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Search of human proteins with 28376658
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28376658 hypothetical protein LOC285172 [Homo sapiens]
(530 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28376658 hypothetical protein LOC285172 [Homo sapiens] 1044 0.0
gi|19923646 family with sequence similarity 126, member A [Homo ... 509 e-144
gi|17402886 HEAT-like repeat-containing protein isoform 1 [Homo ... 38 0.020
gi|91982772 mucin 17 [Homo sapiens] 38 0.026
gi|219802034 nuclear factor related to kappaB binding protein is... 37 0.034
gi|23346420 nuclear factor related to kappaB binding protein iso... 37 0.034
gi|23308537 coiled-coil domain containing 140 [Homo sapiens] 37 0.045
gi|57864582 hornerin [Homo sapiens] 36 0.076
gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens] 36 0.076
gi|55749544 SH3 multiple domains 1 [Homo sapiens] 36 0.100
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 35 0.13
gi|38372909 jumonji domain containing 1B [Homo sapiens] 35 0.17
gi|22035604 mitogen-activated protein kinase kinase kinase kinas... 35 0.17
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 34 0.29
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.38
gi|216548091 leucine zipper protein 1 [Homo sapiens] 33 0.49
gi|216548085 leucine zipper protein 1 [Homo sapiens] 33 0.49
gi|22035606 mitogen-activated protein kinase kinase kinase kinas... 33 0.49
gi|22035602 mitogen-activated protein kinase kinase kinase kinas... 33 0.49
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 33 0.65
gi|208431824 forkhead box I3 [Homo sapiens] 33 0.84
gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens] 32 1.4
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 32 1.4
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 32 1.4
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 32 1.4
gi|169215453 PREDICTED: hypothetical protein [Homo sapiens] 32 1.9
gi|169215350 PREDICTED: hypothetical protein [Homo sapiens] 32 1.9
gi|146232000 checkpoint suppressor 1 isoform 1 [Homo sapiens] 32 1.9
gi|51093865 checkpoint suppressor 1 isoform 2 [Homo sapiens] 32 1.9
gi|110349786 Alstrom syndrome 1 [Homo sapiens] 31 2.5
>gi|28376658 hypothetical protein LOC285172 [Homo sapiens]
Length = 530
Score = 1044 bits (2700), Expect = 0.0
Identities = 530/530 (100%), Positives = 530/530 (100%)
Query: 1 MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQL 60
MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQL
Sbjct: 1 MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQL 60
Query: 61 FELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNN 120
FELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNN
Sbjct: 61 FELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNN 120
Query: 121 KVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEV 180
KVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEV
Sbjct: 121 KVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEV 180
Query: 181 LSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQL 240
LSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQL
Sbjct: 181 LSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQL 240
Query: 241 LTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKV 300
LTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKV
Sbjct: 241 LTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKV 300
Query: 301 LKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQ 360
LKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQ
Sbjct: 301 LKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQ 360
Query: 361 PIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSV 420
PIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSV
Sbjct: 361 PIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSV 420
