Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 27886568
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27886568 interferon induced with helicase C domain 1 [Homo
sapiens]
(1025 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27886568 interferon induced with helicase C domain 1 [Homo sa... 2050 0.0
gi|149408122 RNA helicase LGP2 [Homo sapiens] 510 e-144
gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [... 379 e-104
gi|29294649 dicer1 [Homo sapiens] 80 1e-14
gi|29294651 dicer1 [Homo sapiens] 80 1e-14
gi|74959747 Fanconi anemia, complementation group M [Homo sapiens] 70 8e-12
gi|83700235 eukaryotic translation initiation factor 4A2 [Homo s... 50 1e-05
gi|4503529 eukaryotic translation initiation factor 4A isoform 1... 49 2e-05
gi|7661920 eukaryotic translation initiation factor 4A, isoform ... 49 2e-05
gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens] 45 4e-04
gi|13129006 nucleolar protein GU2 [Homo sapiens] 45 5e-04
gi|38569503 ATP-dependent RNA helicase ROK1 isoform b [Homo sapi... 44 8e-04
gi|38569505 ATP-dependent RNA helicase ROK1 isoform a [Homo sapi... 44 8e-04
gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... 44 8e-04
gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... 44 8e-04
gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ... 44 8e-04
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo... 44 0.001
gi|40217847 activating signal cointegrator 1 complex subunit 3-l... 44 0.001
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote... 43 0.001
gi|164419732 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Homo sap... 43 0.002
gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens] 42 0.002
gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens] 42 0.002
gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ... 42 0.003
gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [... 42 0.003
gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sap... 41 0.007
gi|62241024 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2 [... 40 0.009
gi|62241022 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3 [... 40 0.009
gi|6005743 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H... 40 0.009
gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens] 40 0.009
gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens] 40 0.009
>gi|27886568 interferon induced with helicase C domain 1 [Homo
sapiens]
Length = 1025
Score = 2050 bits (5311), Expect = 0.0
Identities = 1025/1025 (100%), Positives = 1025/1025 (100%)
Query: 1 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE 60
MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE
Sbjct: 1 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE 60
Query: 61 LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL 120
LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL
Sbjct: 61 LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL 120
Query: 121 LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA 180
LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA
Sbjct: 121 LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA 180
Query: 181 FLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGM 240
FLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGM
Sbjct: 181 FLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGM 240
Query: 241 ENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARA 300
ENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARA
Sbjct: 241 ENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARA 300
Query: 301 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVI 360
SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVI
Sbjct: 301 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVI 360
Query: 361 VLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENS 420
VLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENS
Sbjct: 361 VLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENS 420
Query: 421 LLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIP 480
LLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIP
Sbjct: 421 LLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIP 480
Query: 481 LPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFA 540
LPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFA
Sbjct: 481 LPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFA 540
Query: 541 IADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVC 600
IADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVC
Sbjct: 541 IADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVC 600
Query: 601 AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDE 660
AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDE
Sbjct: 601 AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDE 660
Query: 661 DDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 720
DDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR
Sbjct: 661 DDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 720
Query: 721 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT 780
GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT
Sbjct: 721 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT 780
Query: 781 GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGV 840
GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGV
Sbjct: 781 GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGV 840
Query: 841 IEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNP 900
IEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNP
Sbjct: 841 IEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNP 900
Query: 901 SLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQINGEI 960
SLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQINGEI
Sbjct: 901 SLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQINGEI 960
Query: 961 ICKCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECCL 1020
ICKCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECCL
Sbjct: 961 ICKCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECCL 1020
Query: 1021 FSDED 1025
FSDED
Sbjct: 1021 FSDED 1025
>gi|149408122 RNA helicase LGP2 [Homo sapiens]
Length = 678
Score = 510 bits (1314), Expect = e-144
Identities = 293/717 (40%), Positives = 428/717 (59%), Gaps = 52/717 (7%)
Query: 306 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 365
++LR YQ EV PALEGKNIII LPTG+GKTR A Y+AK HL+ A KV+VLVN+
Sbjct: 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGA----KVVVLVNR 56
Query: 366 VLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE 425
V LV Q +EF+ L + V LSGD + F + + D++I TA++L+ +L + E
Sbjct: 57 VHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPE 115
Query: 426 NGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQIL 485
E+ V+L+ FSLI++DECHHT+K+ VYN IM YL KL+ + PLPQ+L
Sbjct: 116 --EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ---------PLPQVL 164
Query: 486 GLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 545
GLTASPG GGA+K A H+L+LCANLD + I + + QL+ Q+PCK++ +
Sbjct: 165 GLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRR 224
Query: 546 REDPFKEKLLEIMTRIQTYCQMSPMS-DFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL 604
+DPF + L ++M +I + +M +S FGTQ YEQ +++ + AA G +++RV A HL
Sbjct: 225 SQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHL 284
Query: 605 RKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLK 664
R+YN+AL I+DT+R +DA L+ FY+ E K ++ C
Sbjct: 285 RRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL------------C---------- 322
Query: 665 KPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIF 724
+R L+ LF + L LA + EN KL L + Q++ + S RGIIF
Sbjct: 323 -------AERRLLALFDDRKNELAHLATHGP-ENPKLEMLEKILQRQFS-SSNSPRGIIF 373
Query: 725 TKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKIN 784
T+TRQSA++L W+ + + V ++A LIGAG+SS+ MTQ +Q+EVI KF+ G +N
Sbjct: 374 TRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQDGTLN 433
Query: 785 LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIEHE 844
LL+AT+VAEEGLDI CN+V+RYGL+TNEI+MVQARGRARAD+S Y VA GS ++ E
Sbjct: 434 LLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRE 493
Query: 845 TVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLIT 904
+N+ E +M +A+ VQ M EY KI +LQ ++ ++ + + + + +
Sbjct: 494 LINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPVEHVQ 553
Query: 905 FLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELY-IVRENKALQKKCADYQINGEIICK 963
LC NC V G D+ +E HHVN+ P F Y + R+ + K D++ G I C+
Sbjct: 554 LLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCR 613
Query: 964 -CGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVELPITFPNLDYSECC 1019
CG+ WG M++K + LP LK+R+ ++ + + Q KKW +P + P+ D+ + C
Sbjct: 614 NCGEVWGLQMIYKSVKLPVLKVRS--MLLETPQGRIQAKKWSRVPFSVPDFDFLQHC 668
>gi|27881482 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I [Homo
sapiens]
Length = 925
Score = 379 bits (972), Expect = e-104
Identities = 313/1022 (30%), Positives = 484/1022 (47%), Gaps = 149/1022 (14%)
Query: 12 RYLISCFRARVKMYIQVEPVLDYLT-FLPAEVKEQIQRTVATSGNMQAVELLLSTLEKGV 70
R + F+ ++ + +L Y+ + E + IQ G M+A L L L + +
Sbjct: 6 RRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLE-L 64
Query: 71 WHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNLLQPTLVDKLL 130
GW R F++AL G + Y E D +EY LL LQP +++
