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Search of human proteins with 27436978
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27436978 potassium voltage-gated channel, Isk-related
family, member 2 [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27436978 potassium voltage-gated channel, Isk-related family,... 248 1e-66
gi|189095241 potassium voltage-gated channel, Isk-related family... 55 1e-08
gi|189095239 potassium voltage-gated channel, Isk-related family... 55 1e-08
gi|189095237 potassium voltage-gated channel, Isk-related family... 55 1e-08
gi|60218915 potassium voltage-gated channel, Isk-related family,... 55 1e-08
gi|4885443 potassium voltage-gated channel, Isk-related family, ... 32 0.093
gi|154448884 potassium voltage-gated channel, Isk-related family... 29 0.79
gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens] 29 1.0
gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens] 29 1.0
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 28 1.8
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 28 1.8
gi|171184451 centrosome-associated protein 350 [Homo sapiens] 28 2.3
gi|63047871 hypothetical protein LOC122525 [Homo sapiens] 27 3.0
gi|76496472 ribosomal protein L3 isoform b [Homo sapiens] 27 3.0
gi|239047271 autophagy related 2A [Homo sapiens] 27 3.9
gi|218156307 anoctamin 6 isoform c [Homo sapiens] 27 3.9
gi|218156305 anoctamin 6 isoform c [Homo sapiens] 27 3.9
gi|218156303 anoctamin 6 isoform b [Homo sapiens] 27 3.9
gi|218156299 anoctamin 6 isoform a [Homo sapiens] 27 3.9
gi|26051223 sperm-associated cation channel 2 isoform 2 [Homo sa... 27 3.9
gi|16876443 sperm-associated cation channel 2 isoform 1 [Homo sa... 27 3.9
gi|149588643 zinc finger protein 283 [Homo sapiens] 27 3.9
gi|52486251 phospholipase A2, group VI isoform b [Homo sapiens] 27 5.1
gi|52486194 phospholipase A2, group VI isoform a [Homo sapiens] 27 5.1
gi|47132620 keratin 2 [Homo sapiens] 27 5.1
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 26 6.7
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 26 6.7
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s... 26 6.7
gi|109134347 NY-REN-58 antigen [Homo sapiens] 26 6.7
gi|109134355 NY-REN-58 antigen [Homo sapiens] 26 6.7
>gi|27436978 potassium voltage-gated channel, Isk-related family,
member 2 [Homo sapiens]
Length = 123
Score = 248 bits (632), Expect = 1e-66
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MSTLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF 60
MSTLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF
Sbjct: 1 MSTLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF 60
Query: 61 SFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENIGAAGFK 120
SFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENIGAAGFK
Sbjct: 61 SFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENIGAAGFK 120
Query: 121 MSP 123
MSP
Sbjct: 121 MSP 123
>gi|189095241 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 55.1 bits (131), Expect = 1e-08
Identities = 23/51 (45%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 51 LYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVED-WQEKYKSQI 100
LY+++++G F F + I++S ++SK+ EHSNDP++ YI D WQEK K+ +
Sbjct: 45 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYV 95
>gi|189095239 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 55.1 bits (131), Expect = 1e-08
Identities = 23/51 (45%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 51 LYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVED-WQEKYKSQI 100
LY+++++G F F + I++S ++SK+ EHSNDP++ YI D WQEK K+ +
Sbjct: 45 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYV 95
>gi|189095237 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 55.1 bits (131), Expect = 1e-08
Identities = 23/51 (45%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 51 LYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVED-WQEKYKSQI 100
LY+++++G F F + I++S ++SK+ EHSNDP++ YI D WQEK K+ +
Sbjct: 45 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYV 95
>gi|60218915 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 55.1 bits (131), Expect = 1e-08
Identities = 23/51 (45%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 51 LYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVED-WQEKYKSQI 100
