Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 28416949
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28416949 GTPase, IMAP family member 5 [Homo sapiens]
(307 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28416949 GTPase, IMAP family member 5 [Homo sapiens] 621 e-178
gi|28416431 GTPase, IMAP family member 2 [Homo sapiens] 222 3e-58
gi|18594498 GTPase, IMAP family member 1 [Homo sapiens] 209 2e-54
gi|56119214 GTPase, IMAP family member 6 [Homo sapiens] 189 2e-48
gi|23397516 GTPase, IMAP family member 7 [Homo sapiens] 189 2e-48
gi|8922873 GTPase, IMAP family member 4 [Homo sapiens] 179 3e-45
gi|28416956 GTPase, IMAP family member 8 [Homo sapiens] 164 1e-40
gi|24307899 Era-like 1 [Homo sapiens] 36 0.037
gi|239753874 PREDICTED: similar to hCG2036814 [Homo sapiens] 36 0.049
gi|239748437 PREDICTED: similar to hCG2036814 [Homo sapiens] 36 0.049
gi|239742371 PREDICTED: hypothetical protein XP_002342504 [Homo ... 36 0.049
gi|189011592 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 34 0.14
gi|189011586 amyotrophic lateral sclerosis 2 (juvenile) chromoso... 34 0.14
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 33 0.24
gi|148746195 trichohyalin [Homo sapiens] 30 2.1
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 30 2.1
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 30 2.1
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 30 2.1
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 30 2.1
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 30 2.1
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 30 2.1
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 30 2.1
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 30 2.1
gi|20544129 DEAH (Asp-Glu-Ala-His) box polypeptide 35 [Homo sapi... 30 2.1
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 30 2.1
gi|158937242 cytochrome P450, family 4, subfamily A, polypeptide... 30 3.5
gi|56549640 septin 2 [Homo sapiens] 29 4.6
gi|56549638 septin 2 [Homo sapiens] 29 4.6
gi|56549636 septin 2 [Homo sapiens] 29 4.6
gi|4758158 septin 2 [Homo sapiens] 29 4.6
>gi|28416949 GTPase, IMAP family member 5 [Homo sapiens]
Length = 307
Score = 621 bits (1602), Expect = e-178
Identities = 307/307 (100%), Positives = 307/307 (100%)
Query: 1 MGGFQRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQ 60
MGGFQRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQ
Sbjct: 1 MGGFQRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQ 60
Query: 61 SVTRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL 120
SVTRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL
Sbjct: 61 SVTRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL 120
Query: 121 GRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVREC 180
GRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVREC
Sbjct: 121 GRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVREC 180
Query: 181 ERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQE 240
ERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQE
Sbjct: 181 ERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQE 240
Query: 241 DYRQYQAKVEWQVEKHKQELRENESNWAYKALLRVKHLMLLHYEIFVFLLLCSILFFIIF 300
DYRQYQAKVEWQVEKHKQELRENESNWAYKALLRVKHLMLLHYEIFVFLLLCSILFFIIF