Sbjct: 65 QEEGWFRGFLDALDHAG--YSGLYEAIESWDFKKIE---KLEEYRLLLKRLQPEFKTRII 119
Query: 131 VRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQ--KENWFSAFLNVLRQT 188
D++ + E L+ E + G +G +L++ +++ KENW L +
Sbjct: 120 PTDIISD-LSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE 178
Query: 189 GNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGMENNSSESS 248
N SE + + V+ +E+++ ++ +Q +++ N SE+S
Sbjct: 179 RNK----------FSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ--NLSENS 226
Query: 249 FADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARASPEPELQL 308
S V SDT+L SP +
Sbjct: 227 CPPSEV---SDTNLY-------------------------------------SP---FKP 243
Query: 309 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLL 368
R YQ+E+A PA++GKN IIC PTG GKT V++ I + HL KK + GKV+ N++ +
Sbjct: 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVFFANQIPV 302
Query: 369 VEQ---LFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE 425
EQ +F K F+ + YRV G+SG T + ++V++ DIII T QIL N NL+
Sbjct: 303 YEQQKSVFSKYFE---RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN---NLK 356
Query: 426 NGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQIL 485
G LS F+L+I DECH+T+K+ YN IM +YL QKL + PLPQ++
Sbjct: 357 KGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVI 406
Query: 486 GLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 545
GLTAS GVG A +A ++I KLCA+LDA I TVK NL++L+ + +P K F ++
Sbjct: 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
Query: 546 REDPFKEKLLEIMTRIQTYCQ-----MSPMS-----DFGTQPYEQWAIQMEKKA----AK 591
D FK + ++M ++ + + +S +FGTQ YEQW + ++K
Sbjct: 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
Query: 592 EGNRKERVC------AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDS 645
+ + + R+C HLRKYN+AL I++ RM DA +L+ F++ + F IE D
Sbjct: 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD- 585
Query: 646 DEGGDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLR 705
L F E + L+ ++ +P EN KL L
Sbjct: 586 ------------------------------LTQRFEEKLQELESVSRDPSNENPKLEDLC 615
Query: 706 NTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKP 765
+ E+Y E+ I+F KTR AL WI N K + +K L G G +++
Sbjct: 616 FILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTG 672
Query: 766 MTQNEQKEVISKFR-TGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRAR 824
MT QK ++ F+ +G N+LIAT+VA+EG+DI +CN+VI Y V N I M+Q RGR R
Sbjct: 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGR 732
Query: 825 ADESTYVLVAHSGSGVIEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEK 884
A S L+ S +GVIE E +N ++EKMM +I +Q + KIL +Q +
Sbjct: 733 ARGSKCFLLT-SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR 791
Query: 885 KMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVREN 944
+ K +N LC+ C LAC D+ VIE+ H+ + FKE ++ R +
Sbjct: 792 DSQEKPKPVPDKENK----KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPH 847
Query: 945 KALQKKCADYQINGEIIC---KCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYK 1001
K+ + ++ +I C C WG + +K ++P +KI +FVV + Y
Sbjct: 848 PK-PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYS 906
Query: 1002 KW 1003
KW
Sbjct: 907 KW 908
>gi|29294649 dicer1 [Homo sapiens]
Length = 1922
Score = 79.7 bits (195), Expect = 1e-14
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 15/153 (9%)
Query: 721 GIIFTKTRQSAYALSQWITE-NEKFAEVGVKAHHLIGAGHSSEFKPMTQN------EQKE 773
GIIF + R +A L++ I E ++ E+ + + I + +P + +Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503
Query: 774 VISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLV 833
V+ KFR + NLLIAT++ EEG+DI +CN+V+R+ L T + VQ++GRARA S Y+++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query: 834 AHSGSGVIEHETVNDFREKM-MYKAIHCVQNMK 865
A + + + F E + YKAI + K
Sbjct: 564 A-------DTDKIKSFEEDLKTYKAIEKILRNK 589
Score = 56.6 bits (135), Expect = 1e-07
Identities = 63/209 (30%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 309 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKD-HLDKKKKASEPGK-VIVLVNKV 366
R YQ+E+ + AL+ N I+CL TGSGKT +AV + K+ + S GK + LVN
Sbjct: 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSA 103
Query: 367 -LLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP-----EVVKSCDIIISTAQILENS 420
+ +Q+ LK +G + ++ S+ + ++I T + N
Sbjct: 104 NQVAQQVSAVRTHSDLK-----VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNV 158
Query: 421 LLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIP 480
L N + LSD +L++ DECH + Y IM+ EN P
Sbjct: 159 LKN------GYLSLSDINLLVFDECHLAILDHPYREIMK------------LCENCP--S 198
Query: 481 LPQILGLTASPGVGGATKQAKAEEHILKL 509
P+ILGLTAS + G + EE I KL
Sbjct: 199 CPRILGLTASI-LNGKCDPEELEEKIQKL 226
>gi|29294651 dicer1 [Homo sapiens]
Length = 1922
