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Search of human proteins with 27262665
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27262665 colony stimulating factor 1 isoform c precursor
[Homo sapiens]
(256 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27262665 colony stimulating factor 1 isoform c precursor [Hom... 519 e-148
gi|27262667 colony stimulating factor 1 isoform a precursor [Hom... 370 e-103
gi|27262663 colony stimulating factor 1 isoform b precursor [Hom... 370 e-103
gi|27262661 colony stimulating factor 1 isoform a precursor [Hom... 370 e-103
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens] 33 0.32
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens] 33 0.32
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap... 32 0.54
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [... 31 0.92
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 31 0.92
gi|50658077 phosphodiesterase 4D interacting protein isoform 4 [... 31 0.92
gi|50658075 phosphodiesterase 4D interacting protein isoform 3 [... 31 0.92
gi|61744467 low density lipoprotein receptor-related protein 8 i... 31 1.2
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso... 31 1.2
gi|61744471 low density lipoprotein receptor-related protein 8 i... 30 1.6
gi|66082554 low density lipoprotein receptor-related protein 8 i... 30 1.6
gi|65301119 low density lipoprotein receptor-related protein 8 i... 30 1.6
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 30 2.1
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 29 3.5
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 29 3.5
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 29 3.5
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ... 29 3.5
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 29 3.5
gi|153792144 ATP-binding cassette, sub-family A, member 10 [Homo... 29 4.6
gi|114205410 hypothetical protein LOC51059 [Homo sapiens] 29 4.6
gi|21687218 CD300 molecule-like family member g [Homo sapiens] 29 4.6
gi|88943074 PREDICTED: similar to Phosphodiesterase 4D interacti... 28 6.0
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 28 6.0
gi|5174469 5-hydroxytryptamine (serotonin) receptor 3B precursor... 28 7.8
gi|133778961 testis expressed 15 [Homo sapiens] 28 7.8
gi|27477115 ATP-binding cassette, sub-family A, member 9 [Homo s... 28 7.8
>gi|27262665 colony stimulating factor 1 isoform c precursor [Homo
sapiens]
Length = 256
Score = 519 bits (1337), Expect = e-148
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 1 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME 60
MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
Sbjct: 1 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME 60
Query: 61 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK 120
TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
Sbjct: 61 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK 120
Query: 121 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS 180
SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
Sbjct: 121 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS 180
Query: 181 QGHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQP 240
QGHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQP
Sbjct: 181 QGHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQP 240
Query: 241 EGSPLTQDDRQVELPV 256
EGSPLTQDDRQVELPV
Sbjct: 241 EGSPLTQDDRQVELPV 256
>gi|27262667 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 370 bits (951), Expect = e-103
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME 60
MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
Sbjct: 1 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME 60
Query: 61 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK 120
TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
Sbjct: 61 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK 120
Query: 121 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS 180
SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
Sbjct: 121 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS 180
Query: 181 Q 181
Q
Sbjct: 181 Q 181
Score = 153 bits (386), Expect = 2e-37
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 182 GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE 241
GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE
Sbjct: 480 GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE 539
Query: 242 GSPLTQDDRQVELPV 256
