Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 28274701
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28274701 zinc finger protein 511 [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28274701 zinc finger protein 511 [Homo sapiens] 531 e-151
gi|166063995 transcription factor IIIA [Homo sapiens] 43 2e-04
gi|116014328 zinc finger protein 143 [Homo sapiens] 42 4e-04
gi|21361146 zinc finger protein 76 (expressed in testis) [Homo s... 41 9e-04
gi|156119609 YY2 transcription factor [Homo sapiens] 39 0.004
gi|40807465 zinc finger protein 341 [Homo sapiens] 38 0.007
gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens] 37 0.013
gi|110431364 GLIS family zinc finger 2 [Homo sapiens] 37 0.013
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 37 0.016
gi|210031154 zinc finger protein 541 [Homo sapiens] 37 0.021
gi|94721327 basonuclin 2 [Homo sapiens] 36 0.037
gi|126723501 zinc finger protein (C2H2 type) 277 [Homo sapiens] 36 0.037
gi|150170718 zinc finger protein 292 [Homo sapiens] 36 0.037
gi|4507955 YY1 transcription factor [Homo sapiens] 35 0.048
gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens] 35 0.048
gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens] 35 0.048
gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens] 35 0.048
gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens] 35 0.048
gi|5729790 CCCTC-binding factor [Homo sapiens] 35 0.081
gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens] 35 0.081
gi|71480169 zinc finger protein 406 isoform TR-ZFAT [Homo sapiens] 35 0.081
gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens] 34 0.11
gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens] 34 0.11
gi|237512940 early growth response 4 [Homo sapiens] 34 0.11
gi|89179323 zinc finger protein 42 [Homo sapiens] 34 0.11
gi|157276588 basonuclin 1 [Homo sapiens] 34 0.11
gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens] 33 0.18
gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens] 33 0.18
gi|112734859 zinc finger protein 654 [Homo sapiens] 33 0.18
gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens] 33 0.24
>gi|28274701 zinc finger protein 511 [Homo sapiens]
Length = 252
Score = 531 bits (1369), Expect = e-151
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MQLPPALCARLAAGPGAAEPLPVERDPAAGAAPFRFVARPVRFPREHQFFEDGDVQRHLY 60
MQLPPALCARLAAGPGAAEPLPVERDPAAGAAPFRFVARPVRFPREHQFFEDGDVQRHLY
Sbjct: 1 MQLPPALCARLAAGPGAAEPLPVERDPAAGAAPFRFVARPVRFPREHQFFEDGDVQRHLY 60
Query: 61 LQDVIMQVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGH 120
LQDVIMQVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGH
Sbjct: 61 LQDVIMQVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGH 120
Query: 121 LLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRFDKP 180
LLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRFDKP
Sbjct: 121 LLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRFDKP 180
Query: 181 KKSRSPASAEAPGDSGERSEGEAMEICSEPVAASPAPAGERRIYRHRIPSTICFGQGAAR 240
KKSRSPASAEAPGDSGERSEGEAMEICSEPVAASPAPAGERRIYRHRIPSTICFGQGAAR
Sbjct: 181 KKSRSPASAEAPGDSGERSEGEAMEICSEPVAASPAPAGERRIYRHRIPSTICFGQGAAR 240
Query: 241 GFKSNKKKTKQC 252
GFKSNKKKTKQC
Sbjct: 241 GFKSNKKKTKQC 252