Sbjct: 241 DYRQYQAKVEWQVEKHKQELRENESNWAYKALLRVKHLMLLHYEIFVFLLLCSILFFIIF 300
Query: 301 LFIFHYI 307
LFIFHYI
Sbjct: 301 LFIFHYI 307
>gi|28416431 GTPase, IMAP family member 2 [Homo sapiens]
Length = 337
Score = 222 bits (566), Expect = 3e-58
Identities = 128/313 (40%), Positives = 183/313 (58%), Gaps = 23/313 (7%)
Query: 5 QRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTR 64
+ +G A+G+ A+ LRIILVGKTG GKSA GNSIL + FESKL +Q++T+
Sbjct: 5 EHSHWGPHAKGQC-----ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTK 59
Query: 65 TCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFT 124
TC G+W R+++++DTP +F + + LYK + CYLLSAPGPHVLLLV QLGR+T
Sbjct: 60 TCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT 119
Query: 125 AQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRY 184
+QD A ++VKE+FG AM H ++LFTHKEDL G +L DY+ ++DN +L LV C R
Sbjct: 120 SQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRI 179
Query: 185 CAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYR- 243
CAFNN Q Q EL+ IE L E+ G ++N L+ L+QR+ G D R
Sbjct: 180 CAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLY---SLIQRSKCGPVGSDERV 236
Query: 244 -QYQAKVEWQVEKHKQELRENESNWAYKALLRVKHLMLLHYEIFVFL------------- 289
+++ + +E + E+N AL++ + +L ++F+ L
Sbjct: 237 KEFKQSLIKYMETQRSYTALAEANCLKGALIKTQLCVLFCIQLFLRLIILWLCILHSMCN 296
Query: 290 LLCSILFFIIFLF 302
L C +LF + LF
Sbjct: 297 LFCCLLFSMCNLF 309
>gi|18594498 GTPase, IMAP family member 1 [Homo sapiens]
Length = 306
Score = 209 bits (533), Expect = 2e-54
Identities = 120/256 (46%), Positives = 162/256 (63%), Gaps = 4/256 (1%)
Query: 1 MGGFQRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQ 60
MGG + G E+ S R+ILVG+TG GKSATGNSILGQ F S+L A
Sbjct: 1 MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT 60
Query: 61 SVTRTCQVKTGTWNGRKVLVVDTPSIFESQAD-TQELYKNIGDCYLLSAPGPHVLLLVIQ 119
SVTR C + W+ V VVDTP IF SQ T + G CYLLSAPGPH LLLV Q
Sbjct: 61 SVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQ 120
Query: 120 LGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVRE 179
LGRFTAQD A+R+V+++FG ++ +VI+FT KEDL G +L DYV+NT+N +L++LV E
Sbjct: 121 LGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 180
Query: 180 CERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQ 239
C R CAF+N + EQ Q +LL ++E L E +G+ +SN+++ AQ+L+ G +
Sbjct: 181 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGP---E 237
Query: 240 EDYRQYQAKVEWQVEK 255
E R+ +V +V++
Sbjct: 238 ERLRRVAERVAARVQR 253
>gi|56119214 GTPase, IMAP family member 6 [Homo sapiens]
Length = 292
Score = 189 bits (481), Expect = 2e-48
Identities = 98/201 (48%), Positives = 134/201 (66%), Gaps = 1/201 (0%)
Query: 24 TPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDT 83
TP LR+IL+GKTG GKSATGNSILG+ VFESKL + VT+T Q ++ W G+++ V+DT
Sbjct: 37 TPRRLRLILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQRRSREWAGKELEVIDT 96
Query: 84 PSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAM 143
P+I Q + E+ I +LSAPGPH +LLV QLGRFT +D +R+++EVFG G +
Sbjct: 97 PNILSPQV-SPEVADAICQAIVLSAPGPHAVLLVTQLGRFTDEDQQVVRRLQEVFGVGVL 155
Query: 144 RHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAEL 203
H +++FT KEDL G +L+DYV T+N +L L RR+C FNN EEQ Q EL
Sbjct: 156 GHTILVFTRKEDLAGGSLEDYVRETNNQALAWLDVTLARRHCGFNNRAQGEEQEAQLREL 215