LY+++++G F F + I++S ++SK+ EHSNDP++ YI D WQEK K+ +
Sbjct: 45 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYV 95
>gi|4885443 potassium voltage-gated channel, Isk-related family,
member 3 [Homo sapiens]
Length = 103
Score = 32.3 bits (72), Expect = 0.093
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 29 NTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYI 88
N T E+ A D +N Y IL++M + F+ + ++++ +S++ + +DPYH YI
Sbjct: 41 NQTEERRASLPGRD-DNSYMYILFVMFL---FAVTVGSLILGYTRSRKVDKRSDPYHVYI 96
>gi|154448884 potassium voltage-gated channel, Isk-related family,
member 4 [Homo sapiens]
Length = 170
Score = 29.3 bits (64), Expect = 0.79
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 45 NFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVED--WQEKYK 97
N Y+ IL +M G+F ++ I++ +KSKRRE + Y E+ W E K
Sbjct: 34 NEYFYILVVMSFYGIF---LIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMK 85
>gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
Length = 156
Score = 28.9 bits (63), Expect = 1.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 6 NFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAE 44
NF Q L+++ +I + ++ WR A Q +L VD +
Sbjct: 47 NFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLD 85
>gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]
Length = 198
Score = 28.9 bits (63), Expect = 1.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 6 NFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAE 44
NF Q L+++ +I + ++ WR A Q +L VD +
Sbjct: 89 NFHQNLKNLLTKIILEHVSTWRTEAQANQISLPRLVDLD 127
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 28.1 bits (61), Expect = 1.8
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 35 EALQAKVDAENFY-YVILYLMVMIGMFSFI---IVAILVSTVKSKRREH 79
E + +DA +FY ++ L++++G F I +V I ++K+REH
Sbjct: 361 EIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQREH 409
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 28.1 bits (61), Expect = 1.8
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 35 EALQAKVDAENFY-YVILYLMVMIGMFSFI---IVAILVSTVKSKRREH 79
E + +DA +FY ++ L++++G F I +V I ++K+REH
Sbjct: 361 EIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQREH 409
>gi|171184451 centrosome-associated protein 350 [Homo sapiens]
Length = 3117
Score = 27.7 bits (60), Expect = 2.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 72 VKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKA 108
V SKRR + D QYIV +E+ + Q EE KA
Sbjct: 584 VISKRRHYDTDEVRQYIVRQQEERKRKQ---NEEKKA 617
>gi|63047871 hypothetical protein LOC122525 [Homo sapiens]
Length = 310
Score = 27.3 bits (59), Expect = 3.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 6 NFTQTLEDVFRRIFITYMDNWRQNTTAEQE 35
NFT+ LE++ I +Y NWR T +++
Sbjct: 138 NFTKNLENLMSTIQESYCSNWRCPTRVQED 167
>gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]
Length = 354
Score = 27.3 bits (59), Expect = 3.0
Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 54 MVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDW-QEKYKSQILNLEESKATIHE 112
MV++G+ ++ + T K+ EH +D + ++W + K K+ ++ ++ + T+ E
Sbjct: 84 MVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAHLMEIQVNGGTVAE 143
Query: 113 NI 114
+
Sbjct: 144 KL 145
>gi|239047271 autophagy related 2A [Homo sapiens]
Length = 1938
Score = 26.9 bits (58), Expect = 3.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 4 LSNFTQTLEDVFRRIFITYMD 24
L F QT+E V RRI +T++D
Sbjct: 153 LEMFAQTIETVLRRIKVTFLD 173
>gi|218156307 anoctamin 6 isoform c [Homo sapiens]
Length = 929
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/57 (17%), Positives = 28/57 (49%)
Query: 46 FYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILN 102
F++++L + +IG+ + + +V + K + + DP +Y+ + I++
Sbjct: 460 FFWILLIIASVIGIIVYRLSVFIVFSAKLPKNINGTDPIQKYLTPQTATSITASIIS 516
>gi|218156305 anoctamin 6 isoform c [Homo sapiens]
Length = 929
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/57 (17%), Positives = 28/57 (49%)
Query: 46 FYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILN 102
F++++L + +IG+ + + +V + K + + DP +Y+ + I++
Sbjct: 460 FFWILLIIASVIGIIVYRLSVFIVFSAKLPKNINGTDPIQKYLTPQTATSITASIIS 516
>gi|218156303 anoctamin 6 isoform b [Homo sapiens]
Length = 892
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/57 (17%), Positives = 28/57 (49%)
Query: 46 FYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILN 102