>gi|166063995 transcription factor IIIA [Homo sapiens]
Length = 365
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 28/123 (22%)
Query: 49 FFEDGDVQRHLYLQDVIMQVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN- 107
F D + RH+ + EKP F C GC Q F+ + + H+ H N
Sbjct: 81 FIRDYHLSRHI--------LTHTGEKP----FVCAANGCDQKFNTKSNLKKHFERKHENQ 128
Query: 108 ----VCSF--CKRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDR 161
+CSF CK+ F L H Q + +++C EGC + F +
Sbjct: 129 QKQYICSFEDCKKTFKKHQQLKIH---------QCQHTNEPLFKCTQEGCGKHFASPSKL 179
Query: 162 KDH 164
K H
Sbjct: 180 KRH 182
Score = 36.2 bits (82), Expect = 0.028
Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 69 ADVPEKPRVPA-FACQVAGCCQVFDALDDYEHHYHTLHGN---VCSF--CKRAFPSGHLL 122
A P +P +P F C C + + H G VC + C +AF + L
Sbjct: 28 APTPPRPALPRRFICSFPDCSANYSKAWKLDAHLCKHTGERPFVCDYEGCGKAFIRDYHL 87
Query: 123 DAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
HIL + + C GC +KF T + K H R H
Sbjct: 88 SRHILT---------HTGEKPFVCAANGCDQKFNTKSNLKKHFERKH 125
Score = 28.1 bits (61), Expect = 7.6
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGNVC-SFCKRAFPSGHLLDAHILEWH------ 130
P F C GC + F + + H G VC C + L H+ E H
Sbjct: 160 PLFKCTQEGCGKHFASPSKLKRHAKAHEGYVCQKGCSFVAKTWTELLKHVRETHKEEILC 219
Query: 131 ----------DSLFQIL---SERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
D L Q + + +D+ +C EGC + T + + H++ H
Sbjct: 220 EVCRKTFKRKDYLKQHMKTHAPERDVCRCPREGCGRTYTTVFNLQSHILSFH 271
>gi|116014328 zinc finger protein 143 [Homo sapiens]
Length = 638
Score = 42.4 bits (98), Expect = 4e-04
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 15/157 (9%)
Query: 59 LYLQDVIMQVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN---VCSF--CK 113
+ LQ +V ++ AF C+ GC +++ + H + G+ C C
Sbjct: 216 IVLQGHATRVTAKSQQSGEKAFRCEYDGCGKLYTTAHHLKVHERSHTGDRPYQCEHAGCG 275
Query: 114 RAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPA 173
+AF +G+ L +H+ H + Y+C + CT+ FKTS D + H +R H
Sbjct: 276 KAFATGYGLKSHV-RTHTG--------EKPYRCSEDNCTKSFKTSGDLQKH-IRTHTGER 325
Query: 174 DFRFDKPKKSRSPASAEAPGDSGERSEGEAMEICSEP 210
F+ RS ++ GE C+EP
Sbjct: 326 PFKCPFEGCGRSFTTSNIRKVHVRTHTGERPYYCTEP 362
Score = 32.3 bits (72), Expect = 0.40
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 73 EKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN---VCSF--CKRAFPSGHLLDAHIL 127
EKP + C C + F D + H T G C F C R+F + ++ H+
Sbjct: 294 EKP----YRCSEDNCTKSFKTSGDLQKHIRTHTGERPFKCPFEGCGRSFTTSNIRKVHVR 349
Query: 128 EWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
ER Y C GC F ++ + K+H VR+H
Sbjct: 350 TH-------TGERP--YYCTEPGCGRAFASATNYKNH-VRIH 381
>gi|21361146 zinc finger protein 76 (expressed in testis) [Homo
sapiens]
Length = 570
Score = 41.2 bits (95), Expect = 9e-04
Identities = 44/181 (24%), Positives = 65/181 (35%), Gaps = 28/181 (15%)
Query: 79 AFACQVAGCCQVFDALDDYEHHYHTLHGNV---CSF--CKRAFPSGHLLDAHIL------ 127
AF C GC +++ + H G+ C F C +AF +G+ L +H+
Sbjct: 164 AFRCGYKGCGRLYTTAHHLKVHERAHTGDRPYRCDFPSCGKAFATGYGLKSHVRTHTGEK 223
Query: 128 ------EWHDSLFQILSERQDM---------YQCLVEGCTEKFKTSRDRKDHMVRMHLYP 172
E F+ + Q +QC EGC F TS RK H VR H
Sbjct: 224 PYKCPEELCSKAFKTSGDLQKHVRTHTGERPFQCPFEGCGRSFTTSNIRKVH-VRTHTGE 282
Query: 173 ADFRFDKPKKSRSPASAEAPGDSGERSEGEAMEICSEPVAASPAPAGERRIYRHRIPSTI 232