Query: 204 LAVIERLGREREGSFHSNDLF 224
+ +E + E EG ++SN +
Sbjct: 216 MEKVEAIMWENEGDYYSNKAY 236
>gi|23397516 GTPase, IMAP family member 7 [Homo sapiens]
Length = 300
Score = 189 bits (481), Expect = 2e-48
Identities = 92/204 (45%), Positives = 139/204 (68%), Gaps = 3/204 (1%)
Query: 27 ALRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSI 86
+LRI+LVGKTG GKSAT N+ILG+ +F+S++ AQ+VT+ CQ + W GR +LVVDTP +
Sbjct: 8 SLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTPGL 67
Query: 87 FESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHV 146
F+++ K I C + S PGPH ++LV+ LGR+T ++ + +K VFG AM+H+
Sbjct: 68 FDTKESLDTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKSAMKHM 127
Query: 147 VILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNN--WGSVEEQRQQQAELL 204
VILFT KE+L GQ+ D++A+ D LK +V+EC R CAF+N S E+ Q EL+
Sbjct: 128 VILFTRKEELEGQSFHDFIADAD-VGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQELV 186
Query: 205 AVIERLGREREGSFHSNDLFLDAQ 228
+IE++ + EG++ S+D++ D +
Sbjct: 187 ELIEKMVQCNEGAYFSDDIYKDTE 210
>gi|8922873 GTPase, IMAP family member 4 [Homo sapiens]
Length = 329
Score = 179 bits (454), Expect = 3e-45
Identities = 103/276 (37%), Positives = 160/276 (57%), Gaps = 20/276 (7%)
Query: 8 KYGTMAEGRSEDNLSATP-------PALRIILVGKTGCGKSATGNSILGQPVFESKLRAQ 60
+YG+M+ S S P LRI+LVGKTG GKSATGNSILG+ VF S A+
Sbjct: 4 QYGSMSFNPSTPGASYGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK 63
Query: 61 SVTRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL 120
S+T+ C+ ++ +W +++VVDTP IF+++ E K I C LL++PGPH LLLV+ L
Sbjct: 64 SITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL 123
Query: 121 GRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVREC 180
GR+T ++ A K+ ++FG A ++++FT K+DLG L DY+ ++DL+
Sbjct: 124 GRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPE-DIQDLMDIF 182
Query: 181 ERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQE 240
RYCA NN + EQ Q+A+LL +I+R+ RE + ++N ++ A+ + A QE
Sbjct: 183 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQAMQE 242
Query: 241 DYR------------QYQAKVEWQVEKHKQELRENE 264
+R +Y+ K+ +K +QE R+ +
Sbjct: 243 LHRVELEREKARIREEYEEKIRKLEDKVEQEKRKKQ 278
>gi|28416956 GTPase, IMAP family member 8 [Homo sapiens]
Length = 665
Score = 164 bits (414), Expect = 1e-40
Identities = 89/195 (45%), Positives = 122/195 (62%), Gaps = 3/195 (1%)
Query: 28 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSIF 87
LR++L+GK GKSATGN+ILG+ VF+SK Q+V + CQ ++ RKV+V+DTP +F
Sbjct: 11 LRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVVVIDTPDLF 70
Query: 88 ESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVV 147
S A ++ +NI C LSAP H LLLVI +G FT +D + +++VFG A RH++
Sbjct: 71 SSIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQVFGAEARRHII 130
Query: 148 ILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNN-WGSVEEQRQQQAELLAV 206
I+FT K+DLG L D++ N LK LV++ E RYC FNN S +EQ Q ELL
Sbjct: 131 IVFTRKDDLGDDLLQDFIEK--NKPLKQLVQDYEGRYCIFNNKTNSKDEQITQVLELLRK 188
Query: 207 IERLGREREGSFHSN 221
+E L G +H N
Sbjct: 189 VESLVNTNGGPYHVN 203
Score = 160 bits (404), Expect = 2e-39
Identities = 83/189 (43%), Positives = 120/189 (63%), Gaps = 3/189 (1%)
Query: 28 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPS-- 85