Query: 421 ELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGGTNLA 480
ELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGGTNLA
Sbjct: 421 ELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGGTNLA 480
Query: 481 ANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV 530
ANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV
Sbjct: 481 ANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV 530
>gi|19923646 family with sequence similarity 126, member A [Homo
sapiens]
Length = 521
Score = 509 bits (1312), Expect = e-144
Identities = 278/537 (51%), Positives = 365/537 (67%), Gaps = 30/537 (5%)
Query: 1 MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQL 60
M +++ VVEEWLSEFK LP+T + +YA L K +LV +LYKVIQ+ +ELLEPVCHQL
Sbjct: 1 MFTSEKGVVEEWLSEFKTLPETSLPNYATNLKDKSSLVSSLYKVIQEPQSELLEPVCHQL 60
Query: 61 FELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNN 120
FE YRS E +L +FTLQFLPEL+W YL ++ SR+ S+GCIEALLLG+YNLEI DK G+
Sbjct: 61 FEFYRSGEEQLLQFTLQFLPELIWCYLAVSASRNVHSSGCIEALLLGVYNLEIVDKQGHT 120
Query: 121 KVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEV 180
KVLSFTIPSLSKPS+YHEPS+IGSMALTE AL QH L +VVYS HPQRE TAQNRFEV
Sbjct: 121 KVLSFTIPSLSKPSVYHEPSSIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEV 180
Query: 181 LSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQL 240
L+FL+LCYN+A+ YMP+ S QSLC++ SR+CV G+PRQH + +K + RI + FMVQ+
Sbjct: 181 LTFLLLCYNAALTYMPSVSLQSLCQICSRICVCGYPRQHVRKYKGISSRIPVSSGFMVQM 240
Query: 241 LTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKV 300
LTG+Y+A YNG+WDL Q+ LDDIIYRAQLEL+ +PLLVANA+K SLP S +EG +
Sbjct: 241 LTGIYFAFYNGEWDLAQKALDDIIYRAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRC 300
Query: 301 LKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQ 360
++VE+TPT RISR A+T+ SIR HRW+R G + G EE + +++ DEGF S A+ S+
Sbjct: 301 IQVEITPTSSRISRNAVTSMSIRGHRWKRHGNTELTGQEELMEISEVDEGFYSRAASSTS 360
Query: 361 PIGTKPSS-------SSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPT 413
G SS S + R + K+KET + ES +D RKQ + +
Sbjct: 361 QSGLSNSSHNCSNKPSIGKNHRRSGGSKTGGKEKET-----TGESCKDHFARKQTQRAQS 415
Query: 414 DLSVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNG----SQASTSI 469
+++EL +K+ L+L Q +PK +S L +TA+ SKSF+ V+G S+++
Sbjct: 416 ----ENLELLSLKR-LTLTTSQSLPKPSSHGLAKTAATVFSKSFEQVSGVTVPHNPSSAV 470
Query: 470 GVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQL 526
G G A +ANR+S SLQE++L E EL P + Q R PS ++ L
Sbjct: 471 GCG-------AGTDANRFSACSLQEEKLIYVSERTEL--PMKHQSGQQRPPSISITL 518
>gi|17402886 HEAT-like repeat-containing protein isoform 1 [Homo
sapiens]
Length = 873
Score = 38.1 bits (87), Expect = 0.020
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 34 KKTLVPALYKVIQDSNNELLEPVCHQLFELYRSSEVRLKRFTLQFLPELMWVYLRLTVSR 93
K+ ++P + + QD E+ +C QL + + L + + LPEL + +SR
Sbjct: 210 KREILPLVKSLCQDVEYEVRSCMCRQLENIAQGIGTELTKSVV--LPEL------IELSR 261
Query: 94 DRQSNGCIEALLLGIYNLEIADKDGNNKVLSFTIPSLSKPSIYHEPSTIGSMALTEGALC 153
D S+ + A + L+I D D ++ + + S + S + S + S++ G LC
Sbjct: 262 DEGSSVRLAAFETLVNLLDIFDTDDRSQTILPLVKSFCEKSFKADESILISLSFHLGKLC 321
Query: 154 QHDLIRVVYSDLH 166
H L + D H
Sbjct: 322 -HGLYGIFTPDQH 333
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 37.7 bits (86), Expect = 0.026
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 22/182 (12%)
Query: 302 KVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQP 361
+ T T+P S+T +TTAS + + S+ + EG L+S P
Sbjct: 409 EASTTSTIPVDSKTFVTTAS-------EASSSPTTAEDTSIATSTPSEG---STPLTSMP 458
Query: 362 IGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLS--VDS 419
+ T P +SS+ +L T +K + T S ++S SP + V P++ S + S
Sbjct: 459 VSTTPVASSEASNLS--TTPVDSKTQVTTST-EASSSPPTAEVNSMPTSTPSEGSTPLTS 515
Query: 420 VELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGT--EGGT 477
+ ++ M S + +++ + + T+S +SS S + TSI T EG T