Score = 79.7 bits (195), Expect = 1e-14
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 15/153 (9%)
Query: 721 GIIFTKTRQSAYALSQWITE-NEKFAEVGVKAHHLIGAGHSSEFKPMTQN------EQKE 773
GIIF + R +A L++ I E ++ E+ + + I + +P + +Q+E
Sbjct: 444 GIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEE 503
Query: 774 VISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLV 833
V+ KFR + NLLIAT++ EEG+DI +CN+V+R+ L T + VQ++GRARA S Y+++
Sbjct: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query: 834 AHSGSGVIEHETVNDFREKM-MYKAIHCVQNMK 865
A + + + F E + YKAI + K
Sbjct: 564 A-------DTDKIKSFEEDLKTYKAIEKILRNK 589
Score = 56.6 bits (135), Expect = 1e-07
Identities = 63/209 (30%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 309 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKD-HLDKKKKASEPGK-VIVLVNKV 366
R YQ+E+ + AL+ N I+CL TGSGKT +AV + K+ + S GK + LVN
Sbjct: 45 RKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLVNSA 103
Query: 367 -LLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP-----EVVKSCDIIISTAQILENS 420
+ +Q+ LK +G + ++ S+ + ++I T + N
Sbjct: 104 NQVAQQVSAVRTHSDLK-----VGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNV 158
Query: 421 LLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIP 480
L N + LSD +L++ DECH + Y IM+ EN P
Sbjct: 159 LKN------GYLSLSDINLLVFDECHLAILDHPYREIMK------------LCENCP--S 198
Query: 481 LPQILGLTASPGVGGATKQAKAEEHILKL 509
P+ILGLTAS + G + EE I KL
Sbjct: 199 CPRILGLTASI-LNGKCDPEELEEKIQKL 226
>gi|74959747 Fanconi anemia, complementation group M [Homo sapiens]
Length = 2048
Score = 70.5 bits (171), Expect = 8e-12
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 696 YENEKLTKLRNTIMEQYT---------RTEESARGIIFTKTRQSAYALSQWITENEKFAE 746
Y + KL KL ++E + + + R +IF+ R S +++ +++++
Sbjct: 445 YSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQHQPI-- 502
Query: 747 VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR 806
++ +G K TQ EQ EV+ +FR G N L++T V EEGLDI E +++I
Sbjct: 503 --IRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIIC 560
Query: 807 YGLVTNEIAMVQARGR-ARADESTYVLVAHSGSGVIEHETVNDFR--EKMMYKAI 858
+ + I +VQ GR R + V++ G E N + ++ +YKAI
Sbjct: 561 FDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGR---EERIYNQSQSNKRSIYKAI 612
Score = 44.3 bits (103), Expect = 6e-04
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 26/185 (14%)
Query: 308 LRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVL 367
+R YQ+ +++ AL N ++CLPTG GKT +A + + + GKV+ +
Sbjct: 91 VRDYQLHISRAALFC-NTLVCLPTGLGKTFIAAVVMYNFY----RWFPSGKVVFMAPTKP 145
Query: 368 LVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG 427
LV Q +Q + ++G TQ + E+ S ++ T Q++ N L
Sbjct: 146 LVTQQIEACYQVMGIPQSHMAEMTGSTQAS-TRKEIWCSKRVLFLTPQVMVNDL------ 198
Query: 428 EDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGL 487
++ ++IDE H Y ++R + K N+ +IL L
Sbjct: 199 SRGACPAAEIKCLVIDEAHKALGNYAYCQVVRE--LVKYTNHF------------RILAL 244
Query: 488 TASPG 492
+A+PG
Sbjct: 245 SATPG 249
>gi|83700235 eukaryotic translation initiation factor 4A2 [Homo
sapiens]
Length = 407
Score = 50.1 bits (118), Expect = 1e-05
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 687 LKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAE 746
+K+ N E E KL +T+ + Y T + +IF TR+ W+TE +
Sbjct: 247 IKQFYINVEREEWKL----DTLCDLY-ETLTITQAVIFLNTRRKV----DWLTEKMHARD 297
Query: 747 VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR 806
V A H M Q E+ ++ +FR+G +LI T + G+D+++ ++VI
Sbjct: 298 FTVSALH----------GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 347
Query: 807 YGLVTNEIAMVQARGR 822
Y L TN + GR
Sbjct: 348 YDLPTNRENYIHRIGR 363
>gi|4503529 eukaryotic translation initiation factor 4A isoform 1
[Homo sapiens]
Length = 406
Score = 49.3 bits (116), Expect = 2e-05
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 693 NPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAH 752
N E E KL +T+ + Y T + +IF TR+ W+TE + V A
Sbjct: 252 NVEREEWKL----DTLCDLY-ETLTITQAVIFINTRRKV----DWLTEKMHARDFTVSAM 302
Query: 753 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTN 812
H M Q E+ ++ +FR+G +LI T + G+D+++ ++VI Y L TN
Sbjct: 303 H----------GDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTN 352
Query: 813 EIAMVQARGR 822
+ GR
Sbjct: 353 RENYIHRIGR 362
>gi|7661920 eukaryotic translation initiation factor 4A, isoform 3
[Homo sapiens]
Length = 411
Score = 48.9 bits (115), Expect = 2e-05
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 22/145 (15%)
Query: 679 LFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWI 738
L E K E E++ + L L +T+ + +IF T++ W+
Sbjct: 246 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLT--------ITQAVIFCNTKRKV----DWL 293