L I+LVG++G GKSATGNSILG VF S+LRAQ VT+T Q TW+G++V+VVDTPS
Sbjct: 439 LNIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTWDGQEVVVVDTPSFN 498
Query: 86 -IFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMR 144
+ + + D L + + C G +LV QLGRFT +D A+ K++ +FG +
Sbjct: 499 QMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFTK 558
Query: 145 HVVILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELL 204
+ ++LFT KEDLG L+D++ N+DN +L+ + ++C RR CAFNN + + Q Q LL
Sbjct: 559 YAIMLFTRKEDLGAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQETQVKALL 618
Query: 205 AVIERLGRE 213
+ L +E
Sbjct: 619 TKVNDLRKE 627
Score = 130 bits (328), Expect = 1e-30
Identities = 84/237 (35%), Positives = 127/237 (53%), Gaps = 19/237 (8%)
Query: 10 GTMAEGRSEDNLSATPPA-------LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSV 62
G +G E L +T P L ++LVGK G GKSA GNSILG+ F++ QSV
Sbjct: 223 GDKPQGPRERQLQSTGPEQNPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSV 282
Query: 63 TRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGR 122
T++ ++ +W +KV ++D P I + E+ K+I GPH LLV LG
Sbjct: 283 TQSFLSESRSWRKKKVSIIDAPDISSLKNIDSEVRKHI-------CTGPHAFLLVTPLGF 335
Query: 123 FTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVRECER 182
+T D + ++ FG +++IL T KEDLG Q LD ++ N+ N +L L+++C+
Sbjct: 336 YTKNDEAVLSTIQNNFGEKFFEYMIILLTRKEDLGDQDLDTFLRNS-NKALYGLIQKCKN 394
Query: 183 RYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFH---SNDLFLDAQLLQRTGAG 236
RY AFN + EE+++Q ELL IE + + G+ H L+ L+ R+G G
Sbjct: 395 RYSAFNYRATGEEEQRQADELLEKIESMVHQ-NGNKHCVFREKETLNIVLVGRSGTG 450
>gi|24307899 Era-like 1 [Homo sapiens]
Length = 437
Score = 36.2 bits (82), Expect = 0.037
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 28 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSI 86
LR++L+G GKS N +LG+ VF R TR + T +V+++DTP I
Sbjct: 114 LRVVLLGAPNAGKSTLSNQLLGRKVFPVS-RKVHTTRCQALGVITEKETQVILLDTPGI 171
>gi|239753874 PREDICTED: similar to hCG2036814 [Homo sapiens]
Length = 547
Score = 35.8 bits (81), Expect = 0.049
Identities = 55/248 (22%), Positives = 88/248 (35%), Gaps = 74/248 (29%)
Query: 28 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-----------KTGTWNGR 76
+ + L G T GKS+ GN +LG F S SVT C + + G
Sbjct: 284 INLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRRGGLEVAL 343
Query: 77 KVLVVDTPSIFESQADTQELYKNIGD--CYLLSAPGPHVLLLV----------------- 117
+V V+DTP S+ + + + + + + G H+ LLV
Sbjct: 344 QVQVLDTPGYPHSRLSKKYVKQEVKEALAHHFGQGGLHLALLVQRADVPFCGQEVTDPVQ 403
Query: 118 ----------------------IQL--GRFTAQDTVAIRKVKEVFGTGA----------- 142
IQL G+ +D + + VFG+ +
Sbjct: 404 MIQRTCLATNVMTIQQATLLSNIQLFSGQNRLKDFKLNQPLSSVFGSNSKVQFLSQFKEL 463
Query: 143 -----MRHVVILFTHKEDL--GGQALDDYVANTDNCSLKDLVRECERRYC-AFNNWGSVE 194
M + ILFTH E + G D Y+ + +LK L+ + +Y + S+
Sbjct: 464 LGHAWMNYTAILFTHAEKIEEAGLTEDKYLHEASD-TLKTLLNSIQHKYVFQYKKGKSLN 522
Query: 195 EQRQQQAE 202
EQR + E
Sbjct: 523 EQRMKILE 530
>gi|239748437 PREDICTED: similar to hCG2036814 [Homo sapiens]
Length = 547
Score = 35.8 bits (81), Expect = 0.049
Identities = 55/248 (22%), Positives = 88/248 (35%), Gaps = 74/248 (29%)
Query: 28 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-----------KTGTWNGR 76
+ + L G T GKS+ GN +LG F S SVT C + + G