Sbjct: 516 MSVSTMPVASSEASTLSTTPVDTSTPVTTSSEASSSS-----TTPEGTSIPTSTPSEGST 570
Query: 478 NL 479
L
Sbjct: 571 PL 572
Score = 32.0 bits (71), Expect = 1.4
Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 351 FSSGAS-LSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYV 409
+S G++ L S P+ TKP +SS+ +L S ++ ++S SP + +
Sbjct: 2569 YSEGSTPLRSMPVSTKPLASSEASTLSTTPVDTSI---PVTTSTETSSSPTTAKDTSMPI 2625
Query: 410 QQPTDL--SVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQAST 467
P+++ S+ S+ ++ M S + +++ +L+ T++ +SS S ++
Sbjct: 2626 STPSEVSTSLTSILVSTMPVASSEASTLSTTPVDTRTLVTTSTGTSSSPTTAEGSSMPTS 2685
Query: 468 SIGVGTEGGTNL 479
+ G + TN+
Sbjct: 2686 TPGERSTPLTNI 2697
Score = 31.6 bits (70), Expect = 1.9
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 6/139 (4%)
Query: 357 LSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQ-PTDL 415
L+S P+ T P SS+ G+L S + A S + D VV + T L
Sbjct: 2458 LASMPVSTTPVVSSEAGTLSTTPVDTSTPMTTSTEASSSPTTAEDIVVPISTASEGSTLL 2517
Query: 416 SVDSVELTPMKKH-----LSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIG 470
+ V TP+ + P P + S + +A+++ S S+ ST +
Sbjct: 2518 TSIPVSTTPVASPEASTLSTTPVDSNSPVVTSTEISSSATSAEGTSMPTSTYSEGSTPLR 2577
Query: 471 VGTEGGTNLAANNANRYST 489
LA++ A+ ST
Sbjct: 2578 SMPVSTKPLASSEASTLST 2596
>gi|219802034 nuclear factor related to kappaB binding protein isoform
1 [Homo sapiens]
Length = 1299
Score = 37.4 bits (85), Expect = 0.034
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 256 GQEVLDDIIYRAQLELFSQ-----PLLVANAMKNS-----LPFDAPDSTQEGQKVLKVEV 305
GQ ++ + QL + Q PL N LP + + +GQ VL++
Sbjct: 915 GQNIIKQVAITGQLGVKPQTGNSIPLTATNFRIQGKDVLRLPPSSITTDAKGQTVLRI-- 972
Query: 306 TPTV-PRISRTAITTASIRRHRWRREG---AEGVNGG----EESVNLNDADEGFSSGASL 357
TP + ++++ +TT + + + G +G++ V+ D+ SS ++
Sbjct: 973 TPDMMATLAKSQVTTVKLTQDLFGTGGNTTGKGISATLHVTSNPVHAADSPAKASSASAP 1032
Query: 358 SSQPIGT---------KPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVR--K 406
SS P GT KP+ +S A G S D++ S + SSE+ + +R +
Sbjct: 1033 SSTPTGTTVVKVTPDLKPTEASSSAFRLMPALGVSVADQKGKSTVASSEAKPAATIRIVQ 1092
Query: 407 QYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQAS 466
P T K+ S+ +G +++SL + +A+ SK+ +G+ AS
Sbjct: 1093 GLGVMPPKAGQTITVATHAKQGASVASGSGTVHTSAVSL-PSMNAAVSKTVAVASGA-AS 1150
Query: 467 TSIGVGTEGGT 477
T I + T T
Sbjct: 1151 TPISISTGAPT 1161
>gi|23346420 nuclear factor related to kappaB binding protein isoform
2 [Homo sapiens]
Length = 1324
Score = 37.4 bits (85), Expect = 0.034
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 33/251 (13%)
Query: 256 GQEVLDDIIYRAQLELFSQ-----PLLVANAMKNS-----LPFDAPDSTQEGQKVLKVEV 305
GQ ++ + QL + Q PL N LP + + +GQ VL++
Sbjct: 940 GQNIIKQVAITGQLGVKPQTGNSIPLTATNFRIQGKDVLRLPPSSITTDAKGQTVLRI-- 997
Query: 306 TPTV-PRISRTAITTASIRRHRWRREG---AEGVNGG----EESVNLNDADEGFSSGASL 357
TP + ++++ +TT + + + G +G++ V+ D+ SS ++
Sbjct: 998 TPDMMATLAKSQVTTVKLTQDLFGTGGNTTGKGISATLHVTSNPVHAADSPAKASSASAP 1057
Query: 358 SSQPIGT---------KPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVR--K 406
SS P GT KP+ +S A G S D++ S + SSE+ + +R +
Sbjct: 1058 SSTPTGTTVVKVTPDLKPTEASSSAFRLMPALGVSVADQKGKSTVASSEAKPAATIRIVQ 1117
Query: 407 QYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQAS 466
P T K+ S+ +G +++SL + +A+ SK+ +G+ AS
Sbjct: 1118 GLGVMPPKAGQTITVATHAKQGASVASGSGTVHTSAVSL-PSMNAAVSKTVAVASGA-AS 1175
Query: 467 TSIGVGTEGGT 477
T I + T T
Sbjct: 1176 TPISISTGAPT 1186
>gi|23308537 coiled-coil domain containing 140 [Homo sapiens]
Length = 163
Score = 37.0 bits (84), Expect = 0.045
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 273 SQPLLVANAMKNSLPFDAPDSTQEGQKVLKVEVTPTVPRISR------TAITTASIRRHR 326
S P L+A +S P+D + QE E VPR+ + TA T +R+R
Sbjct: 6 SNPDLLAEP-GSSPPWDHGNQRQEAAN----ESNTRVPRVLKAHLGPETAQPTKRSKRNR 60
Query: 327 WRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRG---SLRKVATGRS 383
WRR+ +G + L AD G G S+ S+S R S + GR+