+ +P R SA + GE +C+ P +Y+H + T
Sbjct: 283 RPYTCPEPHCGRGFTSATNYKNHVRIHTGEKPYVCTVP-GCGKRFTEYSSLYKHHVVHTH 341
Query: 233 C 233
C
Sbjct: 342 C 342
>gi|156119609 YY2 transcription factor [Homo sapiens]
Length = 372
Score = 38.9 bits (89), Expect = 0.004
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 82 CQVAGCCQVFDALDDYEHHYHTLHG---NVCSFCKRAFPSGHLLDAHILEWHDSLFQILS 138
C +GC ++F H H +HG +VC+ C +AF L H Q++
Sbjct: 256 CSYSGCEKMFRDYAAMRKHLH-IHGPRVHVCAECGKAFLESSKLRRH---------QLVH 305
Query: 139 ERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
+ +QC EGC ++F + + H+ R+H
Sbjct: 306 TGEKPFQCTFEGCGKRFSLDFNLRTHL-RIH 335
>gi|40807465 zinc finger protein 341 [Homo sapiens]
Length = 847
Score = 38.1 bits (87), Expect = 0.007
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 80 FACQVAGCCQVFDALDDYEHHYHTLHGNV---CSFCKRAFPSGHLLDAHILEWHDSLFQI 136
+ C V C Q F LD + H + + C C + FPS L D + ++ SL
Sbjct: 466 YKCVVKSCAQTFPKLDTFLEHIKSHQEELSYRCHLCGKDFPS--LYDLGVHQYSHSLLPQ 523
Query: 137 LSERQD--MYQCLVEGCTEKFKTSRDRKDHM-VRMHLYP 172
S ++D +Y+C+ C K+ T + H+ H +P
Sbjct: 524 HSPKKDNAVYKCV--KCVNKYSTPEALEHHLQTATHNFP 560
Score = 28.9 bits (63), Expect = 4.5
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 22/119 (18%)
Query: 54 DVQRHLYLQDVIMQVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTL-HGNVCSFC 112
D+ H Y ++ Q P+ + C + + EHH T H C C
Sbjct: 510 DLGVHQYSHSLLPQ-----HSPKKDNAVYKCVKCVNKYSTPEALEHHLQTATHNFPCPHC 564
Query: 113 KRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLY 171
++ FP L H L H S ++C V C + F R++H +++H +
Sbjct: 565 QKVFPCERYLRRH-LPTHGS--------GGRFKCQV--CKKFF-----RREHYLKLHAH 607
Score = 27.7 bits (60), Expect = 9.9
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 109 CSFCKRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRM 168
CS+C ++F L HI + +QC+ C F + K HM
Sbjct: 317 CSYCDKSFTKNFDLQQHIRS---------HTGEKPFQCI--ACGRAFAQKSNVKKHMQTH 365
Query: 169 HLYPADFRFDKPKKSRSPASAEAPGDSGERSEGEAMEICSEPVAASPAP 217
++P SR+ + + + R E E +P+ +P P
Sbjct: 366 KVWPPG--HSGGTVSRNSVTVQVMALNPSRQEDEESTGLGQPLPGAPQP 412
Score = 27.7 bits (60), Expect = 9.9
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 17/76 (22%)
Query: 108 VCSFCKRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHM-- 165
+C FC F + L +H+ + + + +Y+C+V+ C + F +H+
Sbjct: 439 LCQFCPSKFSTYFQLKSHMTQ---------HKNEQVYKCVVKSCAQTFPKLDTFLEHIKS 489
Query: 166 ------VRMHLYPADF 175
R HL DF
Sbjct: 490 HQEELSYRCHLCGKDF 505
>gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]
Length = 1580
Score = 37.4 bits (85), Expect = 0.013
Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 50/183 (27%)
Query: 73 EKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN---VCSF--CKRAFPSGHLLDAHIL 127
EKP C GC + + L++ + H + G VC C +AF + H
Sbjct: 543 EKPH----KCTFEGCTKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQN 598
Query: 128 EWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH-------------LYPAD 174
H + + Y C + GCT+++ + H+ +H ++P
Sbjct: 599 RTHSN--------EKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRGDIHP-- 648
Query: 175 FRFDKPKKSRSPASAEAPGDSGERSEGEAMEI-----------------CSEPVAASPAP 217
R P+ S S + + +PG + + GE ++ +P+ + P+P
Sbjct: 649 -RPPPPRDSGSHSQSRSPGRPTQGALGEQQDLSNTTSKREECLQVKTVKAEKPMTSQPSP 707
Query: 218 AGE 220