Sbjct: 284 INLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRRGGLEVAL 343
Query: 77 KVLVVDTPSIFESQADTQELYKNIGD--CYLLSAPGPHVLLLV----------------- 117
+V V+DTP S+ + + + + + + G H+ LLV
Sbjct: 344 QVQVLDTPGYPHSRLSKKYVKQEVKEALAHHFGQGGLHLALLVQRADVPFCGQEVTDPVQ 403
Query: 118 ----------------------IQL--GRFTAQDTVAIRKVKEVFGTGA----------- 142
IQL G+ +D + + VFG+ +
Sbjct: 404 MIQRTCLATNVMTIQQATLLSNIQLFSGQNRLKDFKLNQPLSSVFGSNSKVQFLSQFKEL 463
Query: 143 -----MRHVVILFTHKEDL--GGQALDDYVANTDNCSLKDLVRECERRYC-AFNNWGSVE 194
M + ILFTH E + G D Y+ + +LK L+ + +Y + S+
Sbjct: 464 LGHAWMNYTAILFTHAEKIEEAGLTEDKYLHEASD-TLKTLLNSIQHKYVFQYKKGKSLN 522
Query: 195 EQRQQQAE 202
EQR + E
Sbjct: 523 EQRMKILE 530
>gi|239742371 PREDICTED: hypothetical protein XP_002342504 [Homo
sapiens]
Length = 547
Score = 35.8 bits (81), Expect = 0.049
Identities = 55/248 (22%), Positives = 88/248 (35%), Gaps = 74/248 (29%)
Query: 28 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV-----------KTGTWNGR 76
+ + L G T GKS+ GN +LG F S SVT C + + G
Sbjct: 284 INLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRRGGLEVAL 343
Query: 77 KVLVVDTPSIFESQADTQELYKNIGD--CYLLSAPGPHVLLLV----------------- 117
+V V+DTP S+ + + + + + + G H+ LLV
Sbjct: 344 QVQVLDTPGYPHSRLSKKYVKQEVKEALAHHFGQGGLHLALLVQRADVPFCGQEVTDPVQ 403
Query: 118 ----------------------IQL--GRFTAQDTVAIRKVKEVFGTGA----------- 142
IQL G+ +D + + VFG+ +
Sbjct: 404 MIQRTCLATNVMTIQQATLLSNIQLFSGQNRLKDFKLNQPLSSVFGSNSKVQFLSQFKEL 463
Query: 143 -----MRHVVILFTHKEDL--GGQALDDYVANTDNCSLKDLVRECERRYC-AFNNWGSVE 194
M + ILFTH E + G D Y+ + +LK L+ + +Y + S+
Sbjct: 464 LGHAWMNYTAILFTHAEKIEEAGLTEDKYLHEASD-TLKTLLNSIQHKYVFQYKKGKSLN 522
Query: 195 EQRQQQAE 202
EQR + E
Sbjct: 523 EQRMKILE 530
>gi|189011592 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 12 isoform b [Homo sapiens]
Length = 422
Score = 34.3 bits (77), Expect = 0.14
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 187 FNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQ 246
F+ + + +Q +EL A+IE++ R+ + + +LL C E + ++
Sbjct: 121 FSRTNIISDLEEQISELTAIIEQMNRDHQSA---------QKLLSSEMDLRCAEMKQNFE 171
Query: 247 AKVEWQVEKHKQELRENESNWAYKALLRVKHL 278
K E H+ EL E E+N YKA L+ + L
Sbjct: 172 NKNRELKEAHEAELSELENN--YKAALKAEKL 201
>gi|189011586 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 12 isoform a [Homo sapiens]
Length = 445
Score = 34.3 bits (77), Expect = 0.14
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 187 FNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQ 246
F+ + + +Q +EL A+IE++ R+ + + +LL C E + ++
Sbjct: 121 FSRTNIISDLEEQISELTAIIEQMNRDHQSA---------QKLLSSEMDLRCAEMKQNFE 171
Query: 247 AKVEWQVEKHKQELRENESNWAYKALLRVKHL 278
K E H+ EL E E+N YKA L+ + L
Sbjct: 172 NKNRELKEAHEAELSELENN--YKAALKAEKL 201
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
(with transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 33.5 bits (75), Expect = 0.24
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 152 HKEDLGGQAL-------DDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELL 204
H+E L G+A + A N L +++ E + N +VE +R++ LL
Sbjct: 264 HEESLVGRAQVVDLLQQELTAAEQRNQILSQQLQQMEAEHNTLRN--TVETEREESKILL 321
Query: 205 AVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEWQVEKHKQELRENE 264
+E ER+ SFH+ + L Q AG Q + + +E +KHK E+ E
Sbjct: 322 EKMELEVAERKLSFHNLQEEMHHLLEQFEQAGQAQAELESRYSALE---QKHKAEMEEKT 378
Query: 265 SN 266
S+
Sbjct: 379 SH 380
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 30.4 bits (67), Expect = 2.1
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 178 RECERRYCAFNNWGSVEEQRQQQAELLAVI--ERLGREREGSFHSNDLFL--DAQLLQRT 233
RE RR + EE +Q++ +LL +R +E E + + + QLL+
Sbjct: 1128 REKRRRQELERQYREEEEVQQEEEQLLREEPEKRRRQELERQYREEEELQQEEEQLLREE 1187
Query: 234 GAGACQEDYRQYQAKVEWQVEKHKQELRENE 264
QE RQY+ + E Q +K KQ R+ +
Sbjct: 1188 QEKRRQERERQYREEEELQRQKRKQRYRDED 1218
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 192 SVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEW 251
S EEQ Q +A+ A E+L +E E A L Q+ A A E ++++ +
Sbjct: 2120 SAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLR 2179
Query: 252 QVEKHKQEL 260
Q + +QEL
Sbjct: 2180 QKAQVEQEL 2188
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 192 SVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEW 251
S EEQ Q +A+ A E+L +E E A L Q+ A A E ++++ +
Sbjct: 2124 SAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLR 2183
Query: 252 QVEKHKQEL 260
Q + +QEL
Sbjct: 2184 QKAQVEQEL 2192
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 192 SVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEW 251
S EEQ Q +A+ A E+L +E E A L Q+ A A E ++++ +
Sbjct: 2120 SAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLR 2179
Query: 252 QVEKHKQEL 260
Q + +QEL
Sbjct: 2180 QKAQVEQEL 2188
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 192 SVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEW 251
S EEQ Q +A+ A E+L +E E A L Q+ A A E ++++ +
Sbjct: 2088 SAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLR 2147
Query: 252 QVEKHKQEL 260
Q + +QEL
Sbjct: 2148 QKAQVEQEL 2156
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 192 SVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEW 251
S EEQ Q +A+ A E+L +E E A L Q+ A A E ++++ +
Sbjct: 2257 SAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLR 2316
Query: 252 QVEKHKQEL 260
Q + +QEL
Sbjct: 2317 QKAQVEQEL 2325
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 192 SVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEW 251
S EEQ Q +A+ A E+L +E E A L Q+ A A E ++++ +
Sbjct: 2098 SAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLR 2157
Query: 252 QVEKHKQEL 260
Q + +QEL
Sbjct: 2158 QKAQVEQEL 2166
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 192 SVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEW 251
S EEQ Q +A+ A E+L +E E A L Q+ A A E ++++ +
Sbjct: 2106 SAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLR 2165
Query: 252 QVEKHKQEL 260
Q + +QEL
Sbjct: 2166 QKAQVEQEL 2174
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 30.4 bits (67), Expect = 2.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 192 SVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAGACQEDYRQYQAKVEW 251
S EEQ Q +A+ A E+L +E E A L Q+ A A E ++++ +
Sbjct: 2147 SAEEQAQARAQAQAAAEKLRKEAEQEAARRAQAEQAALRQKQAADAEMEKHKKFAEQTLR 2206
Query: 252 QVEKHKQEL 260
Q + +QEL
Sbjct: 2207 QKAQVEQEL 2215
>gi|20544129 DEAH (Asp-Glu-Ala-His) box polypeptide 35 [Homo
sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 2.1