Sbjct: 61 WRRQSCQGPSPARSGQFLGSADLGLQRGVLKSAARTCLSEISNSTRASPESAQSTDPGRA 120
Query: 384 AKDK----ETASAIKSSESPRDSVVRKQ 407
A+ + T + K E + +K+
Sbjct: 121 ARPRTRTLPTPHSFKIGEEAEEMKKKKE 148
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 36.2 bits (82), Expect = 0.076
Identities = 45/180 (25%), Positives = 63/180 (35%), Gaps = 7/180 (3%)
Query: 325 HRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSA 384
HR R G G S + + + G AS S G +SS Q S + +G S
Sbjct: 1992 HRESRSGQSSGYGQHGSSSGHSSTHGQHGSASGQSSSCGQHGASSGQSSSHGQHGSGSSQ 2051
Query: 385 KDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLS 444
S +SP Q P S S +GQ P + S
Sbjct: 2052 SSGYGRQGSGSGQSPGHGQRGSGSRQSP------SYGRHGSGSGRSSSSGQHGPGLGESS 2105
Query: 445 LIRTASASSSKSFDYV-NGSQASTSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEG 503
+SS +S Y +GS + S G G G + ++ R+ + S R GQ G G
Sbjct: 2106 GFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSRYGQHGSG 2165
Score = 32.7 bits (73), Expect = 0.84
Identities = 47/199 (23%), Positives = 69/199 (34%), Gaps = 8/199 (4%)
Query: 325 HRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSA 384
HR R G G S + + + G S S G +SS Q S + +G S
Sbjct: 1522 HRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGSSQ 1581
Query: 385 KDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLS 444
S +SP Q P S S +GQ + S
Sbjct: 1582 SSGYGRQGSGSGQSPGHGQRGSGSRQSP------SYGRHGSGSGRSSSSGQHGSGLGESS 1635
Query: 445 LIRTASASSSKSFDYV-NGSQASTSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEG 503
+SS +S Y +GS + S G G G + ++ R+ + S R GQ G G
Sbjct: 1636 GFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSRSSSRYGQHGSG 1695
Query: 504 -KELLSPGAPLTKQSRSPS 521
++ G + +SPS
Sbjct: 1696 SRQSSGHGRQGSGSGQSPS 1714
Score = 30.0 bits (66), Expect = 5.5
Identities = 46/199 (23%), Positives = 68/199 (34%), Gaps = 8/199 (4%)
Query: 325 HRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSA 384
HR R G G S + + + G S S G +SS Q S + +G S
Sbjct: 2462 HRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGSSQ 2521
Query: 385 KDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLS 444
S +SP Q P S S +GQ + S
Sbjct: 2522 SSGYGRQGSGSGQSPGHGQRGSGSRQSP------SYGRHGSGSGRSSSSGQHGSGLGESS 2575
Query: 445 LIRTASASSSKSFDYV-NGSQASTSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEG 503
+SS +S Y +GS + S G G G + ++ R+ + S GQ G G
Sbjct: 2576 GFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQHGSG 2635
Query: 504 -KELLSPGAPLTKQSRSPS 521
++ G + +SPS
Sbjct: 2636 SRQSSGHGRQGSGSGQSPS 2654
Score = 29.6 bits (65), Expect = 7.1
Identities = 42/180 (23%), Positives = 60/180 (33%), Gaps = 7/180 (3%)
Query: 325 HRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSA 384
HR R G G S + + + G S S G +SS Q S + +G S
Sbjct: 1052 HRESRSGQSSGYGQHGSSSGHSSTHGQHGSTSGQSSSCGQHGASSGQSSSHGQHGSGSSQ 1111
Query: 385 KDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLS 444
S +SP Q P S S +GQ + S
Sbjct: 1112 SSGYGRQGSGSGQSPGHGQRGSGSRQSP------SYGRHGSGSGRSSSSGQHGSGLGESS 1165
Query: 445 LIRTASASSSKSFDYV-NGSQASTSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEG 503
+SS +S Y +GS + S G G G + ++ R+ + S GQ G G
Sbjct: 1166 GFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERHGSSSGSSSHYGQHGSG 1225
Score = 29.3 bits (64), Expect = 9.3
Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 7/161 (4%)
Query: 350 GFSSGASLSSQPIGTKPSSSS---QRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRK 406
G SG S + G+ SSS Q GS + + G S + + S +S R+
Sbjct: 495 GSRSGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSGQSPSPSRGRHESGSRQ 554
Query: 407 QYVQQPTDL-SVDSVELTPMKK---HLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNG 462
P S S P + H S Q S + S+S S +G
Sbjct: 555 SSSYGPHGYGSGRSSSRGPYESGSGHSSGLGHQESRSGQSSGYGQHGSSSGHSSTHGQHG 614
Query: 463 SQASTSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEG 503