G+
Sbjct: 708 GGQ 710
Score = 32.3 bits (72), Expect = 0.40
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 82 CQVAGCCQVFDALDDYEHHYHT--LHGNV---------CSFCKRAFPSGHLLDAHILEWH 130
C GC + FD + HH + +HG CS ++ F + ++L H+
Sbjct: 482 CHWEGCAREFDTQEQLVHHINNDHIHGEKKEFVCRWLDCSREQKPFKAQYMLVVHMRR-- 539
Query: 131 DSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHM 165
+ ++C EGCT+ + + K H+
Sbjct: 540 -------HTGEKPHKCTFEGCTKAYSRLENLKTHL 567
>gi|110431364 GLIS family zinc finger 2 [Homo sapiens]
Length = 524
Score = 37.4 bits (85), Expect = 0.013
Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 26/174 (14%)
Query: 61 LQDVIMQVADVPEKPRVPA-FACQVAGCCQV---FDALDDYEHHYHTLHGNV----CSFC 112
LQD++ V D KP A + C GC + F+A H T H N C C
Sbjct: 182 LQDLVDHVNDYHVKPEKDAGYCCHWEGCARHGRGFNARYKMLIHIRT-HTNEKPHRCPTC 240
Query: 113 KRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYP 172
++F L H + Y C EGC +++ S DR H R H
Sbjct: 241 SKSFSRLENLKIHNRS---------HTGEKPYVCPYEGCNKRYSNSSDRFKH-TRTHYVD 290
Query: 173 ADFRFDKP---KKSRSPAS----AEAPGDSGERSEGEAMEICSEPVAASPAPAG 219
+ P K+ P+S +A G + E +++ P PAP G
Sbjct: 291 KPYYCKMPGCHKRYTDPSSLRKHIKAHGHFVSHEQQELLQLRPPPKPPLPAPDG 344
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 37.0 bits (84), Expect = 0.016
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 14/91 (15%)
Query: 80 FACQVAGCCQVFDALDDYEHHYHTLHGNV---CSF--CKRAFPSGHLLDAHILEWHDSLF 134
F C+ GC + F L D H T G C C +AF + H L H+ H
Sbjct: 229 FNCESEGCSKYFTTLSDLRKHIRTHTGEKPFRCDHDGCGKAFAASHHLKTHV-RTHTG-- 285
Query: 135 QILSERQDMYQCLVEGCTEKFKTSRDRKDHM 165
+ + C GC + F T K HM
Sbjct: 286 ------ERPFFCPSNGCEKTFSTQYSLKSHM 310
Score = 34.7 bits (78), Expect = 0.081
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 69 ADVPEKPR--VPAFACQVAGCCQVFDALDDYEHHYHTLHGN---VCS--FCKRAFPSGHL 121
++ PE R V + C GC + + + H T G VC+ C +AF + +
Sbjct: 127 SECPETKRKEVKRYQCTFEGCPRTYSTAGNLRTHQKTHRGEYTFVCNQEGCGKAFLTSYS 186
Query: 122 LDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
L H+ + ++ ++C V+GC + F T K H R+H
Sbjct: 187 LRIHVR---------VHTKEKPFECDVQGCEKAFNTLYRLKAHQ-RLH 224
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 36.6 bits (83), Expect = 0.021
Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 28/167 (16%)
Query: 75 PRVPAFACQVAGCCQVFDALDDYEHHYHTL---HGNVCSFCKRAFPSGHLLDAHILEWHD 131
P+ P C + G +VF + HY T +VC C +AF L H+L
Sbjct: 135 PQNPLLDCSLCG--KVFSSASSLSKHYLTHSQERKHVCKICSKAFKRQDHLTGHML---- 188
Query: 132 SLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRFDKPKKSRSPASAEA 191
++ + C+ +GC++ + R + H H +P EA
Sbjct: 189 -----THQKTKPFVCIEQGCSKSYCDYRSLRRHYEVHH--------GLCILKEAPPEEEA 235
Query: 192 PGDSGERSEG------EAMEICSEPVAASPAPAGERRIYRHRIPSTI 232
GDS E ++ P A SP R RI S+I
Sbjct: 236 CGDSPHAHESAGQPPPSSLRSLVPPEARSPGSLLPHRDLLRRIVSSI 282
>gi|94721327 basonuclin 2 [Homo sapiens]
Length = 1099
Score = 35.8 bits (81), Expect = 0.037
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 108 VCSFCKRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVR 167
+C CK++F S + + H H ++M+ C V GC F + R R H
Sbjct: 834 ICYVCKKSFKSSYSVKLHYRNVH---------LKEMHVCTVAGCNAAFPSRRSRDRHSAN 884
Query: 168 MHLY 171
++L+
Sbjct: 885 INLH 888
Score = 30.0 bits (66), Expect = 2.0