GSPLTQDDRQVELPV
Sbjct: 540 GSPLTQDDRQVELPV 554
>gi|27262663 colony stimulating factor 1 isoform b precursor [Homo
sapiens]
Length = 438
Score = 370 bits (951), Expect = e-103
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME 60
MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
Sbjct: 1 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME 60
Query: 61 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK 120
TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
Sbjct: 61 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK 120
Query: 121 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS 180
SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
Sbjct: 121 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS 180
Query: 181 Q 181
Q
Sbjct: 181 Q 181
Score = 153 bits (386), Expect = 2e-37
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 182 GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE 241
GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE
Sbjct: 364 GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE 423
Query: 242 GSPLTQDDRQVELPV 256
GSPLTQDDRQVELPV
Sbjct: 424 GSPLTQDDRQVELPV 438
>gi|27262661 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 370 bits (951), Expect = e-103
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME 60
MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
Sbjct: 1 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME 60
Query: 61 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK 120
TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
Sbjct: 61 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK 120
Query: 121 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS 180
SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
Sbjct: 121 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS 180
Query: 181 Q 181
Q
Sbjct: 181 Q 181
Score = 153 bits (386), Expect = 2e-37
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 182 GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE 241
GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE
Sbjct: 480 GHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPE 539
Query: 242 GSPLTQDDRQVELPV 256
GSPLTQDDRQVELPV
Sbjct: 540 GSPLTQDDRQVELPV 554
>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
Length = 1179
Score = 32.7 bits (73), Expect = 0.32
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 10 CPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMI 43
CP TW +L +L CL R E+S C+H++
Sbjct: 126 CPKHTWSNNLAVLECLQDVREPENEISSDCNHLL 159
>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
Length = 1203
Score = 32.7 bits (73), Expect = 0.32
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 10 CPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMI 43
CP TW +L +L CL R E+S C+H++
Sbjct: 126 CPKHTWSNNLAVLECLQDVREPENEISSDCNHLL 159
>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
sapiens]
Length = 525
Score = 32.0 bits (71), Expect = 0.54
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 175 FAECSSQGHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQ------ 228
F E SS G +R + + L++ + L+LL G F+ WRR+
Sbjct: 427 FTELSSPGAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRPRRFSAL 486
Query: 229 ----EPQRADSPLEQPEGSPLTQDDRQVE 253
P +A S +E+ E P + + + E
Sbjct: 487 EQGIHPPQAQSKIEELEQEPEPEPEPEPE 515
>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
[Homo sapiens]
Length = 969
Score = 31.2 bits (69), Expect = 0.92
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 113 QELSLRLKSCFTKD-YEEHDKACVRTFYETPLQL---LEKVKNVFNETKNLLDKDWNIFS 168
+ SL+L+ F ++ ++ +A Y+ ++L +E +K + K LDK W
Sbjct: 18 ENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQDKKQHLDKTWADVE 77
Query: 169 KNCNNSFAECSSQGHERQSEGSSSPQLQESVFHLL 203
+ + AE Q ERQ E +L E+ LL
Sbjct: 78 NLNSQNEAELRRQFEERQQETEHVYELLENKIQLL 112
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
[Homo sapiens]
Length = 2346
Score = 31.2 bits (69), Expect = 0.92
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 113 QELSLRLKSCFTKD-YEEHDKACVRTFYETPLQL---LEKVKNVFNETKNLLDKDWNIFS 168
+ SL+L+ F ++ ++ +A Y+ ++L +E +K + K LDK W
Sbjct: 18 ENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQDKKQHLDKTWADVE 77
Query: 169 KNCNNSFAECSSQGHERQSEGSSSPQLQESVFHLL 203
+ + AE Q ERQ E +L E+ LL
Sbjct: 78 NLNSQNEAELRRQFEERQQETEHVYELLENKIQLL 112
>gi|50658077 phosphodiesterase 4D interacting protein isoform 4
[Homo sapiens]
Length = 173