S + S G G T+ +++ ++ + S Q R GQ G G
Sbjct: 615 STSGQSSSCGQHGATSGQSSSHGQHGSGSSQSSRYGQQGSG 655
>gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]
Length = 858
Score = 36.2 bits (82), Expect = 0.076
Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 22/191 (11%)
Query: 275 PLLVANAMKNSLPFDAPDSTQEGQKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEG 334
P ++ A++ P APD V TP P S+T + R +++R G +
Sbjct: 353 PSVIPPAVERVQPVMAPD----------VPATPVAPTESQTVLDALQQRLNKYREAGIQA 402
Query: 335 VNGGEE---------SVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAK 385
+GG+E + DA +G ++ + P G + A
Sbjct: 403 RSGGDERKARMHERIAKQYQDAIRAHRAGRKVNFAELPVPPGFPPIPGLESTMGVEEDAV 462
Query: 386 DKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLSL 445
A+A K + + + K + P L + P+ K PA VP L
Sbjct: 463 AATLAAAEKLASAEDSAPADKDEDEPPGHLQGEPPAQAPVAKK---PARPTVPSSQRLPE 519
Query: 446 IRTASASSSKS 456
R +S+ S S
Sbjct: 520 PRASSSKESPS 530
>gi|55749544 SH3 multiple domains 1 [Homo sapiens]
Length = 1105
Score = 35.8 bits (81), Expect = 0.100
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 341 SVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPR 400
++N SS +SLS KP S+S G +R R+ KD + + + S +
Sbjct: 667 TINTTCCSSSSSSSSSLSKTSGDLKPRSASDAG-IRGTPKVRAKKDADANAGLTSCPRAK 725
Query: 401 DSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQV 436
SV K ++ + S + ++++ +++ L P GQ+
Sbjct: 726 PSVRPKPFLNRAESQSQEKMDISTLRRQLR-PTGQL 760
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 35.4 bits (80), Expect = 0.13
Identities = 36/122 (29%), Positives = 45/122 (36%), Gaps = 18/122 (14%)
Query: 338 GEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSE 397
G++ N D + SG SL + P SS+ TG AS SSE
Sbjct: 989 GQDCANSKDCSFAYGSGNSLPASP------SSAHSAGYAPPPTGGPCLPPSKASFFSSSE 1042
Query: 398 SPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSF 457
S PT L DS T P G +VPK + S ASA+SS S
Sbjct: 1043 GAPFSG------SAPTPLRCDSRASTVS------PGGYMVPKGTTASATSAASAASSSSS 1090
Query: 458 DY 459
+
Sbjct: 1091 SF 1092
>gi|38372909 jumonji domain containing 1B [Homo sapiens]
Length = 1761
Score = 35.0 bits (79), Expect = 0.17
Identities = 53/225 (23%), Positives = 83/225 (36%), Gaps = 31/225 (13%)
Query: 306 TPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTK 365
TP RIS T + ++ +++G+ GE S N A GF + SSQP+
Sbjct: 430 TPNTVRISDTGLAAGTVPE---KQKGSRSQASGENSRNSILASSGFGAPLPSSSQPLTFG 486
Query: 366 PSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPM 425
S G L + ++K + S + Q Q+ TDLS
Sbjct: 487 SGRSQSNGVL-------ATENKPLGFSFGCSSA--------QEAQKDTDLS--------- 522
Query: 426 KKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGGTNLAANNAN 485
K Q +P N + + + A S S D + Q+ S+ G G ++ +
Sbjct: 523 KNLFFQCMSQTLPTSNYFTTVSESLADDSSSRD--SFKQSLESLSSGLCKGRSVLGTDTK 580
Query: 486 RYSTVSLQEDRLGQAGEGKELLSPGAPLT-KQSRSPSFNMQLISQ 529
S DR A E L+P P + +R+P + L Q
Sbjct: 581 PGSKAGSSVDRKVPA-ESMPTLTPAFPRSLLNARTPENHENLFLQ 624
>gi|22035604 mitogen-activated protein kinase kinase kinase kinase 4
isoform 2 [Homo sapiens]
Length = 1320
Score = 35.0 bits (79), Expect = 0.17
Identities = 58/259 (22%), Positives = 100/259 (38%), Gaps = 30/259 (11%)
Query: 289 DAPDSTQEG-QKVLKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLN-- 345
+APD TQ+ + EV P VP + + S R + G + G+ + +
Sbjct: 679 EAPDPTQKAWSRSDSDEVPPRVPVRTTSRSPVLSRRDSPLQGSGQQNSQAGQRNSTSSIE 738
Query: 346 -------------DADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASA 392
G SSG+S S G+ P S S G +V + ++ +
Sbjct: 739 PRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRL 798
Query: 393 IKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVP-KINSLSLIRTASA 451
+ + P D K+ V +P V+LT + K L P K+ S S
Sbjct: 799 ENAVKKPED----KKEVFRPLK-PAGEVDLTALAKELRAVEDVRPPHKVTDYSSSSEESG 853
Query: 452 SSSKSFDYV--NGSQASTSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEGKELLSP 509