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 106 GNVCSFCKRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHM 165
G +C+ C + + + L H H ++M++C V GC F + R R H
Sbjct: 1034 GIMCNICHKMYSNKGTLRVHYKTVH---------LREMHKCKVPGCNMMFSSVRSRNRHS 1084
Query: 166 VRMHLY 171
+L+
Sbjct: 1085 QNPNLH 1090
>gi|126723501 zinc finger protein (C2H2 type) 277 [Homo sapiens]
Length = 450
Score = 35.8 bits (81), Expect = 0.037
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 19/90 (21%)
Query: 92 DALDDYEHHYHTLHGNVCSFCKRAFPSGHLLDAHILEWHD-SLFQILSE----------- 139
D D+E H + VC FC++ + L H+ + H+ L +I SE
Sbjct: 290 DDWSDWEEHPASA---VCLFCEKQAETIEKLYVHMEDAHEFDLLKIKSELGLNFYQQVKL 346
Query: 140 ----RQDMYQCLVEGCTEKFKTSRDRKDHM 165
R+ ++QC GC KFK+ D + HM
Sbjct: 347 VNFIRRQVHQCRCYGCHVKFKSKADLRTHM 376
>gi|150170718 zinc finger protein 292 [Homo sapiens]
Length = 2723
Score = 35.8 bits (81), Expect = 0.037
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 74 KPRVPAFACQVAGCCQVFDALDDYEHHYHTLHG-------------NVCSF------CKR 114
K + F CQV+ C ++F A+ HY LH +V F CK
Sbjct: 2166 KQTLKEFRCQVSDCSRIFQAITGLIQHYMKLHEMTPEEIESMTASVDVGKFPCDQLECKS 2225
Query: 115 AFPSGHLLDAHILEWHD-SLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
+F + H+ H L +E +Y+C EGC + T + H+ H
Sbjct: 2226 SFTTYLNYVVHLEADHGIGLRASKTEEDGVYKCDCEGCDRIYATRSNLLRHIFNKH 2281
Score = 31.6 bits (70), Expect = 0.69
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 71 VPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLH 105
VP K V F+CQV GC + +++ H T H
Sbjct: 1089 VPPKAPVQKFSCQVEGCTRTYNSSQSIGKHMKTAH 1123
Score = 28.1 bits (61), Expect = 7.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 144 YQCLVEGCTEKFKTSRDRKDHMVRMH--LYPADFRFDKPKKSRSPASAEAPGD 194
+ C VEGCT + +S+ HM H Y A K KK + + P +
Sbjct: 1098 FSCQVEGCTRTYNSSQSIGKHMKTAHPDQYAAFKMQRKSKKGQKANNLNTPNN 1150
>gi|4507955 YY1 transcription factor [Homo sapiens]
Length = 414
Score = 35.4 bits (80), Expect = 0.048
Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 25/125 (20%)
Query: 66 MQVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHG---NVCSFCKRAFPSGHLL 122
M+ + E AC GC ++F H HT HG +VC+ C +AF L
Sbjct: 282 MKPRKIKEDDAPRTIACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKL 340
Query: 123 DAH-ILEWHDSLFQILSER--------------------QDMYQCLVEGCTEKFKTSRDR 161
H ++ + FQ E Y C +GC +KF S +
Sbjct: 341 KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNL 400
Query: 162 KDHMV 166
K H++
Sbjct: 401 KSHIL 405
>gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens]
Length = 1156
Score = 35.4 bits (80), Expect = 0.048
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 87 CCQVFDALDDYEHHYHTLHGN----VCSFCKRAFPSGHLLDAHILEWH------------ 130
C + FD LD + H +H N C CK+ FP + H+ +H
Sbjct: 589 CPESFDRLDLLKDHV-AIHINDGYFTCPTCKKRFPDFIQVKKHVRSFHSEKIYQCTECDK 647
Query: 131 -----DSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
D L + D L C ++FK ++HM RMH
Sbjct: 648 AFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMH 691
>gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens]
Length = 1023
Score = 35.4 bits (80), Expect = 0.048
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 87 CCQVFDALDDYEHHYHTLHGN----VCSFCKRAFPSGHLLDAHILEWH------------ 130
C + FD LD + H +H N C CK+ FP + H+ +H
