Guide to the Human Genome
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Name: DCBLD1 Sequence: fasta or formatted (539aa) NCBI GI: 27735143
Description:

discoidin, CUB and LCCL domain containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         33           2
 C cysteine            2.0         11           1
 D aspartate           5.0         27           1
 E glutamate           5.0         27           2
 F phenylalanine       3.5         19           1
 G glycine             8.9         48           3
 H histidine           1.9         10           1
 I isoleucine          5.8         31           2
 K lysine              6.3         34           5
 L leucine             8.3         45           3
 M methionine          1.5          8           1
 N asparagine          4.5         24           3
 P proline             4.1         22           2
 Q glutamine           4.5         24           1
 R arginine            5.2         28           1
 S serine             10.2         55           3
 T threonine           6.9         37           2
 V valine              5.8         31           2
 W tryptophan          1.5          8           1
 Y tyrosine            3.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   discoidin, CUB and LCCL domain containing 1 
DCBLD2                0.300   discoidin, CUB and LCCL domain containing 2 
F5                    0.092   coagulation factor V precursor 
MFGE8                 0.084   milk fat globule-EGF factor 8 protein isoform a [Ho...
F8                    0.080   coagulation factor VIII isoform b precursor 
NRP1                  0.080   neuropilin 1 isoform c 
NRP1                  0.080   neuropilin 1 isoform b 
NRP1                  0.080   neuropilin 1 isoform a 
F8                    0.080   coagulation factor VIII isoform a precursor 
EDIL3                 0.073   EGF-like repeats and discoidin I-like domains-contai...
NRP2                  0.065   neuropilin 2 isoform 3 precursor 
NRP2                  0.065   neuropilin 2 isoform 5 precursor 
NRP2                  0.065   neuropilin 2 isoform 1 precursor 
NRP2                  0.065   neuropilin 2 isoform 6 precursor 
NRP2                  0.065   neuropilin 2 isoform 4 precursor 
NRP2                  0.065   neuropilin 2 isoform 2 precursor 
AEBP1                 0.054   adipocyte enhancer binding protein 1 precursor [Homo...
RS1                   0.053   X-linked juvenile retinoschisis protein precursor [H...
CNTNAP2               0.047   cell recognition molecule Caspr2 precursor 
MFGE8                 0.044   milk fat globule-EGF factor 8 protein isoform b [Ho...
CPXM2                 0.043   carboxypeptidase X (M14 family), member 2 
CNTNAP4               0.042   cell recognition protein CASPR4 isoform 2 
CNTNAP4               0.042   cell recognition protein CASPR4 isoform 1 
LOC389722             0.041   PREDICTED: hypothetical protein LOC389722 isoform 2...
LOC389722             0.041   PREDICTED: hypothetical protein LOC389722 isoform 1...
LOC642406             0.041   PREDICTED: similar to contactin associated protein-...
CNTNAP3               0.041   cell recognition molecule CASPR3 
CNTNAP5               0.040   contactin associated protein-like 5 
CUBN                  0.039   cubilin 
MASP2                 0.038   mannan-binding lectin serine protease 2 isoform 1 pr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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