Score = 31.2 bits (69), Expect = 0.92
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 113 QELSLRLKSCFTKD-YEEHDKACVRTFYETPLQL---LEKVKNVFNETKNLLDKDWNIFS 168
+ SL+L+ F ++ ++ +A Y+ ++L +E +K + K LDK W
Sbjct: 18 ENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQDKKQHLDKTWADVE 77
Query: 169 KNCNNSFAECSSQGHERQSEGSSSPQLQESVFHLL 203
+ + AE Q ERQ E +L E+ LL
Sbjct: 78 NLNSQNEAELRRQFEERQQETEHVYELLENKIQLL 112
>gi|50658075 phosphodiesterase 4D interacting protein isoform 3
[Homo sapiens]
Length = 310
Score = 31.2 bits (69), Expect = 0.92
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 113 QELSLRLKSCFTKD-YEEHDKACVRTFYETPLQL---LEKVKNVFNETKNLLDKDWNIFS 168
+ SL+L+ F ++ ++ +A Y+ ++L +E +K + K LDK W
Sbjct: 155 ENFSLKLRIYFLEERMQQKYEASREDIYKRNIELKVEVESLKRELQDKKQHLDKTWADVE 214
Query: 169 KNCNNSFAECSSQGHERQSEGSSSPQLQESVFHLL 203
+ + AE Q ERQ E +L E+ LL
Sbjct: 215 NLNSQNEAELRRQFEERQQETEHVYELLENKIQLL 249
>gi|61744467 low density lipoprotein receptor-related protein 8
isoform 3 precursor [Homo sapiens]
Length = 700
Score = 30.8 bits (68), Expect = 1.2
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 178 CSSQGHERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPL 237
C +E GS+ + +V ++VP V++ LL + G L +R +R + + D+P+
Sbjct: 605 CYRDANEDSKMGST---VTAAVIGIIVPIVVIALLCMSGYLIWRNWKRKNTKSMNFDNPV 661
Query: 238 EQPEGSPLTQDDRQV 252
+ +D+ +
Sbjct: 662 YRKTTEEEDEDELHI 676
>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor [Homo sapiens]
Length = 303
Score = 30.8 bits (68), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 197 ESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQP 240
E+ + V +L ++ +G + RWRRR Q+ +A +P +P
Sbjct: 195 ETAVGVAVAVTVLGIMILGLICLLRWRRRKGQQRTKATTPAREP 238
>gi|61744471 low density lipoprotein receptor-related protein 8
isoform 1 precursor [Homo sapiens]
Length = 963
Score = 30.4 bits (67), Expect = 1.6
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 183 HERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPEG 242
H + + +V ++VP V++ LL + G L +R +R + + D+P+ +
Sbjct: 811 HYANEDSKMGSTVTAAVIGIIVPIVVIALLCMSGYLIWRNWKRKNTKSMNFDNPVYRKTT 870
Query: 243 SPLTQDDRQV 252
+D+ +
Sbjct: 871 EEEDEDELHI 880
>gi|66082554 low density lipoprotein receptor-related protein 8
isoform 2 precursor [Homo sapiens]
Length = 793
Score = 30.4 bits (67), Expect = 1.6
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 183 HERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPEG 242
H + + +V ++VP V++ LL + G L +R +R + + D+P+ +
Sbjct: 641 HYANEDSKMGSTVTAAVIGIIVPIVVIALLCMSGYLIWRNWKRKNTKSMNFDNPVYRKTT 700
Query: 243 SPLTQDDRQV 252
+D+ +
Sbjct: 701 EEEDEDELHI 710
>gi|65301119 low density lipoprotein receptor-related protein 8
isoform 4 precursor [Homo sapiens]
Length = 904
Score = 30.4 bits (67), Expect = 1.6
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 183 HERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPEG 242
H + + +V ++VP V++ LL + G L +R +R + + D+P+ +
Sbjct: 811 HYANEDSKMGSTVTAAVIGIIVPIVVIALLCMSGYLIWRNWKRKNTKSMNFDNPVYRKTT 870
Query: 243 SPLTQDDRQV 252
+D+ +
Sbjct: 871 EEEDEDELHI 880
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
polymerase [Homo sapiens]
Length = 1327
Score = 30.0 bits (66), Expect = 2.1
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 33 EEVSEYCSHMIGSGH--LQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQ 90
EE+ E + G H ++ ++RL+ Q T+ +TF V+Q + + K + V+
Sbjct: 1063 EELKEIGINAYGHRHKLIKGVERLLGGQQGTNPYLTFHCVNQGTILLDLAPEDKEYQSVE 1122
Query: 91 DIMEDTMR-FRD--------NTPNAIAIVQLQELSLRLKSC 122
+ M+ T+R RD N N I I ++ LR + C
Sbjct: 1123 EEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFC 1163
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 145 LLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSSQGHERQSEGSSSP 193
+L+K+++V E +L D NIF N ++ + S+G ER+ E + P
Sbjct: 35 VLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSN-FSRGDERRHEAAVPP 82
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 145 LLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSSQGHERQSEGSSSP 193
+L+K+++V E +L D NIF N ++ + S+G ER+ E + P
Sbjct: 69 VLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSN-FSRGDERRHEAAVPP 116
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 145 LLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSSQGHERQSEGSSSP 193
+L+K+++V E +L D NIF N ++ + S+G ER+ E + P
Sbjct: 69 VLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSN-FSRGDERRHEAAVPP 116