Sbjct: 503 CPESFDRLDLLKDHV-AIHINDGYFTCPTCKKRFPDFIQVKKHVRSFHSEKIYQCTECDK 561
Query: 131 -----DSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
D L + D L C ++FK ++HM RMH
Sbjct: 562 AFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMH 605
>gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens]
Length = 1160
Score = 35.4 bits (80), Expect = 0.048
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 87 CCQVFDALDDYEHHYHTLHGN----VCSFCKRAFPSGHLLDAHILEWH------------ 130
C + FD LD + H +H N C CK+ FP + H+ +H
Sbjct: 593 CPESFDRLDLLKDHV-AIHINDGYFTCPTCKKRFPDFIQVKKHVRSFHSEKIYQCTECDK 651
Query: 131 -----DSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
D L + D L C ++FK ++HM RMH
Sbjct: 652 AFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMH 695
>gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens]
Length = 1061
Score = 35.4 bits (80), Expect = 0.048
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 22/104 (21%)
Query: 87 CCQVFDALDDYEHHYHTLHGN----VCSFCKRAFPSGHLLDAHILEWH------------ 130
C + FD LD + H +H N C CK+ FP + H+ +H
Sbjct: 507 CPESFDRLDLLKDHV-AIHINDGYFTCPTCKKRFPDFIQVKKHVRSFHSEKIYQCTECDK 565
Query: 131 -----DSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
D L + D L C ++FK ++HM RMH
Sbjct: 566 AFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMH 609
>gi|5729790 CCCTC-binding factor [Homo sapiens]
Length = 727
Score = 34.7 bits (78), Expect = 0.081
Identities = 41/139 (29%), Positives = 52/139 (37%), Gaps = 36/139 (25%)
Query: 109 CSFCKRAFPSGHLLDAHILEWHDSLF-----------QILSERQDMYQ----CL----VE 149
CS C + F LLD H +HD F + + R M + C VE
Sbjct: 525 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 584
Query: 150 GCT--EKFKTSRDRKDHMVRMHLYPADFRFDKPKKSRSPASAEAPGDSGERSEGEAMEIC 207
G E K+ R RK M K + S +AE D E E A+EI
Sbjct: 585 GENGGETKKSKRGRKRKM-----------RSKKEDSSDSENAEPDLDDNEDEEEPAVEIE 633
Query: 208 SE----PVAASPAPAGERR 222
E PV +P PA +RR
Sbjct: 634 PEPEPQPVTPAPPPAKKRR 652
>gi|46487911 zinc finger protein 406 isoform ZFAT-1 [Homo sapiens]
Length = 1243
Score = 34.7 bits (78), Expect = 0.081
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 100 HYHTLHGNV---CSFCKRAFPSGHLLDAHILEWHDSLFQILSE-------------RQDM 143
H +H + C FCK+ + L HI + HD + + E RQ +
Sbjct: 344 HIERVHKKIKQHCRFCKKKYSDVKNLIKHIRDAHDPQDKKVKEALDELCLMTREGKRQLL 403
Query: 144 YQCLVEGCTEKFKTSRDRKDHMV 166
Y C + C KFK DR HM+
Sbjct: 404 YDCHI--CERKFKNELDRDRHML 424
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 80 FACQVAGC-CQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGHLLDAHILEWHDSLFQILS 138
FAC++ G + AL+ + + ++ VC+ C++ F S L HI E H + + L
Sbjct: 432 FACELCGHGATKYQALELHVRKHPFVY--VCAVCRKKFVSSIRLRTHIKEVHGAAQEALV 489
Query: 139 ERQDMYQ--CLVE 149
+ Q CL+E
Sbjct: 490 FTSSINQSFCLLE 502
>gi|71480169 zinc finger protein 406 isoform TR-ZFAT [Homo sapiens]
Length = 846
Score = 34.7 bits (78), Expect = 0.081
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 100 HYHTLHGNV---CSFCKRAFPSGHLLDAHILEWHDSLFQILSE-------------RQDM 143
H +H + C FCK+ + L HI + HD + + E RQ +
Sbjct: 332 HIERVHKKIKQHCRFCKKKYSDVKNLIKHIRDAHDPQDKKVKEALDELCLMTREGKRQLL 391
Query: 144 YQCLVEGCTEKFKTSRDRKDHMV 166
Y C + C KFK DR HM+
Sbjct: 392 YDCHI--CERKFKNELDRDRHML 412