++ + D V G+ STS T ++L +N T S++ + E + ++P
Sbjct: 854 TTDEEDDDVEQEGADESTSGPEDTRAASSLNLSNG---ETESVKTMIVHDDVESEPAMTP 910
Query: 510 ---GAPLTKQSRSPSFNMQ 525
G + +Q++S S +Q
Sbjct: 911 SKEGTLIVRQTQSASSTLQ 929
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 34.3 bits (77), Expect = 0.29
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 292 DSTQEGQKVLKVEVTP--TVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADE 349
D E K+ +V V P TV S++ T S R R R + ++ + S + + +
Sbjct: 529 DFPVESVKLTEVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSST 588
Query: 350 GFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSES 398
SSG+S SS ++ SSSS + +G S++D ++S SSES
Sbjct: 589 SSSSGSSSSSGSSSSRSSSSSSSST-----SGSSSRD-SSSSTSSSSES 631
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.9 bits (76), Expect = 0.38
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 19/195 (9%)
Query: 291 PDSTQEGQKVLKVEVTPTVPRISRT----AITTASIRRHRWRRE-GAEGVNGGEESVNLN 345
P + + + L + TP S + A TT+S H A GV + V
Sbjct: 2452 PSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSD--VGEP 2509
Query: 346 DADEGFSSGASLSS-QPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSV- 403
A G ++L++ QP + SSSS S ++ S+ ++S SS+S S+
Sbjct: 2510 PASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP 2569
Query: 404 ----VRKQYVQQPTDLSVDSV------ELTPMKKHLSLPAGQVVPKINSLSLIRTASASS 453
V + V PT ++V E TP K+ + +S S ++S+SS
Sbjct: 2570 VQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSS 2629
Query: 454 SKSFDYVNGSQASTS 468
S S + S +S+S
Sbjct: 2630 SSSSSSSSSSSSSSS 2644
>gi|216548091 leucine zipper protein 1 [Homo sapiens]
Length = 1076
Score = 33.5 bits (75), Expect = 0.49
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 328 RREGAEGVNGGEESVNLNDADEGF--SSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAK 385
RR +EG++ G+++ N +AD S LS P S SQ L+ +T
Sbjct: 571 RRSSSEGLSKGKKAANGLEADNSCPNSKAPVLSKYPY----SCRSQENILQGFSTSHKEG 626
Query: 386 DKETASAIKSSESPRDS----VVRKQYVQQP---TDLSVDSVELTPMKKHLSLPAGQVVP 438
+ A+ + SP ++ V++ ++P DL + S+ + P + P
Sbjct: 627 VNQPAAVVMEDSSPHEALRCRVIKSSGREKPDSDDDLDIASLVTAKLVNTTITPEPEPKP 686
Query: 439 KINSLSLIRTASASSSKSFD 458
+ NS +T A + F+
Sbjct: 687 QPNSREKAKTRGAPRTSLFE 706
>gi|216548085 leucine zipper protein 1 [Homo sapiens]
Length = 1076
Score = 33.5 bits (75), Expect = 0.49
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 328 RREGAEGVNGGEESVNLNDADEGF--SSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAK 385
RR +EG++ G+++ N +AD S LS P S SQ L+ +T
Sbjct: 571 RRSSSEGLSKGKKAANGLEADNSCPNSKAPVLSKYPY----SCRSQENILQGFSTSHKEG 626
Query: 386 DKETASAIKSSESPRDS----VVRKQYVQQP---TDLSVDSVELTPMKKHLSLPAGQVVP 438
+ A+ + SP ++ V++ ++P DL + S+ + P + P
Sbjct: 627 VNQPAAVVMEDSSPHEALRCRVIKSSGREKPDSDDDLDIASLVTAKLVNTTITPEPEPKP 686
Query: 439 KINSLSLIRTASASSSKSFD 458
+ NS +T A + F+
Sbjct: 687 QPNSREKAKTRGAPRTSLFE 706
>gi|22035606 mitogen-activated protein kinase kinase kinase kinase 4
isoform 3 [Homo sapiens]
Length = 1212
Score = 33.5 bits (75), Expect = 0.49
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 14/182 (7%)
Query: 350 GFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYV 409
G SSG+S S G+ P S S G +V + ++ + + + P D K+ V
Sbjct: 648 GSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRLENAVKKPED----KKEV 703
Query: 410 QQPTDLSVDSVELTPMKKHLSLPAGQVVP-KINSLSLIRTASASSSKSFDYV--NGSQAS 466
+P V+LT + K L P K+ S S ++ + D V G+ S
Sbjct: 704 FRPLK-PAGEVDLTALAKELRAVEDVRPPHKVTDYSSSSEESGTTDEEDDDVEQEGADES 762
Query: 467 TSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEGKELLSP---GAPLTKQSRSPSFN 523
TS T ++L +N T S++ + E + ++P G + +Q++S S
Sbjct: 763 TSGPEDTRAASSLNLSNG---ETESVKTMIVHDDVESEPAMTPSKEGTLIVRQTQSASST 819
Query: 524 MQ 525
+Q
Sbjct: 820 LQ 821
>gi|22035602 mitogen-activated protein kinase kinase kinase kinase 4
isoform 1 [Homo sapiens]
Length = 1166