Query: 739 TENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDI 798
TE + A V + H M Q E++ ++ +FR+G +LI+T V GLD+
Sbjct: 294 TEKMREANFTVSSMH----------GDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 343
Query: 799 KECNIVIRYGLVTNEIAMVQARGRA 823
+ +++I Y L N + GR+
Sbjct: 344 PQVSLIINYDLPNNRELYIHRIGRS 368
>gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
Length = 614
Score = 45.1 bits (105), Expect = 4e-04
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 697 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIG 756
++EKL +L IM +E+ + I+F +T++ L++ K G A + G
Sbjct: 325 KDEKLIRLMEEIM-----SEKENKTIVFVETKRRCDELTR------KMRRDGWPAMGIHG 373
Query: 757 AGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAM 816
+Q E+ V+++F+ GK +LIAT VA GLD+++ VI Y +
Sbjct: 374 --------DKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDY 425
Query: 817 VQARGRARADEST 829
+ GR T
Sbjct: 426 IHRIGRTARSTKT 438
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 44.7 bits (104), Expect = 5e-04
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 15/196 (7%)
Query: 252 SSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARASPEPELQLRPY 311
S VS DTS + S + L+E+L G+ S S+ + + R L P
Sbjct: 108 SKRVSSLDTSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVT----YLFPI 163
Query: 312 QMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK---KASEPGKVIVLVNKVLL 368
Q++ P EGK++I TG+GKT + L + + K S KV+VL L
Sbjct: 164 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL 223
Query: 369 VEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE 428
Q+ K+F+ +K V G T + + DI++ T +++ L +
Sbjct: 224 ANQV-AKDFKDITRK-LSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHL------Q 275
Query: 429 DAGVQLSDFSLIIIDE 444
+ LS +++DE
Sbjct: 276 SGRLDLSKLRHVVLDE 291
Score = 38.9 bits (89), Expect = 0.025
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 708 IMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMT 767
+++ Y+ +E R IIF +T+++ +TE + A L G +
Sbjct: 381 VLQVYSGSE--GRAIIFCETKKN-------VTEMAMNPHIKQNAQCLHG--------DIA 423
Query: 768 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR 806
Q++++ + FR G +L+AT VA GLDI E ++VI+
Sbjct: 424 QSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQ 462
>gi|38569503 ATP-dependent RNA helicase ROK1 isoform b [Homo
sapiens]
Length = 491
Score = 43.9 bits (102), Expect = 8e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 767 TQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 822
TQ ++ + FR GKI +LI T + G+D K N+VI Y T+ + + GR
Sbjct: 339 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGR 394
Score = 38.1 bits (87), Expect = 0.043
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 310 PYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLV 369
P QM+ L G+ ++ PTGSGKT + + K+ A++ + +++ L
Sbjct: 82 PIQMQAIPVMLHGRELLASAPTGSGKT--LAFSIPILMQLKQPANKGFRALIISPTRELA 139
Query: 370 EQLFRKEFQPFLKKWYRVIGLSGDTQLKISF-PEVVKSCDIIISTAQILENSLLNLENGE 428
Q+ R+ + +R+ + F P+ K DI+++T N L+ L +
Sbjct: 140 SQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT----PNRLIYLLKQD 195
Query: 429 DAGVQLSDFSLIIIDE 444
G+ L+ +++DE
Sbjct: 196 PPGIDLASVEWLVVDE 211
>gi|38569505 ATP-dependent RNA helicase ROK1 isoform a [Homo
sapiens]
Length = 599
Score = 43.9 bits (102), Expect = 8e-04
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 767 TQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 822
TQ ++ + FR GKI +LI T + G+D K N+VI Y T+ + + GR
Sbjct: 447 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGR 502
Score = 38.1 bits (87), Expect = 0.043
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 310 PYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLV 369
P QM+ L G+ ++ PTGSGKT + + K+ A++ + +++ L
Sbjct: 190 PIQMQAIPVMLHGRELLASAPTGSGKT--LAFSIPILMQLKQPANKGFRALIISPTRELA 247
Query: 370 EQLFRKEFQPFLKKWYRVIGLSGDTQLKISF-PEVVKSCDIIISTAQILENSLLNLENGE 428
Q+ R+ + +R+ + F P+ K DI+++T N L+ L +
Sbjct: 248 SQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTT----PNRLIYLLKQD 303
Query: 429 DAGVQLSDFSLIIIDE 444
G+ L+ +++DE
Sbjct: 304 PPGIDLASVEWLVVDE 319
>gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
[Homo sapiens]
Length = 724
Score = 43.9 bits (102), Expect = 8e-04
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 307 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHL-------DKKKKASEPGKV 359
+L P Q L G++++ C TGSGKT + H+ + K+ EP +
Sbjct: 310 KLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECI 369
Query: 360 IVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILEN 419
IV + LV Q++ + + R + + G TQL S ++V+ C+I+ +T
Sbjct: 370 IVAPTRE-LVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT----PG 424