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 80 FACQVAGC-CQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGHLLDAHILEWHDSLFQILS 138
FAC++ G + AL+ + + ++ VC+ C++ F S L HI E H + + L
Sbjct: 420 FACELCGHGATKYQALELHVRKHPFVY--VCAVCRKKFVSSIRLRTHIKEVHGAAQEALV 477
Query: 139 ERQDMYQ--CLVE 149
+ Q CL+E
Sbjct: 478 FTSSINQSFCLLE 490
>gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens]
Length = 978
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 32/120 (26%)
Query: 82 CQVAGCCQVFDALDDYEHHYHT-----------LHGNVCSFCKRAFPSGHLLDAHILEW- 129
C+ GC Q FD+ + HH ++ H CS R F + ++L H+
Sbjct: 109 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 168
Query: 130 ----HDSLFQILSER----------------QDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
H F+ + + Y C EGC++ F + DR H R H
Sbjct: 169 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 228
Score = 29.3 bits (64), Expect = 3.4
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 73 EKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN---VCSF--CKRAFPSGHLLDAHIL 127
EKP C GC + + L++ + H + G +C C +AF + H
Sbjct: 170 EKPH----KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 225
Query: 128 EWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
H + + Y C + GCT+++ + H+ +H
Sbjct: 226 RTHSN--------EKPYVCKLPGCTKRYTDPSSLRKHVKTVH 259
>gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]
Length = 1106
Score = 34.3 bits (77), Expect = 0.11
Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 32/120 (26%)
Query: 82 CQVAGCCQVFDALDDYEHHYHT-----------LHGNVCSFCKRAFPSGHLLDAHILEW- 129
C+ GC Q FD+ + HH ++ H CS R F + ++L H+
Sbjct: 237 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 296
Query: 130 ----HDSLFQILSER----------------QDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
H F+ + + Y C EGC++ F + DR H R H
Sbjct: 297 GEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 356
Score = 29.3 bits (64), Expect = 3.4
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 73 EKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGN---VCSF--CKRAFPSGHLLDAHIL 127
EKP C GC + + L++ + H + G +C C +AF + H
Sbjct: 298 EKPH----KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 353
Query: 128 EWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
H + + Y C + GCT+++ + H+ +H
Sbjct: 354 RTHSN--------EKPYVCKLPGCTKRYTDPSSLRKHVKTVH 387
>gi|237512940 early growth response 4 [Homo sapiens]
Length = 589
Score = 34.3 bits (77), Expect = 0.11
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 74 KPRVPAFACQVAGCCQVFDALDDYEHH--YHTLHGNV-CSFCKRAFPSGHLLDAHILEWH 130
+P AFAC V C + F D+ H HT H C C R F L H+ H
Sbjct: 477 RPHAKAFACPVESCVRSFARSDELNRHLRIHTGHKPFQCRICLRNFSRSDHLTTHV-RTH 535
Query: 131 DSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHL 170
+ + C V C +F S ++K H ++HL
Sbjct: 536 TG--------EKPFACDV--CGRRFARSDEKKRHS-KVHL 564
>gi|89179323 zinc finger protein 42 [Homo sapiens]
Length = 310
Score = 34.3 bits (77), Expect = 0.11
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 73 EKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHG---NVCSFCKRAFPSGHLLDAHILEW 129
E + A AC +GC + H +HG +VC+ C +AF L H L
Sbjct: 181 EYDSLSAIACPQSGCTRKLRNRAALRKHL-LIHGPRDHVCAECGKAFVESSKLKRHFL-- 237
Query: 130 HDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMH 169
+ + ++C EGC ++F + + H VR+H