Score = 33.5 bits (75), Expect = 0.49
Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 14/182 (7%)
Query: 350 GFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYV 409
G SSG+S S G+ P S S G +V + ++ + + + P D K+ V
Sbjct: 594 GSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRLENAVKKPED----KKEV 649
Query: 410 QQPTDLSVDSVELTPMKKHLSLPAGQVVP-KINSLSLIRTASASSSKSFDYV--NGSQAS 466
+P V+LT + K L P K+ S S ++ + D V G+ S
Sbjct: 650 FRPLK-PAGEVDLTALAKELRAVEDVRPPHKVTDYSSSSEESGTTDEEDDDVEQEGADES 708
Query: 467 TSIGVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEGKELLSP---GAPLTKQSRSPSFN 523
TS T ++L +N T S++ + E + ++P G + +Q++S S
Sbjct: 709 TSGPEDTRAASSLNLSNG---ETESVKTMIVHDDVESEPAMTPSKEGTLIVRQTQSASST 765
Query: 524 MQ 525
+Q
Sbjct: 766 LQ 767
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 33.1 bits (74), Expect = 0.65
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 15/145 (10%)
Query: 338 GEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSE 397
G ES + +D+D SS +S SS + S S+ GS ++ S+ ++S+ SS
Sbjct: 2127 GSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSS 2186
Query: 398 SPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSF 457
S S + +D + + H+ + S++ + T + SF
Sbjct: 2187 SSSSS------SSEESDSDEEEAQKRESTTHMKAYDEE------SVASLSTTQDETQDSF 2234
Query: 458 DYVNGSQASTSIGVGTEGGTNLAAN 482
NG+ S I +GG LAA+
Sbjct: 2235 QMNNGTPESAYI---LQGGYMLAAS 2256
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 32.7 bits (73), Expect = 0.84
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 21/166 (12%)
Query: 321 SIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVAT 380
+ RR R RR +E NG + + ++EG SSG +G KP S LR +
Sbjct: 233 NFRRKRKRR--SEASNGSTVAAGTSKSEEGLSSGL---GSGVGGKPEEESPSTLLRPSHS 287
Query: 381 GRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELT----PMKKHLSLPAGQV 436
+ ++ ++ + + + LSV S T P +HL + Q+
Sbjct: 288 PEPPEGTKSTASSPGGPMLTSTPCLNTFFSSLSSLSVSSSVSTQRALPGSRHLGIQGAQL 347
Query: 437 ------------VPKINSLSLIRTASASSSKSFDYVNGSQASTSIG 470
++L L + S S+ + Y + ASTS G
Sbjct: 348 PSSGVFSPTSISEASADTLQLSNSTSNSTGQRSSYYSPFPASTSGG 393
>gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens]
Length = 506
Score = 32.0 bits (71), Expect = 1.4
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 347 ADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRK 406
A+E +S S S + + SSSS S +T S+ ++S+ S S R + RK
Sbjct: 18 AEEEMASSTSDSGEESDSSSSSSSTSDSSSSSSTSGSSSGSGSSSSSSGSTSSRSRLYRK 77
Query: 407 QYVQQPT 413
+ V +P+
Sbjct: 78 KRVPEPS 84
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 32.0 bits (71), Expect = 1.4
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 323 RRHRWRREGAEGVNGGEESVN---LNDADEGF----SSGASLSSQPIGTKPSSSSQRGSL 375
R +R R G+ ++ +S+ L DA+E SSGA LS + + +P Q
Sbjct: 260 RGYRRVRSGSGSIDDDRDSLPEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDF 319
Query: 376 RKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAG 434
R V G D E + + E+ K+ ++ + V++ E TP S G
Sbjct: 320 RPVDEGEECSDSEGS---HNEEAKEPDKTNKKEGEKTDRVGVEASEETPQTSSSSARPG 375
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 32.0 bits (71), Expect = 1.4
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 323 RRHRWRREGAEGVNGGEESVN---LNDADEGF----SSGASLSSQPIGTKPSSSSQRGSL 375
R +R R G+ ++ +S+ L DA+E SSGA LS + + +P Q
Sbjct: 266 RGYRRVRSGSGSIDDDRDSLPEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDF 325
Query: 376 RKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAG 434
R V G D E + + E+ K+ ++ + V++ E TP S G
Sbjct: 326 RPVDEGEECSDSEGS---HNEEAKEPDKTNKKEGEKTDRVGVEASEETPQTSSSSARPG 381
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 32.0 bits (71), Expect = 1.4
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 323 RRHRWRREGAEGVNGGEESVN---LNDADEGF----SSGASLSSQPIGTKPSSSSQRGSL 375
R +R R G+ ++ +S+ L DA+E SSGA LS + + +P Q
