: 2336 KEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAE 2386
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 104 ERLARLE---NDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCA 160
E+L R E +K +LV + + Q + E++R+ LE +EK+ ++LQ
Sbjct: 2401 EKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSE 2460
Query: 161 EART 164
E +T
Sbjct: 2461 EMQT 2464
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 32.7 bits (73), Expect = 0.15
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 53 EDLRGLLEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLEND 112
EDL + E KE ++ + + E LQ Q ++ QE+ RL+ D
Sbjct: 2326 EDLAQQRALAEKMLKEKMQAVQEATRLKAEAELLQQQK---------ELAQEQARRLQED 2376
Query: 113 KESLVLQVSVLTD--QVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAE 161
KE + Q++ T Q + E+ R LE E R K+ E Q AE
Sbjct: 2377 KEQMAQQLAEETQGFQRTLEAERQRQLEMSAEAERLKLRVAEMSRAQARAE 2427
Score = 27.7 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 104 ERLARLE---NDKESLVLQVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCA 160
E+L R E +K +LV + + Q + E++R+ LE +EK+ ++LQ
Sbjct: 2442 EKLHRTELATQEKVTLVQTLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSE 2501
Query: 161 EART 164
E +T
Sbjct: 2502 EMQT 2505
>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
Length = 634
Score = 32.3 bits (72), Expect = 0.20
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 59 LEMMETDEKEGLRCQIPDSTAETLVEWLQSQMTNGHLPGNGDVYQERLARLENDKESLVL 118
L D+ E + ++ + + L QS N +L G E L + +SL
Sbjct: 248 LRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAA---HEELQQSRIRIDSLSA 304
Query: 119 QVSVLTDQVEAQGEKIRDLEFCLEEHREKVNATEEMLQQVCAEARTKM 166
Q+S L Q+ A+ K+RDLE L R+ ++ AE R +M
Sbjct: 305 QLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARM 352
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,040,043
Number of Sequences: 37866
Number of extensions: 244266
Number of successful extensions: 1464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 380
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.