>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
sapiens]
Length = 579
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 145 LLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSSQGHERQSEGSSSP 193
+L+K+++V E +L D NIF N ++ + S+G ER+ E + P
Sbjct: 69 VLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSN-FSRGDERRHEAAVPP 116
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 29.3 bits (64), Expect = 3.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 145 LLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSSQGHERQSEGSSSP 193
+L+K+++V E +L D NIF N ++ + S+G ER+ E + P
Sbjct: 69 VLDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSN-FSRGDERRHEAAVPP 116
>gi|153792144 ATP-binding cassette, sub-family A, member 10 [Homo
sapiens]
Length = 1543
Score = 28.9 bits (63), Expect = 4.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 94 EDTMRFRDNTPNAIAIVQLQELSLRLKSCFTKDYEEHDKACVRT 137
ED R NA+ L+E + SC K+Y E K+C T
Sbjct: 1172 EDVQAERVQAANALTAPNLEEEPVITASCLHKEYYETKKSCFST 1215
>gi|114205410 hypothetical protein LOC51059 [Homo sapiens]
Length = 1406
Score = 28.9 bits (63), Expect = 4.6
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 127 YEEHDKACVRTFYETPLQLLEKVKNVFNETKNL------------LDKDWNIFSKNCNNS 174
Y EH K V TF E +Q ++ ++ L +D DWN +
Sbjct: 353 YMEHQKLAVLTFQENLIQTHSQLSLDIRNSEYLTSMPPLPAECLDIDGDWNTLPVIFEDR 412
Query: 175 FAECSSQGH 183
+ +C + GH
Sbjct: 413 YVDCPATGH 421
>gi|21687218 CD300 molecule-like family member g [Homo sapiens]
Length = 332
Score = 28.9 bits (63), Expect = 4.6
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 187 SEGSSSPQLQESVFHLLVPSVILV-LLAVGGLLFY-----RWRRRSHQ--EPQR------ 232
S GSS P++ + +L P ++L+ LL+ GL+ + WR+ + Q E QR
Sbjct: 233 SSGSSKPRVSIPMVRILAPVLVLLSLLSAAGLIAFCSHLLLWRKEAQQATETQRNEKFCL 292
Query: 233 -------ADSPLEQPEGSPLT 246
++P + PEG ++
Sbjct: 293 SRLTAEEKEAPSQAPEGDVIS 313
>gi|88943074 PREDICTED: similar to Phosphodiesterase 4D interacting
protein [Homo sapiens]
Length = 134
Score = 28.5 bits (62), Expect = 6.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 139 YETPLQL------LEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSSQGHERQSEGSSS 192
YE P Q +E +K + K LDK W + + AE Q ERQ E
Sbjct: 3 YEMPSQNTELKVEVESLKRELQDKKQHLDKTWADVENLNSQNEAELRRQFEERQQETEHV 62
Query: 193 PQLQESVFHLL 203
+L E+ LL
Sbjct: 63 YELLENKIQLL 73
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 28.5 bits (62), Expect = 6.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 35 VSEYCSHMIGSGHLQSLQRLIDSQMETSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIM 93
V C+ M+ G LQ I +Q + Q TF DQ+ P C ++ FL Q ++
Sbjct: 2138 VPRRCNDMMNVGRLQGFDGKIVAQGKLLLQDTFLVTDQDAGLLPRCRERRIFLFEQIVI 2196
>gi|5174469 5-hydroxytryptamine (serotonin) receptor 3B precursor
[Homo sapiens]
Length = 441
Score = 28.1 bits (61), Expect = 7.8
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 132 KACVRTFYETPLQLLEKVKNVFNETKNLL-DKDWNIFSKNCNNSFAECSSQGHER-QSEG 189
K+ + T + L L +++ ++ K L D +W + S + S + S+ G + Q
Sbjct: 174 KSILHTVEDVDLAFLRSPEDIQHDKKAFLNDSEWELLSVSSTYSILQSSAGGFAQIQFNV 233
Query: 190 SSSPQLQESVFHLLVPSVILVLLAVG 215
V LL+PS+ L+L+ +G
Sbjct: 234 VMRRHPLVYVVSLLIPSIFLMLVDLG 259
>gi|133778961 testis expressed 15 [Homo sapiens]
Length = 2789
Score = 28.1 bits (61), Expect = 7.8
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 114 ELSLRLKSCFTKDYEE---HDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKN 170
E SL C ++ ++ H K R + T LQL+ KV E K L K + I
Sbjct: 984 EASLCKSKCLSRKLDKAVVHLKKAHRRVH-TSLQLITKVGE---ERKGPLPKSYAII--- 1036
Query: 171 CNNSFAECSSQGHERQSE 188
CNN + C QG+ S+
Sbjct: 1037 CNNFWESCDLQGYSSVSQ 1054
>gi|27477115 ATP-binding cassette, sub-family A, member 9 [Homo
sapiens]
Length = 1624
Score = 28.1 bits (61), Expect = 7.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 94 EDTMRFRDNTPNAIAIVQLQELSLRLKSCFTKDYEEHDKAC 134
ED R T NA+A+ E + + SC K+Y K C
Sbjct: 1259 EDIQMERMRTVNAMAVRDFDETPVIIASCLRKEYAGKKKNC 1299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,400,673
Number of Sequences: 37866
Number of extensions: 443625
Number of successful extensions: 1486
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1460
Number of HSP's gapped (non-prelim): 34
length of query: 256
length of database: 18,247,518
effective HSP length: 100
effective length of query: 156
effective length of database: 14,460,918
effective search space: 2255903208
effective search space used: 2255903208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.