Query: 420 SLLNLENGEDAGVQLSDFSLIIIDE 444
L+++ E G L +++DE
Sbjct: 425 RLMDIIGKEKIG--LKQIKYLVLDE 447
Score = 40.4 bits (93), Expect = 0.009
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 697 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIG 756
+ EKL ++ I ++ T ++F +T++ A ++ ++ + EK + +
Sbjct: 527 KREKLVEILRNIGDERT--------MVFVETKKKADFIATFLCQ-EKISTTSIHGDR--- 574
Query: 757 AGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAM 816
Q E+++ + FR GK +L+AT+VA GLDI+ VI + L +
Sbjct: 575 ----------EQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 624
Query: 817 VQARGR 822
V GR
Sbjct: 625 VHRIGR 630
>gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
[Homo sapiens]
Length = 724
Score = 43.9 bits (102), Expect = 8e-04
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 307 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHL-------DKKKKASEPGKV 359
+L P Q L G++++ C TGSGKT + H+ + K+ EP +
Sbjct: 310 KLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECI 369
Query: 360 IVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILEN 419
IV + LV Q++ + + R + + G TQL S ++V+ C+I+ +T
Sbjct: 370 IVAPTRE-LVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT----PG 424
Query: 420 SLLNLENGEDAGVQLSDFSLIIIDE 444
L+++ E G L +++DE
Sbjct: 425 RLMDIIGKEKIG--LKQIKYLVLDE 447
Score = 40.4 bits (93), Expect = 0.009
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 697 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIG 756
+ EKL ++ I ++ T ++F +T++ A ++ ++ + EK + +
Sbjct: 527 KREKLVEILRNIGDERT--------MVFVETKKKADFIATFLCQ-EKISTTSIHGDR--- 574
Query: 757 AGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAM 816
Q E+++ + FR GK +L+AT+VA GLDI+ VI + L +
Sbjct: 575 ----------EQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 624
Query: 817 VQARGR 822
V GR
Sbjct: 625 VHRIGR 630
>gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
[Homo sapiens]
Length = 690
Score = 43.9 bits (102), Expect = 8e-04
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 307 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHL-------DKKKKASEPGKV 359
+L P Q L G++++ C TGSGKT + H+ + K+ EP +
Sbjct: 276 KLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECI 335
Query: 360 IVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILEN 419
IV + LV Q++ + + R + + G TQL S ++V+ C+I+ +T
Sbjct: 336 IVAPTRE-LVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCAT----PG 390
Query: 420 SLLNLENGEDAGVQLSDFSLIIIDE 444
L+++ E G L +++DE
Sbjct: 391 RLMDIIGKEKIG--LKQIKYLVLDE 413
Score = 40.4 bits (93), Expect = 0.009
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 697 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIG 756
+ EKL ++ I ++ T ++F +T++ A ++ ++ + EK + +
Sbjct: 493 KREKLVEILRNIGDERT--------MVFVETKKKADFIATFLCQ-EKISTTSIHGDR--- 540
Query: 757 AGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAM 816
Q E+++ + FR GK +L+AT+VA GLDI+ VI + L +
Sbjct: 541 ----------EQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEY 590
Query: 817 VQARGR 822
V GR
Sbjct: 591 VHRIGR 596
>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
sapiens]
Length = 662
Score = 43.5 bits (101), Expect = 0.001
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 705 RNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFK 764
R+ +++ T + + ++F +T++ A +L ++ G +S
Sbjct: 428 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--------------GYACTSIHG 473
Query: 765 PMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 822
+Q +++E + +FR+GK +L+AT VA GLDI VI + L ++ V GR
Sbjct: 474 DRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR 531
>gi|40217847 activating signal cointegrator 1 complex subunit 3-like
1 [Homo sapiens]
Length = 2136
Score = 43.5 bits (101), Expect = 0.001
Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 298 ARASPEPELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS-- 354
A+A E L Q ++ + ALE +N+++C PTG+GKT VA+ + K
Sbjct: 471 AQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGT 530
Query: 355 ---EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIII 411
+ K+I + LV+++ + V L+GD QL E + + II+
Sbjct: 531 INVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQL---CKEEISATQIIV 587
Query: 412 STAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRL 471
T + + ++ + GE QL LII+DE H + + ++ + + ++N +
Sbjct: 588 CTPE--KWDIITRKGGERTYTQL--VRLIILDEIHLLHDDR--GPVLEALVARAIRNIEM 641
Query: 472 KKENKPVIPLPQIL 485
+E+ +I L L
Sbjct: 642 TQEDVRLIGLSATL 655
Score = 35.0 bits (79), Expect = 0.36
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 324 NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFR---KEFQPF 380
N+ + PTGSGKT A + + + S G+ + + L EQ++ ++FQ