Sbjct: 238 -------VHTGEKPFRCTFEGCGKRFSLDFNLRTH-VRIH 269
>gi|157276588 basonuclin 1 [Homo sapiens]
Length = 994
Score = 34.3 bits (77), Expect = 0.11
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 109 CSFCKRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRM 168
C CK+ F + + H H ++M+ C VEGC F + R R H +
Sbjct: 722 CDICKKTFKNACSVKIHHKNMHV---------KEMHTCTVEGCNATFPSRRSRDRHSSNL 772
Query: 169 HLY 171
+L+
Sbjct: 773 NLH 775
>gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens]
Length = 562
Score = 33.5 bits (75), Expect = 0.18
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 172 PADFRFDKPKKSRSPASAEAPGDSGERSEGEA---------MEICSEPVAASPAPAG 219
P F F K K +SPA + DSGE GEA E E PAPAG
Sbjct: 14 PPVFVFQKDKGQKSPAEQKNLSDSGEEPRGEAEAPHHGTGHPESAGEHALEPPAPAG 70
>gi|6466466 RAN binding protein 3 isoform RANBP3-d [Homo sapiens]
Length = 567
Score = 33.5 bits (75), Expect = 0.18
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 172 PADFRFDKPKKSRSPASAEAPGDSGERSEGEA---------MEICSEPVAASPAPAG 219
P F F K K +SPA + DSGE GEA E E PAPAG
Sbjct: 14 PPVFVFQKDKGQKSPAEQKNLSDSGEEPRGEAEAPHHGTGHPESAGEHALEPPAPAG 70
>gi|112734859 zinc finger protein 654 [Homo sapiens]
Length = 581
Score = 33.5 bits (75), Expect = 0.18
Identities = 30/113 (26%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 80 FACQVAGCCQVFDALDDYEHHYHTLHG---NV-----------CSFCKRAF-PSGHLLDA 124
F C GC ++F + H T+H NV C FC+R F S H +D
Sbjct: 199 FKCPALGCVRIFKRIGFLNKHAMTVHPTDLNVRQTVMKWSKGKCKFCQRQFEDSQHFIDH 258
Query: 125 HILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRF 177
L H ++Y CL C E FK H ++ A F
Sbjct: 259 --LNRH--------SYPNVYFCLHFNCNESFKLPFQLAQHTKSHRIFQAQCSF 301
>gi|28376656 zinc finger, X-linked, duplicated B [Homo sapiens]
Length = 803
Score = 33.1 bits (74), Expect = 0.24
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 80 FACQVAGCCQVFDALDDYEHH---YHTLHGNVCSFCKRAFPSGHLLDAHILEWHDSLFQI 136
F C GC + F + + + H + + C C+ +FP+ L AH S F
Sbjct: 334 FGCPAEGCGKSFTTVYNLKAHMKGHEQENSFKCEVCEESFPTQAKLSAH----QRSHF-- 387
Query: 137 LSERQDMYQCLVEGCTEKFKT 157
E + YQC GC + F T
Sbjct: 388 --EPERPYQCAFSGCKKTFIT 406
Score = 30.8 bits (68), Expect = 1.2
Identities = 29/131 (22%), Positives = 42/131 (32%), Gaps = 32/131 (24%)
Query: 80 FACQVAGCCQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGHLLDAHILEWHDSLFQILSE 139
F C VAGCC F A H HL D W
Sbjct: 514 FVCPVAGCCARFSARSSLYIH----------------SKKHLQDVDT--WKS-------- 547
Query: 140 RQDMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRFD-KPKKSRSPASAEAPGDSGER 198
+C + C + F + K HMV+ H D + S +P+S +
Sbjct: 548 -----RCPISSCNKLFTSKHSMKTHMVKRHKVGQDLLAQLEAANSLTPSSELTSQRQNDL 602
Query: 199 SEGEAMEICSE 209
S+ E + + S+
Sbjct: 603 SDAEIVSLFSD 613
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 112 CKRAFPSGHLLDAHILEWHDSLFQILSERQDMYQCLVEGCTEKFKTSRDRKDHM 165
C + F H L H+L H S S+ Q ++C + GC F TS K H+
Sbjct: 278 CGQTFAKKHQLKVHLLT-HSS-----SQGQRPFKCPLGGCGWTFTTSYKLKRHL 325
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,612,477
Number of Sequences: 37866
Number of extensions: 595433
Number of successful extensions: 2762
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 2502
Number of HSP's gapped (non-prelim): 345
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.