Guide to the Human Genome
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Name: HTR1D Sequence: fasta or formatted (377aa) NCBI GI: 4504535
Description:

5-hydroxytryptamine (serotonin) receptor 1D

Referenced in:

Common Drug Targets
Serotonin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         37           2
 C cysteine            2.9         11           2
 D aspartate           2.7         10           1
 E glutamate           3.2         12           2
 F phenylalanine       4.5         17           2
 G glycine             3.7         14           1
 H histidine           2.7         10           1
 I isoleucine         10.9         41           2
 K lysine              3.2         12           1
 L leucine            12.5         47           2
 M methionine          1.1          4           1
 N asparagine          3.7         14           1
 P proline             4.2         16           2
 Q glutamine           2.4          9           1
 R arginine            5.0         19           2
 S serine             10.1         38           2
 T threonine           7.4         28           2
 V valine              4.5         17           2
 W tryptophan          2.4          9           1
 Y tyrosine            3.2         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   5-hydroxytryptamine (serotonin) receptor 1D 
HTR1B                 0.614   5-hydroxytryptamine (serotonin) receptor 1B 
HTR1E                 0.409   5-hydroxytryptamine (serotonin) receptor 1E 
HTR1F                 0.408   5-hydroxytryptamine (serotonin) receptor 1F 
HTR1A                 0.361   5-hydroxytryptamine (serotonin) receptor 1A 
HTR7                  0.266   5-hydroxytryptamine receptor 7 isoform b 
HTR7                  0.266   5-hydroxytryptamine receptor 7 isoform d 
HTR7                  0.266   5-hydroxytryptamine receptor 7 isoform a 
HTR5A                 0.257   5-hydroxytryptamine receptor 5A 
ADRA1A                0.253   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.253   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.253   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.253   alpha-1A-adrenergic receptor isoform 3 
ADRA1B                0.250   alpha-1B-adrenergic receptor 
DRD3                  0.234   dopamine receptor D3 isoform a 
DRD1                  0.234   dopamine receptor D1 
DRD3                  0.232   dopamine receptor D3 isoform e 
DRD2                  0.229   dopamine receptor D2 isoform short 
ADRA1D                0.228   alpha-1D-adrenergic receptor 
ADRB2                 0.225   adrenergic, beta-2-, receptor, surface 
ADRB1                 0.217   beta-1-adrenergic receptor 
HTR2C                 0.209   5-hydroxytryptamine (serotonin) receptor 2C 
DRD5                  0.207   dopamine receptor D5 
HRH2                  0.206   histamine receptor H2 isoform 1 
HRH2                  0.206   histamine receptor H2 isoform 2 
HTR2A                 0.205   5-hydroxytryptamine (serotonin) receptor 2A 
TAAR1                 0.202   trace amine associated receptor 1 
HTR6                  0.195   5-hydroxytryptamine (serotonin) receptor 6 
ADRB3                 0.188   adrenergic, beta-3-, receptor 
ADRA2A                0.187   alpha-2A-adrenergic receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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