Sbjct: 1345 NVFVGAPTGSGKTICAEFA----ILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDR 1400
Query: 381 LKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 440
L K +V+ L+G+T + +++ +IIIST + + +L+ + VQ + +L
Sbjct: 1401 LNK--KVVLLTGETSTDL---KLLGKGNIIISTPE--KWDILSRRWKQRKNVQ--NINLF 1451
Query: 441 IIDECH 446
++DE H
Sbjct: 1452 VVDEVH 1457
>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
partial [Homo sapiens]
Length = 1700
Score = 43.1 bits (100), Expect = 0.001
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 298 ARASPEPELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS-- 354
A+A E L Q ++ + ALE +N+++C PTG+GKT VA+ + K
Sbjct: 35 AQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGT 94
Query: 355 ---EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIII 411
+ K+I + LV+++ + V L+GD QL E + + II+
Sbjct: 95 INVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQL---CKEEISATQIIV 151
Query: 412 STAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRL 471
T + + ++ + GE QL LI++DE H + + ++ + + ++N +
Sbjct: 152 CTPE--KWDIITRKGGERTYTQL--VRLIVLDEIHLLHDDR--GPVLEALVARAIRNIEM 205
Query: 472 KKENKPVIPLPQIL 485
+E+ +I L L
Sbjct: 206 TQEDVRLIGLSATL 219
Score = 32.7 bits (73), Expect = 1.8
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 16/126 (12%)
Query: 324 NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFR---KEFQPF 380
N+ + PTGSGKT A + L + + G+ + + L EQ++ ++FQ
Sbjct: 909 NVFVGAPTGSGKTICAEFAILRMLLQNSE----GRCVYITPMRLWQEQVYMDWYEKFQDR 964
Query: 381 LKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 440
L K +V+ L+G+T + +++ +IIIST + + +L+ + VQ + +L
Sbjct: 965 LNK--KVVLLTGETSTDL---KLLGKGNIIISTPE--KWDILSRRWKQRKNVQ--NINLF 1015
Query: 441 IIDECH 446
++DE H
Sbjct: 1016 VVDEVH 1021
>gi|164419732 DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Homo
sapiens]
Length = 483
Score = 42.7 bits (99), Expect = 0.002
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 720 RGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKP--MTQNEQKEVISK 777
+ IIF +TR++A +W+T +I GH +T ++ +I +
Sbjct: 340 QAIIFCQTRRNA----KWLTVE------------MIQDGHQVSLLSGELTVEQRASIIQR 383
Query: 778 FRTGKINLLIATTVAEEGLDIKECNIVIRYGL 809
FR GK +LI T V G+D+K+ IV+ + L
Sbjct: 384 FRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 415
>gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens]
Length = 731
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 767 TQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 822
+Q E+ V+++FR+GK +LIAT VA GLD+++ VI Y + V GR
Sbjct: 453 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 508
>gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens]
Length = 729
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 767 TQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 822
+Q E+ V+++FR+GK +LIAT VA GLD+++ VI Y + V GR
Sbjct: 453 SQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 508
>gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 42.0 bits (97), Expect = 0.003
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 705 RNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFK 764
R+ +++ T + ++F +T++ A +L ++ G +S
Sbjct: 426 RSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHE--------------GYACTSIHG 471
Query: 765 PMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 822
+Q +++E + +FR+GK +L+AT VA GLDI VI + L ++ V GR
Sbjct: 472 DRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
>gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 42.0 bits (97), Expect = 0.003
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 705 RNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFK 764
R+ +++ T + ++F +T++ A +L ++ G +S
Sbjct: 426 RSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHE--------------GYACTSIHG 471
Query: 765 PMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR 822
+Q +++E + +FR+GK +L+AT VA GLDI VI + L ++ V GR
Sbjct: 472 DRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
>gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo
sapiens]
Length = 648
Score = 40.8 bits (94), Expect = 0.007
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 768 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 827
Q ++++ + F+TGK+ +LIAT +A GLD+ + V + N V GR
Sbjct: 523 QRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAG 582
Query: 828 STYVLVAHSGSGVIEHETVNDFR-EKMMYKAIHCVQNMKPEE---YAHKILELQMQSIME 883
T V + T ND+R + + PEE A + Q + ME
Sbjct: 583 RTGVSITTL--------TRNDWRVASELINILERANQSIPEELVSMAERFKAHQQKREME 634
Query: 884 KKMKTKRNIAKHY 896
+KM+ + K +
Sbjct: 635 RKMERPQGRPKKF 647
Score = 30.8 bits (68), Expect = 6.8
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 12/139 (8%)