Sbjct: 266 RGYRRVRSGSGSIDDDRDSLPEWCLEDAEEEMGTFDSSGAFLSLKKVQKEPIPEEQEMDF 325
Query: 376 RKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSVELTPMKKHLSLPAG 434
R V G D E + + E+ K+ ++ + V++ E TP S G
Sbjct: 326 RPVDEGEECSDSEGS---HNEEAKEPDKTNKKEGEKTDRVGVEASEETPQTSSSSARPG 381
>gi|169215453 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 31.6 bits (70), Expect = 1.9
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 279 ANAMKNSLPFDAPD--STQEGQKVLKVEVTPTVPRISRTAI-TTASIRRHRWRREGAEGV 335
A ++ SL + PD ST++ +VLK V PTV R+ ++ + TAS+ +
Sbjct: 195 AFSVARSLSWKVPDHKSTRKVSRVLKGGVDPTVSRVLKSGVDPTASL------------L 242
Query: 336 NGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKS 395
GG + G ASL + S + G + R TAS +K
Sbjct: 243 KGGVDPTASRVRKGGVDPTASLLKGGVDPTASRVRKGGVDPTASCVRKGGVDPTASLLKG 302
Query: 396 SESPRDSVVRK 406
P S VRK
Sbjct: 303 GVDPTVSHVRK 313
>gi|169215350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 31.6 bits (70), Expect = 1.9
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Query: 279 ANAMKNSLPFDAPD--STQEGQKVLKVEVTPTVPRISRTAI-TTASIRRHRWRREGAEGV 335
A ++ SL + PD ST++ +VLK V PTV R+ ++ + TAS+ +
Sbjct: 195 AFSVARSLSWKVPDHKSTRKVSRVLKGGVDPTVSRVLKSGVDPTASL------------L 242
Query: 336 NGGEESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKS 395
GG + G ASL + S + G + R TAS +K
Sbjct: 243 KGGVDPTASRVRKGGVDPTASLLKGGVDPTASRVRKGGVDPTASRVRKGGVDPTASLLKG 302
Query: 396 SESPRDSVVRK 406
P S VRK
Sbjct: 303 GVDPTVSHVRK 313
>gi|146232000 checkpoint suppressor 1 isoform 1 [Homo sapiens]
Length = 490
Score = 31.6 bits (70), Expect = 1.9
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 17/162 (10%)
Query: 291 PDSTQEGQKVLK---------VEVTPT-VPRISRTAITTASIRRHRWRREGAEGVNGG-E 339
P Q G +VL + +TP V R IT+ +R G+ V+G +
Sbjct: 273 PGVIQNGARVLSRGLFPGVRPLPITPIGVTAAMRNGITSCRMRTESEPSCGSPVVSGDPK 332
Query: 340 ESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKE-TASAIKSSES 398
E N + A + S +S I SSSS + AT S + E + + +S ES
Sbjct: 333 EDHNYSSAKSSNARSTSPTSDSIS---SSSSSADDHYEFATKGSQEGSEGSEGSFRSHES 389
Query: 399 PRDSVV--RKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVP 438
P D+ RK ++P D DS + KK + VP
Sbjct: 390 PSDTEEDDRKHSQKEPKDSLGDSGYASQHKKRQHFAKARKVP 431
>gi|51093865 checkpoint suppressor 1 isoform 2 [Homo sapiens]
Length = 468
Score = 31.6 bits (70), Expect = 1.9
Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 17/162 (10%)
Query: 291 PDSTQEGQKVLK---------VEVTPT-VPRISRTAITTASIRRHRWRREGAEGVNGG-E 339
P Q G +VL + +TP V R IT+ +R G+ V+G +
Sbjct: 251 PGVIQNGARVLSRGLFPGVRPLPITPIGVTAAMRNGITSCRMRTESEPSCGSPVVSGDPK 310
Query: 340 ESVNLNDADEGFSSGASLSSQPIGTKPSSSSQRGSLRKVATGRSAKDKE-TASAIKSSES 398
E N + A + S +S I SSSS + AT S + E + + +S ES
Sbjct: 311 EDHNYSSAKSSNARSTSPTSDSIS---SSSSSADDHYEFATKGSQEGSEGSEGSFRSHES 367
Query: 399 PRDSVV--RKQYVQQPTDLSVDSVELTPMKKHLSLPAGQVVP 438
P D+ RK ++P D DS + KK + VP
Sbjct: 368 PSDTEEDDRKHSQKEPKDSLGDSGYASQHKKRQHFAKARKVP 409
>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
Length = 4169
Score = 31.2 bits (69), Expect = 2.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 15 EFKALPDTQITSYAATLHRKKTLVPALYKVIQDS-NNELLEPVCHQLFELYRSSEVRLKR 73
E K LPDT+ + +HRKKT+ + ++S + E CH FE S R +
Sbjct: 3423 EMKNLPDTKAITQKEEIHRKKTVPEEAWPNNKESLQINIEESECHSEFENTTRSVFRSAK 3482
Query: 74 F 74
F
Sbjct: 3483 F 3483
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,047,010
Number of Sequences: 37866
Number of extensions: 821488
Number of successful extensions: 3021
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2944
Number of HSP's gapped (non-prelim): 108
length of query: 530
length of database: 18,247,518
effective HSP length: 107
effective length of query: 423
effective length of database: 14,195,856
effective search space: 6004847088
effective search space used: 6004847088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.