F++++L + +IG+ + + +V + K + + DP +Y+ + I++
Sbjct: 442 FFWILLIIASVIGIIVYRLSVFIVFSAKLPKNINGTDPIQKYLTPQTATSITASIIS 498
>gi|218156299 anoctamin 6 isoform a [Homo sapiens]
Length = 910
Score = 26.9 bits (58), Expect = 3.9
Identities = 10/57 (17%), Positives = 28/57 (49%)
Query: 46 FYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILN 102
F++++L + +IG+ + + +V + K + + DP +Y+ + I++
Sbjct: 460 FFWILLIIASVIGIIVYRLSVFIVFSAKLPKNINGTDPIQKYLTPQTATSITASIIS 516
>gi|26051223 sperm-associated cation channel 2 isoform 2 [Homo
sapiens]
Length = 530
Score = 26.9 bits (58), Expect = 3.9
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 48 YVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESK 107
Y IL+L++ +F IIVA++V+ ++ R+E N+ + V+ + +K QI ++ K
Sbjct: 320 YFILWLLLGSIIFRSIIVAMMVTNFQNIRKE-LNEEMARREVQLKADMFKRQI--IQRRK 376
Query: 108 ATIHENIGAAGFKM 121
HE + ++ K+
Sbjct: 377 NMSHEALTSSHSKI 390
>gi|16876443 sperm-associated cation channel 2 isoform 1 [Homo
sapiens]
Length = 528
Score = 26.9 bits (58), Expect = 3.9
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 48 YVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESK 107
Y IL+L++ +F IIVA++V+ ++ R+E N+ + V+ + +K QI ++ K
Sbjct: 320 YFILWLLLGSIIFRSIIVAMMVTNFQNIRKE-LNEEMARREVQLKADMFKRQI--IQRRK 376
Query: 108 ATIHENIGAAGFKM 121
HE + ++ K+
Sbjct: 377 NMSHEALTSSHSKI 390
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 26.9 bits (58), Expect = 3.9
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 51 LYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEES 106
LY+ VM+ +S ++ L S ++ S + + W+ K KS+ L LE S
Sbjct: 97 LYVDVMLENYSNLVSLDLESKTYETKKIFSENDIFEINFSQWEMKDKSKTLGLEAS 152
>gi|52486251 phospholipase A2, group VI isoform b [Homo sapiens]
Length = 752
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 51 LYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQIL 101
L++ VM F IV + R EH N P H + +D E K+ I+
Sbjct: 321 LHVAVMRNRFDCAIVLLTHGANADARGEHGNTPLHLAMSKDNVEMIKALIV 371
>gi|52486194 phospholipase A2, group VI isoform a [Homo sapiens]
Length = 806
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 51 LYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQIL 101
L++ VM F IV + R EH N P H + +D E K+ I+
Sbjct: 321 LHVAVMRNRFDCAIVLLTHGANADARGEHGNTPLHLAMSKDNVEMIKALIV 371
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 26.6 bits (57), Expect = 5.1
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 2 STLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFS 61
S L+N +ED ++ Y D + T AE + + K D +N Y + + L + + +
Sbjct: 252 SELNNMQDLVEDYKKK----YEDEINKRTAAENDFVTLKKDVDNAYMIKVELQSKVDLLN 307
>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4470
Score = 26.2 bits (56), Expect = 6.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 13 DVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF 60
D F RI + + Q+A++AK A NF I+ L+ +G+F
Sbjct: 1908 DEFNRISVEVLSVIAVQVKCVQDAIRAKKKAFNFLGEIIGLIPTVGIF 1955
>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 26.2 bits (56), Expect = 6.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 13 DVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF 60
D F RI + + Q+A++AK A NF I+ L+ +G+F
Sbjct: 1885 DEFNRISVEVLSVIAVQVKCVQDAIRAKKKAFNFLGEIIGLIPTVGIF 1932
>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
sapiens]
Length = 4485
Score = 26.2 bits (56), Expect = 6.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 13 DVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF 60
D F RI + + Q+A++AK A NF I+ L+ +G+F
Sbjct: 1885 DEFNRISVEVLSVIAVQVKCVQDAIRAKKKAFNFLGEIIGLIPTVGIF 1932
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 78 EHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENI 114
EH + Y + I+++ + KY+S+I LEE K + +
Sbjct: 163 EHQKEEYAR-ILDEGKIKYESEIARLEEDKEELRNQL 198
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 26.2 bits (56), Expect = 6.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 78 EHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENI 114
EH + Y + I+++ + KY+S+I LEE K + +
Sbjct: 163 EHQKEEYAR-ILDEGKIKYESEIARLEEDKEELRNQL 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,659,389
Number of Sequences: 37866
Number of extensions: 118082
Number of successful extensions: 481
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 33
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.