Query: 310 PYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHL----DKKKKASEPGKVIVLVNK 365
P Q + L+G ++I TG+GKT + HL K + + PG +++ +
Sbjct: 267 PIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTR 326
Query: 366 VLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLE 425
L ++ E + K R + + G E+ K DIII+T L + L +
Sbjct: 327 ELALQ--VEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLND--LQMS 382
Query: 426 NGEDAGVQLSDFSLIIIDE 444
N V L + + +++DE
Sbjct: 383 N----FVNLKNITYLVLDE 397
>gi|62241024 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2
[Homo sapiens]
Length = 448
Score = 40.4 bits (93), Expect = 0.009
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 719 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 778
A+ +IF TR++A W+ AE+ + H + A S E M ++ VI +F
Sbjct: 303 AQAMIFCHTRKTA----SWLA-----AELSKEGHQV--ALLSGE---MMVEQRAAVIERF 348
Query: 779 RTGKINLLIATTVAEEGLDIKECNIVIRYGL 809
R GK +L+ T V G+D+++ ++VI + L
Sbjct: 349 REGKEKVLVTTNVCARGIDVEQVSVVINFDL 379
>gi|62241022 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3
[Homo sapiens]
Length = 370
Score = 40.4 bits (93), Expect = 0.009
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 719 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 778
A+ +IF TR++A W+ AE+ + H + A S E M ++ VI +F
Sbjct: 225 AQAMIFCHTRKTA----SWLA-----AELSKEGHQV--ALLSGE---MMVEQRAAVIERF 270
Query: 779 RTGKINLLIATTVAEEGLDIKECNIVIRYGL 809
R GK +L+ T V G+D+++ ++VI + L
Sbjct: 271 REGKEKVLVTTNVCARGIDVEQVSVVINFDL 301
>gi|6005743 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [Homo
sapiens]
Length = 479
Score = 40.4 bits (93), Expect = 0.009
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 719 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKF 778
A+ +IF TR++A W+ AE+ + H + A S E M ++ VI +F
Sbjct: 334 AQAMIFCHTRKTA----SWLA-----AELSKEGHQV--ALLSGE---MMVEQRAAVIERF 379
Query: 779 RTGKINLLIATTVAEEGLDIKECNIVIRYGL 809
R GK +L+ T V G+D+++ ++VI + L
Sbjct: 380 REGKEKVLVTTNVCARGIDVEQVSVVINFDL 410
>gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 40.4 bits (93), Expect = 0.009
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 753 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGL--- 809
H +G H M Q+E+ +VIS F+ I +L+AT VA GLDI VI Y +
Sbjct: 523 HNLGLLHGD----MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARD 578
Query: 810 VTNEIAMVQARGRARADESTYVLVAHSGS 838
+ + GRA Y L+ S
Sbjct: 579 IDTHTHRIGRTGRAGEKGVAYTLLTPKDS 607
Score = 32.3 bits (72), Expect = 2.3
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 307 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDH-LDKKKKASEPGKVIVLVNK 365
Q P Q + AL G+++I TGSGKT ++ H +D+K+ G + V+V
Sbjct: 275 QPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCP 334
Query: 366 VLLVEQLFRKEFQPFLKKW-YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 424
+ Q E + F K + R + + G + + + +I++ T L +
Sbjct: 335 TRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRL------I 388
Query: 425 ENGEDAGVQLSDFSLIIIDE 444
++ + L S ++ DE
Sbjct: 389 DHVKKKATNLQRVSYLVFDE 408
>gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 40.4 bits (93), Expect = 0.009
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 753 HLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGL--- 809
H +G H M Q+E+ +VIS F+ I +L+AT VA GLDI VI Y +
Sbjct: 523 HNLGLLHGD----MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARD 578
Query: 810 VTNEIAMVQARGRARADESTYVLVAHSGS 838
+ + GRA Y L+ S
Sbjct: 579 IDTHTHRIGRTGRAGEKGVAYTLLTPKDS 607
Score = 32.3 bits (72), Expect = 2.3
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 307 QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDH-LDKKKKASEPGKVIVLVNK 365
Q P Q + AL G+++I TGSGKT ++ H +D+K+ G + V+V
Sbjct: 275 QPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCP 334
Query: 366 VLLVEQLFRKEFQPFLKKW-YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 424
+ Q E + F K + R + + G + + + +I++ T L +
Sbjct: 335 TRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRL------I 388
Query: 425 ENGEDAGVQLSDFSLIIIDE 444
++ + L S ++ DE
Sbjct: 389 DHVKKKATNLQRVSYLVFDE 408
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,425,393
Number of Sequences: 37866
Number of extensions: 1701918
Number of successful extensions: 7974
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 7141
Number of HSP's gapped (non-prelim): 773
length of query: 1025
length of database: 18,247,518
effective HSP length: 112
effective length of query: 913
effective length of database: 14,006,526
effective search space: 12787958238
effective search space used: 12787958238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.