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 30 IILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGR 76
+++VG+TGCGKS L + + ++ R VT+ +V T GR
Sbjct: 73 VVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGR 119
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 30.4 bits (67), Expect = 2.1
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 8 KYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQ 67
K G E R ++ + TPP R + +G G S +G+S S+ R+ SV+
Sbjct: 661 KPGDPREARRKERPARTPPRRRTLSGSGSGSGSSYSGSS--------SRSRSLSVSSVSS 712
Query: 68 VKTGTWNGRKVLVVDTPSIFESQA 91
V + T + VD+ ++ A
Sbjct: 713 VSSATSSSSSAHSVDSEDMYADLA 736
>gi|158937242 cytochrome P450, family 4, subfamily A, polypeptide 11
[Homo sapiens]
Length = 519
Score = 29.6 bits (65), Expect = 3.5
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 185 CAFNNWGSVEEQRQQQAELLAV--IERLGRER-EGSFHSNDLFLDAQLLQRTGAGACQED 241
CAF++ GS++ R Q+ + A+ + L R +FH ND R ACQ
Sbjct: 200 CAFSHQGSIQVDRNSQSYIQAISDLNNLVFSRVRNAFHQNDTIYSLTSAGRWTHRACQLA 259
Query: 242 Y---------RQYQAKVEWQVEKHKQE 259
+ R+ Q + E ++EK K++
Sbjct: 260 HQHTDQVIQLRKAQLQKEGELEKIKRK 286
>gi|56549640 septin 2 [Homo sapiens]
Length = 361
Score = 29.3 bits (64), Expect = 4.6
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 30 IILVGKTGCGKSATGNSILGQPVFESKL---RAQSVTRTCQVKTGTWN------GRKVLV 80
+++VG++G GKS NS+ ++ ++ A+ + RT Q++ T ++ V
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 81 VDTPSIFESQADTQELYKNI 100
VDTP + + ++ +K I
Sbjct: 100 VDTPG-YGDAINCRDCFKTI 118
>gi|56549638 septin 2 [Homo sapiens]
Length = 361
Score = 29.3 bits (64), Expect = 4.6
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 30 IILVGKTGCGKSATGNSILGQPVFESKL---RAQSVTRTCQVKTGTWN------GRKVLV 80
+++VG++G GKS NS+ ++ ++ A+ + RT Q++ T ++ V
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 81 VDTPSIFESQADTQELYKNI 100
VDTP + + ++ +K I
Sbjct: 100 VDTPG-YGDAINCRDCFKTI 118
>gi|56549636 septin 2 [Homo sapiens]
Length = 361
Score = 29.3 bits (64), Expect = 4.6
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 30 IILVGKTGCGKSATGNSILGQPVFESKL---RAQSVTRTCQVKTGTWN------GRKVLV 80
+++VG++G GKS NS+ ++ ++ A+ + RT Q++ T ++ V
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 81 VDTPSIFESQADTQELYKNI 100
VDTP + + ++ +K I
Sbjct: 100 VDTPG-YGDAINCRDCFKTI 118
>gi|4758158 septin 2 [Homo sapiens]
Length = 361
Score = 29.3 bits (64), Expect = 4.6
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 30 IILVGKTGCGKSATGNSILGQPVFESKL---RAQSVTRTCQVKTGTWN------GRKVLV 80
+++VG++G GKS NS+ ++ ++ A+ + RT Q++ T ++ V
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 81 VDTPSIFESQADTQELYKNI 100
VDTP + + ++ +K I
Sbjct: 100 VDTPG-YGDAINCRDCFKTI 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,567,680
Number of Sequences: 37866
Number of extensions: 496165
Number of successful extensions: 1693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1628
Number of HSP's gapped (non-prelim): 92
length of query: 307
length of database: 18,247,518
effective HSP length: 102
effective length of query: 205
effective length of database: 14,385,186
effective search space: 2948963130
effective search space used: 2948963130
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.